                         SEQUENCE LISTING

<110>  UNIVERSITY COLLEGE CORK, NATIONAL UNIVERSITY OF IRELAND, 
       CORK
       University of Copenhagen
 
<120>  Methods and kits for determining the sensitivity of strains of 
       Lactococcus lactis bacteria to phage

<130>  P11106PC00

<150>  EP 13158881.6
<151>  2013-03-13

<160>  30    

<170>  PatentIn version 3.5

<210>  1
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for MG-SK cwps type

<400>  1
aaagctcatc tttcccctgt tgt                                               23


<210>  2
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for MG-SK cwps type

<400>  2
gcaccatagt ctggaataag acc                                               23


<210>  3
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for IL-KF cwps type

<400>  3
gattcagttg cacggccg                                                     18


<210>  4
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for IL-KF cwps type

<400>  4
agtaaggggg cggattgtg                                                    19


<210>  5
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for UC-CV cwps type

<400>  5
gtgcctatgc tccgttagtc                                                   20


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for UC-CV cwps type

<400>  6
cgagggccaa tctctttacc                                                   20


<210>  7
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for control cwps type

<400>  7
gtacactatg tttataacaa tcatccag                                          28


<210>  8
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for control cwps type

<400>  8
gcaaaccaga ttcaaagtca gtatg                                             25


<210>  9
<211>  686
<212>  DNA
<213>  Lactococcus lactis

<400>  9
aaagctcatc tttcccctgt tgtctatgta aacaatgtat caattcaaca aggaacaagt       60

acgaatacta caaaaatgaa tgttccaatt aaggctttca actccccaga caataatttt      120

ggaatgacgg cgaatgtgat ttctcagaca actggaactc agattacctc gtctgctccc      180

aaagtgaata cgactggtat aaattttgtt gaagtggatg caaataaaaa taagatggtt      240

agagatgctg tttatatttt agggaagaat gtgggtggta aaaagtatct atatgatagt      300

caagggaaat ggagcgaaat tcaagatttg tctacagttt ctcctacaag ctatacttta      360

ttaagaggtg ggaaccaata tgtttttggt gatgatgatg tatctccaat tgagttgaat      420

aatacaagat tcaattatga ttatgaacgt gataccaaaa ttaatcaatc tttaatcaaa      480

ttatttggtt tgggagaagg aaaagattat ttcctttatc aggttgccgc tcctactaac      540

tactctgttg ataaaacacc cattgatttt tctatttttt cagaaaatgt agtttcgcct      600

aatggtagcc aacttactaa aactagtatg aagacagcaa gcaaccaatc atttaaacta      660

aatggtctta ttccagacta tggtgc                                           686


<210>  10
<211>  183
<212>  DNA
<213>  Lactococcus lactis

<400>  10
gattcagttg cacggccgta tgaaactcat caagttaatt ttgatagtac gatgacactt       60

ctcgagatct tacgtcaaaa taaaaaatca ttgaaacgat ttgttttttc ttcaagcgca      120

gcagtttatg gtgatgagcc aacacttcct aagcaggaag agggcacaat ccgccccctt      180

act                                                                    183


<210>  11
<211>  442
<212>  DNA
<213>  Lactococcus lactis

<400>  11
gtgcctatgc tccgttagtc tttgatcatg aaatccaaat ttccccaaca gcaagtgata       60

cattgaaaat gattaatttt cctaaaaaac caggaattta ttctgaaaat ctaactggga      120

tttcaagttg tctggttgta aagagcgact tattaataga aattggcgga ctgaatattg      180

aatttccctt agattatctt gaccattggc tattttggaa aatttttaat tctaataaaa      240

aggtagtagt aattaatgaa aaaataaatc accatctttc tattcaagaa ataaatcaaa      300

caaatgatct gagattttat agtatcttct ctagtgaata tcatttttat aagtattata      360

agccggaatt gctcttaaat ctttataaaa aatatgttag aatgattatt aaaggaattc      420

ttggtaaaga gattggccct cg                                               442


<210>  12
<211>  889
<212>  DNA
<213>  Lactococcus lactis

<400>  12
gtacactatg tttataacaa tcatccagac gtgcatatca cagttttgga taaattaact       60

tatgcaggaa atgttaataa cattaacatg ttatttgaca gtggacgtgt cgaacttgtt      120

gttggcgaca ttgcagaccc tgaaattgtt gatcaagtgg cttctaaagc agatgcaatt      180

gttcactatg cagctgagag ccataatgat aattcattga aatctcaaga tgaatttata      240

caaacaaact ttatcggaac ttatacgttg attcaagcgg ctcgtaaata tgatttacgt      300

ttccaccatg tttctactga tgaagtttat ggtgatttgc cttatcgcga agatttgcca      360

ggccatggcg aaggtgaagg tgaaaaattt actgacaaaa caccttacaa tccatcaagc      420

ccctactctt caactaaagc ggcttctgat ttaattgttc gtgcttgggt acgttcattt      480

ggacttaaag caacaatttc aaactgctca aataactacg gaccttttca acacatcgaa      540

aaatttattc ctcgtcaaat tactaatatt ctttcaggaa tcaaaccaaa actttacggt      600

gatggtaaaa acgttcgaga ctggattcat acagacgacc attcatcagg cgtttggaca      660

attttgaata aaggtcgtat gggtgaaact taccttatcg gtgcagacgg tgaaaaaaat      720

aacaaagaag ttcttgaaga tattttgact cgtatgggca aagataagag cgattatgat      780

cgtgtaactg accgtgctgg ccatgacctt cggtacgcaa ttgacaatac aaaattgcgt      840

accgaacttg gttgggctcc aaaacatact gactttgaat ctggtttgc                  889


<210>  13
<211>  1419
<212>  DNA
<213>  Lactococcus lactis

<400>  13
ttgaaagtat taaaaaacta tcttctgaat agctcttacc aattattgat tgtgattatt       60

ccaattatca cgattcctta tatttctagg gtgcttggca caacggctat aggtttaaat      120

acatttacct atgcaattat tcagtacttt gtattagctg gttcaattgg gataacaact      180

tatggaaatc gagagattgc atatcatcaa tctgataaag aaaagagaag ccaaattttt      240

tgggaaattt catttttgag attttgtacc attgctctct cttttcttat tttctgtatt      300

ttcttagcct ttcaaaaaca ggattttgag atttatctct tgcagagtat cgctattatc      360

gctgcggctt ttgatatttc ttggtatttt atgggagtgg aaaatttcaa gcgaacagta      420

gggcgtaatt ttattgtctc tattatttca gttattttca tctttacttt tattaagagt      480

ccaaaggatt tgcccattta tgttttaatc attactggaa catcattgat tggaaatctt      540

tcactttggc catatttgcg caaggaaatt ttcgctccca aatggaaaga attagcatta      600

ggacatcatt taaaacccac actattactt tttttgccgc aaattgctac acagatttat      660

acaattgcaa acaaaacgat gattgggatt tttgatggga aaacggcatc gggatttttt      720

agtcaatcgg atagtctgat taaagtaaca ttgagcattg tcacttcttt aggtgtagtc      780

atgttgcctc atgtttcaaa tcttttttca aaaggtaaaa ttaaagaagt tcaagagact      840

ttaaaaaaat ctttcgtcct tatgactggg cttgctgtac cgataatgtt tggcgttatg      900

ggaatagcac tcaattttgc aggattcttt ttcggcccta aatgggtagc tgttggtcct      960

ttgctaatga tggaagcccc aattattata ttcattgctt ggagtaatgt tttgggaatt     1020

cagtaccttc ttccattaaa tcggatgaga gaattcacaa cttcggtaac aattggtgca     1080

gttcttaata ttttacttaa ttttgctttg attcctcttt tggggctcac tggtgcaatg     1140

attgcgacag taattgccga ggcttcagtg acgatttatc aattttatat tttgagaaat     1200

gactttgaga taattccaat gattttatct tgctggaaat actttttatc tggtgcagtg     1260

atgtttggag ctgttttcta tttaaacaat tctttgaaga tgaatatgca taatcttata     1320

tttcaagtat tgattggtgc tataatatat ataattctta atatcttatt gaaatccagt     1380

ctttttattg aagtcaaaaa gattgtaagt aaaaaataa                            1419


<210>  14
<211>  942
<212>  DNA
<213>  Lactococcus lactis

<400>  14
atgataacaa agagtaacat actaataaca ggtggagcag gttttattgg ctcaagttta       60

gcgaacgaat tactacctca aaataagatt actgttattg ataatctttc gatgggagat      120

tttaataatc ttcatgaaac aagtaatctt acaaaaattt taggtgatgt cactgataaa      180

aatctcctgg taaaagtttt ggaagaaaat gattttgatt atatttttca tttagcagca      240

attgcttcgg ttgccgattc agttgcacgg ccgtatgaaa ctcatcaagt taattttgat      300

agtacgatga cacttctcga gatcttacgt caaaataaaa aatcattgaa acgatttgtt      360

ttttcttcaa gcgcagcagt ttatggtgat gagccaacac ttcctaagca ggaagagggc      420

acaatccgcc cccttactcc ttatgcaatt gataaatttg catctgaaaa aatgacaatg      480

atttataata atttatatga tgttcctacc agtgcaacac gctttttcaa tgtttatgga      540

ccaaatcaaa atcccagttc accctattca ggatttattt ccattcttgt tgaccgtttg      600

cgagaaaata cagaattgac tatttttgga gatggagaac agtctcgaga ttttgtatat      660

atagaagatg ttattcaagc attattacta atagcgacct ctgaacaatc ctttggagaa      720

gtctataatg tcgggactgg ggtcaaaaat tcaataaacg atttaacgaa atttgctcaa      780

aaatttacaa ataaagagtt atctatcaaa tttgatgatg tgcgacaagg agatatcaaa      840

gactcagttt ccgatatttc aaaacttaag gacataggat actcacctaa atttgattta      900

tctaatggta tgaagaagta tctcaactac gagtttaaat aa                         942


<210>  15
<211>  837
<212>  DNA
<213>  Lactococcus lactis

<400>  15
atgaatttaa caatttgctt agtagcttat agtcaaaaat ttacagagac agtctcattt       60

tattctttat taaacttgac taagaatcta aaagaaaata ttaatttata tatttttgac      120

aatggaagtg aagatttttc gtcctctcat gaggagttgg atactcattc atttcatagc      180

ttgaactata tttataataa acaaaaagaa cgtggtacta gaattgctta tcaaagtatt      240

ttagatgtta gtcaagatga atggttaatg tttttagacg atgatacaga aatttcacaa      300

ccatatttat cgaaaatttt atcagaaata aaaaaagaaa accaaagtga tatttgtgcc      360

tatgctccgt tagtctttga tcatgaaatc caaatttccc caacagcaag tgatacattg      420

aaaatgatta attttcctaa aaaaccagga atttattctg aaaatctaac tgggatttca      480

agttgtctgg ttgtaaagag cgacttatta atagaaattg gcggactgaa tattgaattt      540

cccttagatt atcttgacca ttggctattt tggaaaattt ttaattctaa taaaaaggta      600

gtagtaatta atgaaaaaat aaatcaccat ctttctattc aagaaataaa tcaaacaaat      660

gatctgagat tttatagtat cttctctagt gaatatcatt tttataagta ttataagccg      720

gaattgctct taaatcttta taaaaaatat gttagaatga ttattaaagg aattcttggt      780

aaagagattg gccctcgttg gaaaatttta ttaaaaatat tattggagag aaaatga         837


<210>  16
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  16
gtcatcaaac atactttcgt c                                                 21


<210>  17
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  17
aagttttgcc attgtttctc c                                                 21


<210>  18
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primre

<400>  18
gaacaatgga ttatttatgc tga                                               23


<210>  19
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  19
attcccattt tcagcaacaa g                                                 21


<210>  20
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  20
gttgtaattg ttactagcca g                                                 21


<210>  21
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  21
tcaatcgcat tatagattac acc                                               23


<210>  22
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  22
gattttattc gaggcttagc a                                                 21


<210>  23
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  23
tagcattaca atcaatctgt ca                                                22


<210>  24
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  24
gattatattc ggggcttagc a                                                 21


<210>  25
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  25
tgtaatatgg tattgtctag ca                                                22


<210>  26
<211>  743
<212>  DNA
<213>  Lactococcus lactis

<400>  26
gtcatcaaac atactttcgt catatgtgcg tatatgcaat ctccgtattt agaggaaagt       60

ataaaatcaa ttttagacca aggatctatt aaagaaggaa atcagaagtg gttttatata      120

cttctactcc taatgattat atagaaaata tttgtcataa atataatatc aaaatattta      180

ttggtgaagg tggaggcatt ggagcagatt ggaatggagc tttagcggca gttcaaacta      240

aatatgctac aattgttcat caagacgatc tatatgataa gaaatatgga gaaatgataa      300

ttaatgattt tgagtctcaa aaagactcta atattgtttt tactgactat tatgaaattg      360

atgaatactc taaacctaga aaaagaaata ttaatttaaa aataaaaagt ttaggattaa      420

aactaatgtc tttttgggaa aataaaaaat atcaaagaag agtttactct tttggtaatt      480

ttatttgttg cccagctgtt tcttataata tggaacgtct taaagatttt agatttaatg      540

aagagatgaa aatggcggta gactgggatg catgggaaag aataatgaaa aaatctggac      600

atgtccatta tcttccgcta aaattgatgg ctcatagaat acatagtgat tcggaaacaa      660

ccaataatac tttaaataaa aacagagaaa aagaagagca cgagatgttt cgaagatatt      720

ggggagaaac aatggcaaaa ctt                                              743


<210>  27
<211>  651
<212>  DNA
<213>  Lactococcus lactis

<400>  27
gaacaatgga ttatttatgc tgaaaaatta aagcaaatgt ttcctgaaat gaaattaata       60

gggtggctgc atctggatct caaccattat gaaacttatc atcttgcgaa aagcaaaaat      120

caatttttaa atggtcttag ggtgtgtgat cggttgattg tactaactca agaggaaaaa      180

aatgttctag aaaaccgcgg atttgaaaaa gttcaagttt tgcataatcc acttacatta      240

aatgatacaa ataaagttgt ggacttgaat aaaaaaataa tatcatgggt aggacggatt      300

gatattttgc ataagggctt ggactattta atagagatag cgaaaatttt gcctgacgac      360

tgggaaatta gagtagctgg ttccggaagg gacaacaaaa gatttaaaaa attgattgaa      420

aaaaataggc ttacgaataa aattttatgg gtaggtccga aaaatggaga agaactaaca      480

tatcattatt taaatagctc cattttttta atgacatcaa gatttgaaag ctttggctta      540

gtattggtag aagcaatgaa ctatggtctt cctataattg cattctcaca aacaggaagt      600

gatgaaattc ttaaaaatga acaatatggc cttgttgctg aaaatgggaa t               651


<210>  28
<211>  449
<212>  DNA
<213>  Lactococcus lactis

<400>  28
gttgtaattg ttactagcca gcatgataaa gacttgccta ctaaagaaga atttgatcat       60

ttgaaaatat atcggttgcc tattagaaag atttggaaaa atcggtatcc ttttccatta      120

aaaaatgaaa gatataaaca attaatttct gatattactt ctgaaccaat tgactattat      180

gtagtgaata caagatttca attgcctgct ttattaggtg cccagttagc aaaaaaagca      240

ggaaaagaag ccttggtatt agagcatggg accacgtacc tcacattaaa taattctttg      300

ttagatagca tacttcacag gatagagcac tttttggtta aaaaaatcaa aaaaaatact      360

aagacttttt acggtgtttc aaaagaagct actgaatggt taaagacttt tggaatagag      420

gctaaaggtg taatctataa tgcgattga                                        449


<210>  29
<211>  968
<212>  DNA
<213>  Lactococcus lactis

<400>  29
gattttattc gaggcttagc aaagaaaatt ttaacataga aagagtattt ttataaatga       60

gtgaaaagaa atatgattcg gagactttgg aacgacttca agagatacta cgaatgatgt      120

tagcagattt tgataaaata tgctaagata acgatattga ttatttttta atgggtggaa      180

gtttacttgg agctgtaagg cacaatggga tgataccttg ggatgatgat attgacgttg      240

gaatgactgg tgagaattat gataaattta tacaagtcat gaataattca caaaatgaaa      300

aatatagtct tatgagtagt gagagcgagg aaagctatac cactcagatt gtactggata      360

ttttagcatt tgacaatcta gcagataatg aaagacgtgc aaaaattcaa ggtataaaat      420

ctttcatata tgggaaactt tcatatctta caacaattga aaaccctaca gttcatcaag      480

taggaataaa actatttttt attaatacta caataaaaag tctttcaaaa aacattcaaa      540

ctttttaaag ttacccctaa attttttatt aaaaaaggtg aaggagtagc tagaaaatat      600

aactcttctc aaacgcaaag agtaatgtat atgaatcagt caaaaatgtt ttcagaaatt      660

tttgatcgaa atgacctctt accaactaga cgtgttgatt ttgatggaca aaaaataaaa      720

attccaaagg aaacagataa atatttggct gcacattatg gtgattatat gacacttcca      780

ccagaagata aaagatataa tcattatacg gccattttag attttggaaa gtataaataa      840

ggtaaaatat aatgaaagat aaagaaaaaa ttgtattggt tgctggaact tttgatattt      900

tgcatgagag ccacgttaat atgttgaaaa atgctaaaaa tcttggtgac agattgattg      960

taatgcta                                                               968


<210>  30
<211>  1141
<212>  DNA
<213>  Lactococcus lactis

<400>  30
gattatattc ggggcttagc aaagaaaatt ttaacataga aagagtattt ttataaatga       60

gtgaaaagaa atatgattcg gagactttag aaggacttca agagatacta cgaatgatgt      120

tagcagattt tgataaaata tgcgaagata acgatattga ttatttttta gtaggtggaa      180

gtttacttgg agcgataagg cacaatggga tgataccttg ggatgatgac attgacattg      240

gtatgaccgg aaaagattat gataaattta ttcaaatcat gaagaagagg gaatctgata      300

aatatacgct tataagtagt gaaacaaata aagaatttcc atatttgcga tctgcgggat      360

ttatgctaaa tggtacaaaa tttataaaag atatttcaat aatggatgaa acctcttcta      420

gtatagtagt tgacattatt gcgttcgata acttagcaga tggtaagtta aaaagcatct      480

cacaaggctt aaaaacattt ttctacggta aatctgcctt ccttacaact ctgaataatc      540

ctacgaatca taggaaagga atttcaaaaa ttgttacgac agttatgata aaaatgctcc      600

atggattatt taagttattt aaagtaaccc cacatttctt cattaacaaa ggaaacaaaa      660

tagcaacgaa atataatatg ctggaaacag gaagagtcat gtacatgaat gaatctaaac      720

cgtttttagt tacaattaag aagaaaaatt tatttcccat aaagaaaatt ccttttgatg      780

gcttgatgat tagtgtccca aataacccag aacagtattt attagaaaga tatggagatt      840

ataagacact accgccagaa agtgagcaat ataatcattt cccagatgta ttggactttg      900

gagaatacaa aaatttaagg agaagagagc aatgaaatta gcattattga cggctggagg      960

agttggtagc cgtatgaaac aagaggtacc taaacagttt attcatgtaa atgataaacc     1020

tttaatcatt tatgctttag aggcttttca aaagcatcca gatattgatg taattgctat     1080

tgcatgctta gaaggatgga aaaatgtttt ggaggcatat gctagacaat accatattac     1140

a                                                                     1141


