                               SEQUENCE LISTING

<110> CALIFORNIA INSTITUTE OF TECHNOLOGY
 
<120> CHROMOPHORE-BASED CHARACTERIZATION AND DETECTION METHODS

<130> 38075-719.601

<140> PCT/US2014/012836
<141> 2014-01-23

<150> 61/756,343
<151> 2013-01-24

<160> 52    

<170> PatentIn version 3.5

<210> 1
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 1
ggaagctcta ttagatacag acacctgtca acataattgg                             40


<210> 2
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 2
ggaagctcta ttagatacag atgatacagt attagaagaa acacctgtca acataattgg       60


<210> 3
<211> 80
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 3
ggaagctcta ttagatacag atgatacagt attagaagaa atgagtttgc caggaagatg       60

acacctgtca acataattgg                                                   80


<210> 4
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 4
ggaagctcta ttagatacag                                                   20


<210> 5
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 5
ccaattatgt tgacaggtgt                                                   20


<210> 6
<211> 85
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 6
gtagggatag accctttcaa actgcttcaa aacagccaag tatacagcct aatcagaccg       60

aatgagaatc cagcacacaa gagtc                                             85


<210> 7
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 7
gtagggatag accctttcaa actg                                              24


<210> 8
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 8
gactcttgtg tgctggattc tc                                                22


<210> 9
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 9
agccaagtat acagcctaat cagaccga                                          28


<210> 10
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 10
gtagggatag accctttcaa actg                                              24


<210> 11
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 11
gactcttgtg tgctggattc tc                                                22


<210> 12
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 12
gtagggagag accctttcaa actg                                              24


<210> 13
<211> 81
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 13
gtgcttccca taagcattta cgccaaaata cctcaactag ggttcaacgt tgaagagtac       60

tctatggttg ggtatgaagc c                                                 81


<210> 14
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 14
gtgcttccca taagcattta cg                                                22


<210> 15
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 15
ggcttcatac ccaaccatag ag                                                22


<210> 16
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 16
cctcaactag ggttcaacgt tgaagagt                                          28


<210> 17
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 17
gtgcttccca taagcattta cg                                                22


<210> 18
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 18
ggcttcatac ccaaccatag ag                                                22


<210> 19
<211> 85
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 19
gttggaaact acacacatct cctctatgta caaccaacac aaaggaagga tccaacatct       60

gcttaacaag aaccgacaga ggatg                                             85


<210> 20
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 20
gttggaaact acacacatct cctc                                              24


<210> 21
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 21
catcctctgt cggttcttgt taag                                              24


<210> 22
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 22
ccaacacaaa ggaaggatcc aacatctg                                          28


<210> 23
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 23
gttggaaact acacacatct cctc                                              24


<210> 24
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 24
catcctctgt cggttcttgt taag                                              24


<210> 25
<211> 81
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 25
cctcacctca agtcagaaca taactgagga gttttaccaa tcgacatgta gtgcagttag       60

cagaggttac ttgagtgctt t                                                 81


<210> 26
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 26
cctcacctca agtcagaaca taac                                              24


<210> 27
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 27
aaagcactca agtaacctct gc                                                22


<210> 28
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 28
accaatcgac atgtagtgca gt                                                22


<210> 29
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 29
cctcacctca agtcagaaca taac                                              24


<210> 30
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 30
aaagcactca agtaacctct gc                                                22


<210> 31
<211> 85
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 31
acaatggaca aggtgtgaag agccccgtgt gctcgctttg agtcctccgg cccctgaatg       60

tggctaacct taaccctgca gctag                                             85


<210> 32
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 32
acaatggaca aggtgtgaag ag                                                22


<210> 33
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 33
ctagctgcag ggttaaggtt ag                                                22


<210> 34
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 34
tgtgctcgct ttgagtcctc cg                                                22


<210> 35
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 35
acaatggaca aggtgtgaag ag                                                22


<210> 36
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 36
ctagctgcag ggttaaggtt ag                                                22


<210> 37
<211> 88
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 37
gagagcattg agaacagtca ggccttggtg gatcaatcaa acagaatcct aagcagtgca       60

gagaaaggaa acactggctt catcattg                                          88


<210> 38
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 38
gagagcattg agaacagtca gg                                                22


<210> 39
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 39
caatgatgaa gccagtgttt cc                                                22


<210> 40
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 40
acagaatcct aagcagtgca gaga                                              24


<210> 41
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 41
gagagcattg agaacagtca gg                                                22


<210> 42
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 42
caatgatgaa gccagtgttt cc                                                22


<210> 43
<211> 86
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 43
tcgagagtga acccagtcat aacttactca acagcaaccg aaagagtaaa cgagctggcc       60

atccgaaaca gaacactctc agctgg                                            86


<210> 44
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 44
tcgagagtga acccagtcat aa                                                22


<210> 45
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 45
ccagctgaga gtgttctgtt tc                                                22


<210> 46
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 46
ccgaaagagt aaacgagctg gcca                                              24


<210> 47
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 47
ccgaaagagt aaacgagctg gcca                                              24


<210> 48
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 48
ccgaaagagt aaacgagctg gcca                                              24


<210> 49
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 49
ccgaaagagt aaacgagctg gcca                                              24


<210> 50
<211> 59
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 50
atgggggggg ggggggggat ggggggggaa ggggggatgg ggggggatgg ggatggatg        59


<210> 51
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 51
atgggggggg ggggggggat                                                   20


<210> 52
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 52
catccatccc catccccccc                                                   20


