                         SEQUENCE LISTING

<110>  Trustees of Boston University
       Boston Medical Center Corporation
 
<120>  Primers, Probes and Methods for Mycobacterium Tuberculosis 
       Specific Diagnostics

<130>  1006.005-PCT

<150>  61733348
<151>  2012-12-04

<160>  50    

<170>  PatentIn version 3.5

<210>  1
<211>  28
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  1
tgaccgttgc cgaaggggcg ttgttggc                                          28


<210>  2
<211>  28
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  2
gccaacaacg ccccttcggc aacggtca                                          28


<210>  3
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  3
tttcccgaga cagtgccgcc cgatc                                             25


<210>  4
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  4
gatcgggcgg cactgtctcg ggaaa                                             25


<210>  5
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  5
cacaacctag cgggtgggcg ggatt                                             25


<210>  6
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  6
aatcccgccc acccgctagg ttgtg                                             25


<210>  7
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  7
agactttccc caaaccgacc gaggt                                             25


<210>  8
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  8
acctcggtcg gtttggggaa agtct                                             25


<210>  9
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  9
gcgactccca cgccgccgcc gt                                                22


<210>  10
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  10
acggcggcgg cgtgggagtc gc                                                22


<210>  11
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  11
gaccgttacc gaaggggcgt tgttgg                                            26


<210>  12
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  12
ccaacaacgc cccttcggta acggtc                                            26


<210>  13
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  13
ttcccgagac agtgccgccc gat                                               23


<210>  14
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  14
atcgggcggc actgtctcgg gaa                                               23


<210>  15
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  15
acaacatagc gggtgggcgg gat                                               23


<210>  16
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  16
atcccgccca cccgctatgt tgt                                               23


<210>  17
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  17
gactttcccc aaaccgaccg agg                                               23


<210>  18
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  18
cctcggtcgg tttggggaaa gtc                                               23


<210>  19
<211>  20
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  19
cgactcccac gccgccgccg                                                   20


<210>  20
<211>  20
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  20
cggcggcggc gtgggagtcg                                                   20


<210>  21
<211>  27
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  21
aaaccaaggc tctctcgccg aatgacc                                           27


<210>  22
<211>  27
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  22
ggtcattcgg cgagagagcc ttggttt                                           27


<210>  23
<211>  24
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  23
gttgtctacg gctgtgtggg tggg                                              24


<210>  24
<211>  24
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  24
cccacccaca cagccgtaga caac                                              24


<210>  25
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  25
ggtcccccga ccaccattac cctgg                                             25


<210>  26
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  26
ccagggtaat ggtggtcggg ggacc                                             25


<210>  27
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  27
aaccaaggct ctctcaccga atgac                                             25


<210>  28
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  28
gtcattcggt gagagagcct tggtt                                             25


<210>  29
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  29
ttgtctacgg ctgtgtgggt gg                                                22


<210>  30
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  30
ccacccacac agccgtagac aa                                                22


<210>  31
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  31
gtcccccgac caccattacc ctg                                               23


<210>  32
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  32
cagggtaatg gtggtcgggg gac                                               23


<210>  33
<211>  24
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  33
gtcccccgac caccattacc ctgg                                              24


<210>  34
<211>  24
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  34
ccagggtaat ggtggtcggg ggac                                              24


<210>  35
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  35
tcccccgacc accattaccc tg                                                22


<210>  36
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  36
cagggtaatg gtggtcgggg ga                                                22


<210>  37
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  37
ccgtcgttgt ctacggctgt gtggg                                             25


<210>  38
<211>  25
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  38
cccacacagc cgtagacaac gacgg                                             25


<210>  39
<211>  26
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  39
aggtcggtgg ttatgccggt gtgccg                                            26


<210>  40
<211>  26
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  40
cggcacaccg gcataaccac cgacct                                            26


<210>  41
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  41
cgtcgttgtc tacggctgtg tgg                                               23


<210>  42
<211>  23
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  42
ccacacagcc gtagacaacg acg                                               23


<210>  43
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  43
ggtcggtggt tatgcgggtg tgcc                                              24


<210>  44
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  44
ggcacacccg cataaccacc gacc                                              24


<210>  45
<211>  17
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  45
ggccggtggt cgccgcg                                                      17


<210>  46
<211>  19
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  46
acgtgacaga ccgccgggc                                                    19


<210>  47
<211>  1505
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  47
agctgaccgt tgccgaaggg gcgttgttgg cagcgctgat tcggcggcct tcgacgctgg       60

acccggcggt cgaccccgaa ggggcccatg cccgctggaa ttgggtactc gacggcatgg      120

tggaaaccaa ggctctctcg ccgaatgacc gtgcggcgca ggtgtttccc gagacagtgc      180

cgcccgatct ggcccgggca gagaatcaga ccaaaggacc caacgggctg atcgagcggc      240

aggtgacaag ggagttgctc gagctgttca acatcgacga gcagaccctc aacacccagg      300

ggctggtggt caccaccacg attgatccgc aggcccaacg ggcggcggag aaggcggttg      360

cgaaatacct ggacgggcag gaccccgaca tgcgtgccgc cgtggtttcc atcgacccgc      420

acaacggggc ggtgcgtgcg tactacggtg gcgacaatgc caatggcttt gacttcgctc      480

aagcgggatt gcagactgga tcgtcgttta aggtgtttgc tctggtggcc gcccttgagc      540

aggggatcgg cctgggctac caggtagaca gctctccgtt gacggtcgac ggcatcaaga      600

tcaccaacgt cgagggcgag ggttgcggga cgtgcaacat cgccgaggcg ctcaaaatgt      660

cgctgaacac ctcctactac cggctgatgc tcaagctcaa cggcggccca caggctgtgg      720

ccgatgccgc gcaccaagcc ggcattgcct ccagcttccc gggcgttgcg cacacgctgt      780

ccgaagatgg caagggtgga ccgcccaaca acgggatcgt gttgggccag taccaaaccc      840

gggtgatcga catggcatcg gcgtatgcca cgttggccgc gtccggtatc taccacccgc      900

cgcatttcgt acagaaggtg gtcagtgcca acggccaggt cctcttcgac gccagcaccg      960

cggacaacac cggcgatcag cgcatcccca aggcggtagc cgacaacgtg actgcggcga     1020

tggagccgat cgcaggttat tcgcgtggcc acaacctagc gggtgggcgg gattcggcgg     1080

ccaagaccgg cactacgcaa tttggtgaca ccaccgcgaa caaagacgcc tggatggtcg     1140

ggtacacgcc gtcgttgtct acggctgtgt gggtgggcac cgtcaagggt gacgagccac     1200

tggtaaccgc ttcgggtgca gcgatttacg gctcgggcct gccgtcggac atctggaagg     1260

caaccatgga cggcgccttg aagggcacgt cgaacgagac tttccccaaa ccgaccgagg     1320

tcggtggtta tgccggtgtg ccgccgccgc cgccgccgcc ggaggtacca ccttcggaga     1380

ccgtcatcca gcccacggtc gaaattgcgc cggggattac catcccgatc ggtcccccga     1440

ccaccattac cctggcgcca ccgcccccgg ccccgcccgc tgcgactccc acgccgccgc     1500

cgtga                                                                 1505


<210>  48
<211>  1526
<212>  DNA
<213>  Mycobacterium avium

<400>  48
agctcaccgt gtccgagggt gcgctgctgg cggcgctgat ccgccggccg tccaccctgg       60

acccggccgt cgatcccaag ggcgcgctgg cgcgctggaa ctgggtgctc gacggcatgg      120

tggagaccaa ggcgctgccc gccaaggacc gtgccgcgca ggtcttcccg cagaccgtgc      180

cgcccgacca ggcgcgcgcg cagaaccaga cgaccgggcc caacggcctg atcgagcgtc      240

aggtgaccaa ggagctgatg gagctcttca acatcgacga gcggacgctg aacacgcagg      300

gcctgcaggt caccaccacc atcgacccca aggcccagca ggccgccgag aaggcggtgt      360

cgaaatacct tgacgggcaa gaccccgaca tgcgcgcggc ggtggtgtcg gtggatccgc      420

acgacggcgc catccgcgcc tactacggcg gtagcgacgc caacggtttc gacttcgccc      480

aggcgggatt gcagaccggc tcgtcgttca aggtgttctg cctgatcgcc gcgcttgagc      540

agggcatcgg cctgggctac caggtggaca gctcgccgct gacggtcgac ggcatcaaga      600

tcaccaacgt cgagggcgag agctgcggga cgtgcaacat cgcgcaggcg ctcaagatgt      660

cgttgaacac ctcctattac cggctgatgc tcaaactcaa gggcgggccg caggccgtgg      720

ccgatgccgc gcatcaggca ggcgttgcca cgagttttcc cggcgtggac cacacgctgt      780

ccgaggacgg caagggcggg ccgccgaaca acggaattgt gctgggccag taccaaaccc      840

gggtgatcga catggcctcg gcgtacgcca cgctggccgc ctcgggcgtc taccaccggc      900

cgcatttcgt gcagaaggtg gtcaactcgg acggtcaggt gctcttcgac gccggcaagt      960

ccgacaacaa cggcgagcag cggatcccga aggccgtcgc ggacaacgtc accgcggcca     1020

tggaaccgat cgcgggctac tcgcggggtc acgcgttggc cggcggccgg ccgtcggcgg     1080

ccaagaccgg caccacgcag ctcggtgaca ccacctccaa caaggacgcc tggatggtcg     1140

gctacacgcc gtcgctgtcg acggcggtgt ggctgggcac ggccaagggc gaccagccgc     1200

tggtaaccgc ttccggcgga ccggtttacg ggtccgggct gccctcggat atctggaagg     1260

ccaccatgga cggggcgctg aagggcaccc ccaacgaatc gttcccgaag ccggccgagg     1320

tcggcggcta cgccggtgtg cccgcgccgc cgcccccgcc gaaggcgccg ccgtcggaga     1380

ccgtcatcca acccaccatc gaagtggcgc ccggcatcac gatcccggtc ggcccgccga     1440

cgacggtcac gctggcgcct gccccgcccg cgggcggccc gccgggggga cccgagccgg     1500

gtggcggtgt accgccgggg ccgggc                                          1526


<210>  49
<211>  1517
<212>  DNA
<213>  Mycobacterium kansasii

<400>  49
agctcaccgt gtccgagggt gcgttgctgg cggcgcttat caggcgaccg tccacgctgg       60

acccggcggt cgacccggaa ggtgcagtcg cgcggtggaa ctgggtgctc gacggcatgg      120

tcgagaccaa ggccctgtcc gcccaggacc gggctgaaca gcagttcccc aagaccgtcc      180

cgccggagca ggcccgcgcg gaaaaccaga ccaccggccc caacggcctg atcgagcgac      240

aggtgaccaa ggaattactg gagctgttca acatcgatga gcagaccctg aacacccagg      300

ggttgcaggt caccaccacg atcgatccgc aagcccagca ggcggccgaa aaggcggtgg      360

ccaagtacct cgacgggcag gatcccgata tgcgggcggc ggtggtgtcc atcgacccgc      420

acaacggagg cgtgcgcgcg tattacggcg gcgacaacgc caacggctac gacttcgccc      480

aggccggatt gcagaccggg tcgtcgttca aggtgttcgc gttggtggcg gccctcgagc      540

aggggatcgg gctgggctat caggtcgaca gttcaccgct aacggtcgac ggcatcaaga      600

tcaccaatgt cgacggcgag ggttgcggga cgtgcaacat cgccgaggcg ctcaagatgt      660

cgctgaacac ctcctattac cggctgatgc tcaaactgaa gggcggcccc caggccgtcg      720

ccgacgccgc ccaccaagcg ggtgtggccg acagtttccc gggcgtaccc cacaccctgt      780

ccgaggatgg caagggcggg ccgccgaaca atgggatcgt gttgggccag taccaaaccc      840

gggtgatcga tatggcaacg gcgtacgcca cgctggccgc gtcgggcatc tatcaccggc      900

cgcacttcgt ccaaaaggta gtcaacgccg aaggccaggt ccttttcgac gccgccaccc      960

aggacgactc cggtgagcag cgcatcccca aagccgtggc cgacaacgtc accgcggcca     1020

tgatgccgat cgcgggctat tcacgcggcc acaatctggc cggcggccgg ccttcggccg     1080

ccaagaccgg cacggtgcaa ttgggtgata ccaccgccaa caaggacgcc tggatggtcg     1140

gctacacccc gtcgctgtcc accgcggtgt gggtcgggac ggtcaagggc gacgagccgc     1200

tggtgacagc ctcgggcgca gcggtttacg gctcgggtct gccatcggat atctggaagg     1260

cgaccatgga cggcgccctg aagggcactc agaacgagac cttccccaag cccaccgaga     1320

taggcggcta cgccggtgtg ccggcaccgc cgccgcctcc gccgtcagcg gcgccgcctt     1380

cggagaccgt cattcaaccc accgtcgaag tggcgccggg gatcaccatt cccgtcggtc     1440

cgcccaccac cgtgaccctc gcgcccgggc cgccgtccgc accaccgccg gctgacaatc     1500

ccataccgcc accgtga                                                    1517


<210>  50
<211>  1544
<212>  DNA
<213>  Nocardia cyriacigeorgica

<400>  50
agctgaccgt ggccgagggc gcggtgctcg cggccactat ccagctgccg tcggcgttgg       60

atccggagca gaaccccgag ggcgccaagg cccgctggaa ctacgtgctc gacggcatgg      120

tgtcggaggg caatctgccc gccgccgaac gcaagtcgat gcagtacccg gcggtgcgtc      180

cgctggcctc gctcggcgac aaggccaacg acgacggccc cgagggcttg atcaagcagc      240

aggtgctgcg cgagctgtcg gaagcgggca tcagcgagca gcagctcaac accgcgggct      300

tgcagatcac caccaccatc gatccgaagg cgcagcaggc cgcgctcgat gcggtggccg      360

agaacatgca gggcgagccc gagaagctgc gcaccgccgt ggtctcgatc gatccgaaat      420

ccggtgcggt gcgcgcctac tacggcggca aggacggcca gggctacgac ttcgccaacg      480

cgggcttgca gaccggttcg tcgttcaagg tgttcggcct ggcgcagaac ctggagatgg      540

gcatcccgct gtcgcagatg tacgacagct cgccgctcac cgtgcacggc atcaagatca      600

ccaacgtcga gggtgagtcc tgcggcatgt gcaccatcgc cgaggcgctc aagcgttcgc      660

tgaacaccag cttctaccgc atgcagctgg atatgcagaa cggcccgcag aagatcgccg      720

atatggcgca caagctgggc attccggaag agatcccggg cgtcggcaag accctgaccg      780

aaccggacgg ctccggcccg aacaacggca tcgtgctggg ccagtaccag gcgcgagtgc      840

tcgatatggc ttccgcctac gcgactctcg cggcgtcggg cgtctaccac aagccgcact      900

tcgtgcagcg cgtggtgacc gccgacggtg aggtgctgct cgatcgcggt gaggtcgccg      960

gcgagcagcg cgtctcggct gccgtggccg acaacgtcac cgcggcgatg aagccgatcg     1020

cggcctactc ccgcaaccac ggcctggccg gtggccggga gtcggcagcc aagaccggta     1080

ccgcccagct cggcgacacc ggcgagaaca aggacgcctg gatggtcggc tacacgccgt     1140

cgctgtccac cgcggtctgg gtcggcaccg aacagggtga gccgctgcgc aattacggcg     1200

gcgcgatgat ctacggctcc agcctgccct cggacatctg gaaggacacc atggacggcg     1260

cgctcgaggg cacgccgaag gagaccttcc ccaagcccgc ccccatcaag ggccaggcgg     1320

gtgtgccgga gtggaccgcg ccgtacaccg cgccgtcgac caccgaggct cccccgttcc     1380

agccgccagt ggtgatcacc ccgagccagg tggagatcct gcccggcatc accatccctg     1440

tccccggcgt gcaaccgaac ccgcaggcgc aggtgcggcc gcaaccgcag cagccgtcga     1500

accccggccc gctgccgggg cagccgaccg caccgccgga gggc                      1544


