                                                                     
                                                                     
                                                                     
                                             
                                SEQUENCE LISTING

<110> Roche Diagnostics GmbH
      F. Hoffmann-La Roche AG

<120> Accurate and Fast Mapping of Targeted Sequencing Reads

<130> 31345 WO-KOE

<150> US 13/689314 
<151> 2012-11-29

<160> 12

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 206
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic reference sequence 200 target region of the genome

<400> 1
gggagagcag gcagcgggcg gcggggagca gcatggagcc ggcggcgggg agcagcatgg 60
agccttcggc tgactggctg gccacggccg cggcccgggg tcgggtagag gaggtgcggg 120
cgctgctgga ggcgggggcg ctgcccaacg caccgaatag ttacggtcgg aggccgatcc 180
aggtgggtag agggtctgca gcggga                                      206

<210> 2
<211> 242
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic filtered sequence read 250

<400> 2
gggagagcag gcagctgagg tggagtacag agcccaccag ccccgccgtc cgggagcgct 60
gcgcttctcc gaggcctgat gagtatggac gctgctttgg ctttgggtta ggagaagggc 120
actgggagca cgcagtaggt gctcgagtgg ctgagtggca ctgggctgag gagaacacac 180
agagccaggt ccagtcttct ggaggcagga ggtgggcgcc agggacgggg tctgcagcgg 240
ga                                                                242

<210> 3
<211> 248
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence read 310

<400> 3
tttttttgta aatcatctgt gaatccagag gggaaaaata tgacaaagaa agctatataa 60
gatattattt tattttacag agtaacagac tagctagaga caatgaatta agggaaaatg 120
acaaagaaca gctcaaagca atttctacac gagatcctct ctctgaaatc actgcgcagg 180
agaaagattt tctatggacc acaggtaagt gctaaaatgg agattctctg tttctttttc 240
tttattac                                                          248

<210> 4
<211> 249
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic target sequence 320, target region

<400> 4
tttttctgta aatcatctgt gaatccagag gggaaaaata tgacaaagaa agctatataa 60
gatattattt tattttacag agtaacagac tagctagaga caatgaatta agggaaaatg 120
acaaagaaca gctcaaagca atttctacac gagatcctct ctctgaaatc actgagcagg 180
agaaagattt tctatggagt cacaggtaag tgctaaaatg gagattctct gtttcttttt 240
ctttattac                                                         249

<210> 5
<211> 217
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic target sequence 420, target region

<400> 5
ctggctctga ccattctgtt ctctctggca ggtcatgatg atgggcagcg cccgagtggc 60
ggagctgctg ctgctccacg gcgcggagcc caactgcgcc gaccccgcca ctctcacccg 120
acccgtgcac gacgctgccc gggagggctt cctggacacg ctggtggtgc tgcaccgggc 180
cggggcgcgg ctggacgtgc gcgatgcctg gggccgt                          217

<210> 6
<211> 217
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence read 410

<400> 6
ctggctctga ccactctgct ctctctggca ggtcatgatg atgggcagcg cccgcgtggc 60
ggagctgctg ctgctccacg gcgcggagcc caactgcgca gaccctgcca ctctcacccg 120
accggtgcat gatgctgccc gggagggctt cctggacacg ctggtggtgc tgcaccgggc 180
cggggcgcgg ctggacgtgc gcgatgcctg gggtcgt                          217

<210> 7
<211> 184
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic target sequence 520, target region

<400> 7
acagttgcac aatatccttt tgaagaccat aacccaccac agctagaact tatcaaaccc 60
ttttgtgaag atcttgacca atggctaagt gaagatgaca atcatgttgc agcaattcac 120
tgtaaagctg gaaagggacg aactggtgta atgatatgtg catatttatt acatcggggc 180
aaat                                                              184

<210> 8
<211> 184
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence read 510

<400> 8
acagttgcgc aatatccttt tgaagaccat aacccaccac agctagaact tatcaaaccc 60
ttttgtgaag atcttgacca atggctaagt gaagatgaca atcatgttgc agcaattcac 120
tgtaaagctg gaaagggacg aactggtata atgatttatg catatttatt acatcggggc 180
aaat                                                              184

<210> 9
<211> 14
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic EGFR exon 19 positions 2237-2248

<400> 9
aattaagaga agcc                                                   14

<210> 10
<211> 14
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic mutant EGFR exon 19 positions 2237-2248

<400> 10
aattaagaga accc                                                   14

<210> 11
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic EGFR exon 19 positions 2237-2250

<400> 11
aattaagaga agcacccg                                               18

<210> 12
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic mutant EGFR exon 19 positions 2237-2250

<400> 12
aattaagaga agcccccg                                               18


