                         SEQUENCE LISTING

<110>  MedImmune LLC
 
<120>  Swine Influenza Hemagglutinin and Neuraminidase Variants

<130>  FLU-117P1

<160>  16    

<170>  PatentIn version 3.5

<210>  1
<211>  549
<212>  PRT
<213>  H1N1 swine influenza virus


<220>
<221>  MISC_FEATURE
<222>  (125)..(125)
<223>  Xaa = N or D

<220>
<221>  MISC_FEATURE
<222>  (127)..(127)
<223>  Xaa = D or E

<220>
<221>  MISC_FEATURE
<222>  (209)..(209)
<223>  Xaa = K or E

<400>  1

Asp Thr Leu Cys Ile Gly Tyr His Ala Asn Asn Ser Thr Asp Thr Val 
1               5                   10                  15      


Asp Thr Val Leu Glu Lys Asn Val Thr Val Thr His Ser Val Asn Leu 
            20                  25                  30          


Leu Glu Asp Lys His Asn Gly Lys Leu Cys Lys Leu Arg Gly Val Ala 
        35                  40                  45              


Pro Leu His Leu Gly Lys Cys Asn Ile Ala Gly Trp Ile Leu Gly Asn 
    50                  55                  60                  


Pro Glu Cys Glu Ser Leu Ser Thr Ala Ser Ser Trp Ser Tyr Ile Val 
65                  70                  75                  80  


Glu Thr Pro Ser Ser Asp Asn Gly Thr Cys Tyr Pro Gly Asp Phe Ile 
                85                  90                  95      


Asp Tyr Glu Glu Leu Arg Glu Gln Leu Ser Ser Val Ser Ser Phe Glu 
            100                 105                 110         


Arg Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Pro Xaa His Xaa Ser 
        115                 120                 125             


Asn Lys Gly Val Thr Ala Ala Cys Pro His Ala Gly Ala Lys Ser Phe 
    130                 135                 140                 


Tyr Lys Asn Leu Ile Trp Leu Val Lys Lys Gly Asn Ser Tyr Pro Lys 
145                 150                 155                 160 


Leu Ser Lys Ser Tyr Ile Asn Asp Lys Gly Lys Glu Val Leu Val Leu 
                165                 170                 175     


Trp Gly Ile His His Pro Ser Thr Ser Ala Asp Gln Gln Ser Leu Tyr 
            180                 185                 190         


Gln Asn Ala Asp Ala Tyr Val Phe Val Gly Ser Ser Arg Tyr Ser Lys 
        195                 200                 205             


Xaa Phe Lys Pro Glu Ile Ala Ile Arg Pro Lys Val Arg Asp Gln Glu 
    210                 215                 220                 


Gly Arg Met Asn Tyr Tyr Trp Thr Leu Val Glu Pro Gly Asp Lys Ile 
225                 230                 235                 240 


Thr Phe Glu Ala Thr Gly Asn Leu Val Val Pro Arg Tyr Ala Phe Ala 
                245                 250                 255     


Met Glu Arg Asn Ala Gly Ser Gly Ile Ile Ile Ser Asp Thr Pro Val 
            260                 265                 270         


His Asp Cys Asn Thr Thr Cys Gln Thr Pro Lys Gly Ala Ile Asn Thr 
        275                 280                 285             


Ser Leu Pro Phe Gln Asn Ile His Pro Ile Thr Ile Gly Lys Cys Pro 
    290                 295                 300                 


Lys Tyr Val Lys Ser Thr Lys Leu Arg Leu Ala Thr Gly Leu Arg Asn 
305                 310                 315                 320 


Ile Pro Ser Ile Gln Ser Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 
                325                 330                 335     


Ile Glu Gly Gly Trp Thr Gly Met Val Asp Gly Trp Tyr Gly Tyr His 
            340                 345                 350         


His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Leu Lys Ser Thr 
        355                 360                 365             


Gln Asn Ala Ile Asp Glu Ile Thr Asn Lys Val Asn Ser Val Ile Glu 
    370                 375                 380                 


Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn His Leu 
385                 390                 395                 400 


Glu Lys Arg Ile Glu Asn Leu Asn Lys Lys Val Asp Asp Gly Phe Leu 
                405                 410                 415     


Asp Ile Trp Thr Tyr Asn Ala Glu Leu Leu Val Leu Leu Glu Asn Glu 
            420                 425                 430         


Arg Thr Leu Asp Tyr His Asp Ser Asn Val Lys Asn Leu Tyr Glu Lys 
        435                 440                 445             


Val Arg Ser Gln Leu Lys Asn Asn Ala Lys Glu Ile Gly Asn Gly Cys 
    450                 455                 460                 


Phe Glu Phe Tyr His Lys Cys Asp Asn Thr Cys Met Glu Ser Val Lys 
465                 470                 475                 480 


Asn Gly Thr Tyr Asp Tyr Pro Lys Tyr Ser Glu Glu Ala Lys Leu Asn 
                485                 490                 495     


Arg Glu Glu Ile Asp Gly Val Lys Leu Glu Ser Thr Arg Ile Tyr Gln 
            500                 505                 510         


Ile Leu Ala Ile Tyr Ser Thr Val Ala Ser Ser Leu Val Leu Val Val 
        515                 520                 525             


Ser Leu Gly Ala Ile Ser Phe Trp Met Cys Ser Asn Gly Ser Leu Gln 
    530                 535                 540                 


Cys Arg Ile Cys Ile 
545                 


<210>  2
<211>  549
<212>  PRT
<213>  H1N1 swine influenza virus

<400>  2

Asp Thr Leu Cys Ile Gly Tyr His Ala Asn Asn Ser Thr Asp Thr Val 
1               5                   10                  15      


Asp Thr Val Leu Glu Lys Asn Val Thr Val Thr His Ser Val Asn Leu 
            20                  25                  30          


Leu Glu Asp Lys His Asn Gly Lys Leu Cys Lys Leu Arg Gly Val Ala 
        35                  40                  45              


Pro Leu His Leu Gly Lys Cys Asn Ile Ala Gly Trp Ile Leu Gly Asn 
    50                  55                  60                  


Pro Glu Cys Glu Ser Leu Ser Thr Ala Ser Ser Trp Ser Tyr Ile Val 
65                  70                  75                  80  


Glu Thr Ser Ser Ser Asp Asn Gly Thr Cys Tyr Pro Gly Asp Phe Ile 
                85                  90                  95      


Asp Tyr Glu Glu Leu Arg Glu Gln Leu Ser Ser Val Ser Ser Phe Glu 
            100                 105                 110         


Arg Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Pro Asp His Glu Ser 
        115                 120                 125             


Asn Lys Gly Val Thr Ala Ala Cys Pro His Ala Gly Ala Lys Ser Phe 
    130                 135                 140                 


Tyr Lys Asn Leu Ile Trp Leu Val Lys Lys Gly Asn Ser Tyr Pro Lys 
145                 150                 155                 160 


Leu Ser Lys Ser Tyr Ile Asn Asp Lys Gly Lys Glu Val Leu Val Leu 
                165                 170                 175     


Trp Gly Ile His His Pro Ser Thr Ser Ala Asp Gln Gln Ser Leu Tyr 
            180                 185                 190         


Gln Asn Ala Asp Ala Tyr Val Phe Val Gly Thr Ser Arg Tyr Ser Lys 
        195                 200                 205             


Lys Phe Lys Pro Glu Ile Ala Ile Arg Pro Lys Val Arg Asp Gln Glu 
    210                 215                 220                 


Gly Arg Met Asn Tyr Tyr Trp Thr Leu Val Glu Pro Gly Asp Lys Ile 
225                 230                 235                 240 


Thr Phe Glu Ala Thr Gly Asn Leu Val Val Pro Arg Tyr Ala Phe Ala 
                245                 250                 255     


Met Glu Arg Asn Ala Gly Ser Gly Ile Ile Ile Ser Asp Thr Pro Val 
            260                 265                 270         


His Asp Cys Asn Thr Thr Cys Gln Thr Pro Lys Gly Ala Ile Asn Thr 
        275                 280                 285             


Ser Leu Pro Phe Gln Asn Ile His Pro Ile Thr Ile Gly Lys Cys Pro 
    290                 295                 300                 


Lys Tyr Val Lys Ser Thr Lys Leu Arg Leu Ala Thr Gly Leu Arg Asn 
305                 310                 315                 320 


Val Pro Ser Ile Gln Ser Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 
                325                 330                 335     


Ile Glu Gly Gly Trp Thr Gly Met Val Asp Gly Trp Tyr Gly Tyr His 
            340                 345                 350         


His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Leu Lys Ser Thr 
        355                 360                 365             


Gln Asn Ala Ile Asp Lys Ile Thr Asn Lys Val Asn Ser Val Ile Glu 
    370                 375                 380                 


Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn His Leu 
385                 390                 395                 400 


Glu Lys Arg Ile Glu Asn Leu Asn Lys Lys Val Asp Asp Gly Phe Leu 
                405                 410                 415     


Asp Ile Trp Thr Tyr Asn Ala Glu Leu Leu Val Leu Leu Glu Asn Glu 
            420                 425                 430         


Arg Thr Leu Asp Tyr His Asp Ser Asn Val Lys Asn Leu Tyr Glu Lys 
        435                 440                 445             


Val Arg Ser Gln Leu Lys Asn Asn Ala Lys Glu Ile Gly Asn Gly Cys 
    450                 455                 460                 


Phe Glu Phe Tyr His Lys Cys Asp Asn Thr Cys Met Glu Ser Val Lys 
465                 470                 475                 480 


Asn Gly Thr Tyr Asp Tyr Pro Lys Tyr Ser Glu Glu Ala Lys Leu Asn 
                485                 490                 495     


Arg Glu Glu Ile Asp Gly Val Lys Leu Glu Ser Thr Arg Ile Tyr Gln 
            500                 505                 510         


Ile Leu Ala Ile Tyr Ser Thr Val Ala Ser Ser Leu Val Leu Val Val 
        515                 520                 525             


Ser Leu Gly Ala Ile Ser Phe Trp Met Cys Ser Asn Gly Ser Leu Gln 
    530                 535                 540                 


Cys Arg Ile Cys Ile 
545                 


<210>  3
<211>  549
<212>  PRT
<213>  H1N1 swine influenza virus


<220>
<221>  MISC_FEATURE
<222>  (124)..(124)
<223>  Xaa = P or L

<220>
<221>  MISC_FEATURE
<222>  (125)..(125)
<223>  Xaa = N or D

<220>
<221>  MISC_FEATURE
<222>  (127)..(127)
<223>  Xaa = D or E

<220>
<221>  MISC_FEATURE
<222>  (209)..(209)
<223>  Xaa = K or E

<400>  3

Asp Thr Leu Cys Ile Gly Tyr His Ala Asn Asn Ser Thr Asp Thr Val 
1               5                   10                  15      


Asp Thr Val Leu Glu Lys Asn Val Thr Val Thr His Ser Val Asn Leu 
            20                  25                  30          


Leu Glu Asp Lys His Asn Gly Lys Leu Cys Lys Leu Arg Gly Val Ala 
        35                  40                  45              


Pro Leu His Leu Gly Lys Cys Asn Ile Ala Gly Trp Ile Leu Gly Asn 
    50                  55                  60                  


Pro Glu Cys Glu Ser Leu Ser Thr Ala Ser Ser Trp Ser Tyr Ile Val 
65                  70                  75                  80  


Glu Thr Ser Ser Ser Asp Asn Gly Thr Cys Tyr Pro Gly Asp Phe Ile 
                85                  90                  95      


Asn Tyr Glu Glu Leu Arg Glu Gln Leu Ser Ser Val Ser Ser Phe Glu 
            100                 105                 110         


Arg Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Xaa Xaa His Xaa Ser 
        115                 120                 125             


Asn Lys Gly Val Thr Ala Ala Cys Pro His Ala Gly Ala Lys Ser Phe 
    130                 135                 140                 


Tyr Lys Asn Leu Ile Trp Leu Val Lys Lys Gly Asn Ser Tyr Pro Lys 
145                 150                 155                 160 


Leu Ser Lys Ser Tyr Ile Asn Asp Lys Gly Lys Glu Val Leu Val Leu 
                165                 170                 175     


Trp Gly Ile His His Pro Ser Thr Ser Ala Asp Gln Gln Ser Leu Tyr 
            180                 185                 190         


Gln Asn Ala Asp Ala Tyr Val Phe Val Gly Thr Ser Arg Tyr Ser Lys 
        195                 200                 205             


Xaa Phe Lys Pro Glu Ile Ala Ile Arg Pro Lys Val Arg Asp Gln Glu 
    210                 215                 220                 


Gly Arg Met Asn Tyr Tyr Trp Thr Leu Val Glu Pro Gly Asp Lys Ile 
225                 230                 235                 240 


Thr Phe Glu Ala Thr Gly Asn Leu Val Val Pro Arg Tyr Ala Phe Ala 
                245                 250                 255     


Met Glu Arg Asn Ala Gly Ser Gly Ile Ile Ile Ser Asp Thr Pro Val 
            260                 265                 270         


His Asp Cys Asn Thr Thr Cys Gln Thr Pro Lys Gly Ala Ile Asn Thr 
        275                 280                 285             


Ser Leu Pro Phe Gln Asn Ile His Pro Ile Thr Ile Gly Lys Cys Pro 
    290                 295                 300                 


Lys Tyr Val Lys Ser Thr Lys Leu Arg Leu Ala Thr Gly Leu Arg Asn 
305                 310                 315                 320 


Val Pro Ser Ile Gln Ser Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 
                325                 330                 335     


Ile Glu Gly Gly Trp Thr Gly Met Val Asp Gly Trp Tyr Gly Tyr His 
            340                 345                 350         


His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Leu Lys Ser Thr 
        355                 360                 365             


Gln Asn Ala Ile Asp Lys Ile Thr Asn Lys Val Asn Ser Val Ile Glu 
    370                 375                 380                 


Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn His Leu 
385                 390                 395                 400 


Glu Lys Arg Ile Glu Asn Leu Asn Lys Lys Val Asp Asp Gly Phe Leu 
                405                 410                 415     


Asp Ile Trp Thr Tyr Asn Ala Glu Leu Leu Val Leu Leu Glu Asn Glu 
            420                 425                 430         


Arg Thr Leu Asp Tyr His Asp Ser Asn Val Lys Asn Leu Tyr Glu Lys 
        435                 440                 445             


Val Arg Ser Gln Leu Lys Asn Asn Ala Lys Glu Ile Gly Asn Gly Cys 
    450                 455                 460                 


Phe Glu Phe Tyr His Lys Cys Asp Asn Thr Cys Met Glu Ser Val Lys 
465                 470                 475                 480 


Asn Gly Thr Tyr Asp Tyr Pro Lys Tyr Ser Glu Glu Ala Lys Leu Asn 
                485                 490                 495     


Arg Glu Glu Ile Asp Gly Val Lys Leu Glu Ser Thr Arg Ile Tyr Gln 
            500                 505                 510         


Ile Leu Ala Ile Tyr Ser Thr Val Ala Ser Ser Leu Val Leu Val Val 
        515                 520                 525             


Ser Leu Gly Ala Ile Ser Phe Trp Met Cys Ser Asn Gly Ser Leu Gln 
    530                 535                 540                 


Cys Arg Ile Cys Ile 
545                 


<210>  4
<211>  549
<212>  PRT
<213>  H1N1 swine influenza virus


<220>
<221>  MISC_FEATURE
<222>  (125)..(125)
<223>  Xaa = N or D

<220>
<221>  MISC_FEATURE
<222>  (127)..(127)
<223>  Xaa = D or E

<220>
<221>  MISC_FEATURE
<222>  (209)..(209)
<223>  Xaa = K or E

<400>  4

Asp Thr Leu Cys Ile Gly Tyr His Ala Asn Asn Ser Thr Asp Thr Val 
1               5                   10                  15      


Asp Thr Val Leu Glu Lys Asn Val Thr Val Thr His Ser Val Asn Leu 
            20                  25                  30          


Leu Glu Asp Lys His Asn Gly Lys Leu Cys Lys Leu Arg Gly Val Ala 
        35                  40                  45              


Pro Leu His Leu Gly Lys Cys Asn Ile Ala Gly Trp Ile Leu Gly Asn 
    50                  55                  60                  


Pro Glu Cys Glu Ser Leu Ser Thr Ala Ser Ser Trp Ser Tyr Ile Val 
65                  70                  75                  80  


Glu Thr Ser Ser Ser Asp Asn Gly Thr Cys Tyr Pro Gly Asp Phe Ile 
                85                  90                  95      


Asn Tyr Glu Glu Leu Arg Glu Gln Leu Ser Ser Val Ser Ser Phe Glu 
            100                 105                 110         


Arg Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Pro Xaa His Xaa Ser 
        115                 120                 125             


Asn Lys Gly Val Thr Ala Ala Cys Pro His Ala Gly Ala Lys Ser Phe 
    130                 135                 140                 


Tyr Lys Asn Leu Ile Trp Leu Val Lys Lys Gly Asn Ser Tyr Pro Lys 
145                 150                 155                 160 


Leu Ser Lys Ser Tyr Ile Asn Asp Lys Gly Lys Glu Val Leu Val Leu 
                165                 170                 175     


Trp Gly Ile His His Pro Ser Thr Ser Ala Asp Gln Gln Ser Leu Tyr 
            180                 185                 190         


Gln Asn Ala Asp Ala Tyr Val Phe Val Gly Thr Ser Lys Tyr Ser Lys 
        195                 200                 205             


Xaa Phe Lys Pro Glu Ile Ala Val Arg Pro Lys Val Arg Asp Gln Glu 
    210                 215                 220                 


Gly Arg Met Asn Tyr Tyr Trp Thr Leu Val Glu Pro Gly Asp Lys Ile 
225                 230                 235                 240 


Thr Phe Glu Ala Thr Gly Asn Leu Leu Val Pro Arg Tyr Ala Phe Ala 
                245                 250                 255     


Met Glu Arg Asn Ala Gly Ser Gly Ile Ile Ile Ser Asp Thr Pro Val 
            260                 265                 270         


His Asp Cys Asn Thr Thr Cys Gln Thr Pro Glu Gly Ala Ile Asn Thr 
        275                 280                 285             


Ser Leu Pro Phe Gln Asn Ile His Pro Ile Thr Leu Gly Lys Cys Pro 
    290                 295                 300                 


Lys Tyr Val Lys Ser Thr Lys Leu Arg Leu Ala Thr Gly Leu Arg Asn 
305                 310                 315                 320 


Val Pro Ser Ile Gln Ser Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 
                325                 330                 335     


Ile Glu Gly Gly Trp Thr Gly Met Val Asp Gly Trp Tyr Gly Tyr His 
            340                 345                 350         


His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Leu Lys Ser Thr 
        355                 360                 365             


Gln Asn Ala Ile Asp Lys Ile Thr Asn Lys Val Asn Ser Val Ile Glu 
    370                 375                 380                 


Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn His Leu 
385                 390                 395                 400 


Glu Lys Arg Ile Glu Asn Leu Asn Lys Lys Val Asp Asp Gly Phe Leu 
                405                 410                 415     


Asp Ile Trp Thr Tyr Asn Ala Glu Leu Leu Val Leu Leu Glu Asn Glu 
            420                 425                 430         


Arg Thr Leu Asp Tyr His Asp Ser Asn Val Lys Asn Leu Tyr Glu Lys 
        435                 440                 445             


Val Arg Ser Gln Leu Lys Asn Asn Ala Lys Glu Ile Gly Asn Gly Cys 
    450                 455                 460                 


Phe Glu Phe Tyr His Lys Cys Asp Asn Thr Cys Met Glu Ser Val Lys 
465                 470                 475                 480 


Asn Gly Thr Tyr Asp Tyr Pro Lys Tyr Ser Glu Glu Ala Lys Leu Asn 
                485                 490                 495     


Arg Glu Glu Ile Asp Gly Val Lys Leu Glu Ser Thr Arg Ile Tyr Gln 
            500                 505                 510         


Ile Leu Ala Ile Tyr Ser Thr Val Ala Ser Ser Leu Val Leu Val Val 
        515                 520                 525             


Ser Leu Gly Ala Ile Ser Phe Trp Met Cys Ser Asn Gly Ser Leu Gln 
    530                 535                 540                 


Cys Arg Ile Cys Ile 
545                 


<210>  5
<211>  519
<212>  PRT
<213>  H1N1 swine influenza virus

<400>  5

Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Gly Ser Val Cys Met Thr 
1               5                   10                  15      


Ile Gly Met Ala Asn Leu Ile Leu Gln Ile Gly Asn Ile Ile Ser Ile 
            20                  25                  30          


Trp Ile Ser His Ser Ile Gln Leu Gly Asn Gln Asn Gln Ile Glu Thr 
        35                  40                  45              


Cys Asn Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Ser Ser Val Cys 
    50                  55                  60                  


Met Thr Ile Gly Met Ala Asn Leu Ile Leu Gln Ile Gly Asn Ile Ile 
65                  70                  75                  80  


Ser Ile Trp Ile Ser His Ser Ile Gln Leu Gly Asn Gln Asn Gln Ile 
                85                  90                  95      


Glu Thr Cys Asn Gln Ser Val Ile Thr Tyr Glu Asn Asn Thr Trp Val 
            100                 105                 110         


Asn Gln Thr Tyr Val Asn Ile Ser Asn Thr Asn Phe Ala Ala Gly Gln 
        115                 120                 125             


Ser Val Val Ser Val Lys Leu Ala Gly Asn Ser Ser Leu Cys Pro Val 
    130                 135                 140                 


Ser Gly Trp Ala Ile Tyr Ser Lys Asp Asn Ser Val Arg Ile Gly Ser 
145                 150                 155                 160 


Lys Gly Asp Val Phe Val Ile Arg Glu Pro Phe Ile Ser Cys Ser Pro 
                165                 170                 175     


Leu Glu Cys Arg Thr Phe Phe Leu Thr Gln Gly Ala Leu Leu Asn Asp 
            180                 185                 190         


Lys His Ser Asn Gly Thr Ile Lys Asp Arg Ser Pro Tyr Arg Thr Leu 
        195                 200                 205             


Met Ser Cys Pro Ile Gly Glu Val Pro Ser Pro Tyr Asn Ser Arg Phe 
    210                 215                 220                 


Glu Ser Val Ala Trp Ser Ala Ser Ala Cys His Asp Gly Ile Asn Trp 
225                 230                 235                 240 


Leu Thr Ile Gly Ile Ser Gly Pro Asp Asn Gly Ala Val Ala Val Leu 
                245                 250                 255     


Lys Tyr Asn Gly Ile Ile Thr Asp Thr Ile Lys Ser Trp Arg Asn Asn 
            260                 265                 270         


Ile Leu Arg Thr Gln Glu Ser Glu Cys Ala Cys Val Asn Gly Ser Cys 
        275                 280                 285             


Phe Thr Val Met Thr Asp Gly Pro Ser Asn Gly Gln Ala Ser Tyr Lys 
    290                 295                 300                 


Ile Phe Arg Ile Glu Lys Gly Lys Ile Val Lys Ser Val Glu Met Asn 
305                 310                 315                 320 


Ala Pro Asn Tyr His Tyr Glu Glu Cys Ser Cys Tyr Pro Asp Ser Ser 
                325                 330                 335     


Glu Ile Thr Cys Val Cys Arg Asp Asn Trp His Gly Ser Asn Arg Pro 
            340                 345                 350         


Trp Val Ser Phe Asn Gln Asn Leu Glu Tyr Gln Ile Gly Tyr Ile Cys 
        355                 360                 365             


Ser Gly Ile Phe Gly Asp Asn Pro Arg Pro Asn Asp Lys Thr Gly Ser 
    370                 375                 380                 


Cys Gly Pro Val Ser Ser Asn Gly Ala Asn Gly Val Lys Gly Phe Ser 
385                 390                 395                 400 


Phe Lys Tyr Gly Asn Gly Val Trp Ile Gly Arg Thr Lys Ser Ile Ser 
                405                 410                 415     


Ser Arg Asn Gly Phe Glu Met Ile Trp Asp Pro Asn Gly Trp Thr Gly 
            420                 425                 430         


Thr Asp Asn Asn Phe Ser Ile Lys Gln Asp Ile Val Gly Ile Asn Glu 
        435                 440                 445             


Trp Ser Gly Tyr Ser Gly Ser Phe Val Gln His Pro Glu Leu Thr Gly 
    450                 455                 460                 


Leu Asp Cys Ile Arg Pro Cys Phe Trp Val Glu Leu Ile Arg Gly Arg 
465                 470                 475                 480 


Pro Lys Glu Asn Thr Ile Trp Thr Ser Gly Ser Ser Ile Ser Phe Cys 
                485                 490                 495     


Gly Val Asn Ser Asp Thr Val Gly Trp Ser Trp Pro Asp Gly Ala Glu 
            500                 505                 510         


Leu Pro Phe Thr Ile Asp Lys 
        515                 


<210>  6
<211>  469
<212>  PRT
<213>  H1N1 swine influenza virus

<400>  6

Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Ser Ser Val Cys Met Thr 
1               5                   10                  15      


Ile Gly Met Ala Asn Leu Ile Leu Gln Ile Gly Asn Ile Ile Ser Ile 
            20                  25                  30          


Trp Ile Ser His Ser Ile Gln Leu Gly Asn Gln Asn Gln Ile Glu Thr 
        35                  40                  45              


Cys Asn Gln Ser Val Ile Thr Tyr Glu Asn Asn Thr Trp Val Asn Gln 
    50                  55                  60                  


Thr Tyr Val Asn Ile Ser Asn Thr Asn Phe Ala Ala Gly Gln Ser Val 
65                  70                  75                  80  


Val Ser Val Lys Leu Ala Gly Asn Ser Ser Leu Cys Pro Val Ser Gly 
                85                  90                  95      


Trp Ala Ile Tyr Ser Lys Asp Asn Ser Ile Arg Ile Gly Ser Lys Gly 
            100                 105                 110         


Asp Val Phe Val Ile Arg Glu Pro Phe Ile Ser Cys Ser Pro Leu Glu 
        115                 120                 125             


Cys Arg Thr Phe Phe Leu Thr Gln Gly Ala Leu Leu Asn Asp Lys His 
    130                 135                 140                 


Ser Asn Gly Thr Ile Lys Asp Arg Ser Pro Tyr Arg Thr Leu Met Ser 
145                 150                 155                 160 


Cys Pro Ile Gly Glu Val Pro Ser Pro Tyr Asn Ser Arg Phe Glu Ser 
                165                 170                 175     


Val Ala Trp Ser Ala Ser Ala Cys His Asp Gly Ile Asn Trp Leu Thr 
            180                 185                 190         


Ile Gly Ile Ser Gly Pro Asp Asn Gly Ala Val Ala Val Leu Lys Tyr 
        195                 200                 205             


Asn Gly Ile Ile Thr Asp Thr Ile Lys Ser Trp Arg Asn Asn Ile Leu 
    210                 215                 220                 


Arg Thr Gln Glu Ser Glu Cys Ala Cys Val Asn Gly Ser Cys Phe Thr 
225                 230                 235                 240 


Val Met Thr Asp Gly Pro Ser Asp Gly Gln Ala Ser Tyr Lys Ile Phe 
                245                 250                 255     


Arg Ile Glu Lys Gly Lys Ile Val Lys Ser Val Glu Met Asn Ala Pro 
            260                 265                 270         


Asn Tyr His Tyr Glu Glu Cys Ser Cys Tyr Pro Asp Ser Ser Glu Ile 
        275                 280                 285             


Thr Cys Val Cys Arg Asp Asn Trp His Gly Ser Asn Arg Pro Trp Val 
    290                 295                 300                 


Ser Phe Asn Gln Asn Leu Glu Tyr Gln Ile Gly Tyr Ile Cys Ser Gly 
305                 310                 315                 320 


Ile Phe Gly Asp Asn Pro Arg Pro Asn Asp Lys Thr Gly Ser Cys Gly 
                325                 330                 335     


Pro Val Ser Ser Asn Gly Ala Asn Gly Val Lys Gly Phe Ser Phe Lys 
            340                 345                 350         


Tyr Gly Asn Gly Val Trp Ile Gly Arg Thr Lys Ser Ile Ser Ser Arg 
        355                 360                 365             


Asn Gly Phe Glu Met Ile Trp Asp Pro Asn Gly Trp Thr Gly Thr Asp 
    370                 375                 380                 


Asn Asn Phe Ser Ile Lys Gln Asp Ile Val Gly Ile Asn Glu Trp Ser 
385                 390                 395                 400 


Gly Tyr Ser Gly Ser Phe Val Gln His Pro Glu Leu Thr Gly Leu Asp 
                405                 410                 415     


Cys Ile Arg Pro Cys Phe Trp Val Glu Leu Ile Arg Gly Arg Pro Lys 
            420                 425                 430         


Glu Asn Thr Ile Trp Thr Ser Gly Ser Ser Ile Ser Phe Cys Gly Val 
        435                 440                 445             


Asn Ser Asp Thr Val Gly Trp Ser Trp Pro Asp Gly Ala Glu Leu Pro 
    450                 455                 460                 


Phe Thr Ile Asp Lys 
465                 


<210>  7
<211>  469
<212>  PRT
<213>  H1N1 swine influenza virus

<400>  7

Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Gly Ser Val Cys Ile Thr 
1               5                   10                  15      


Ile Gly Met Ala Asn Leu Ile Leu Gln Ile Gly Asn Ile Ile Ser Ile 
            20                  25                  30          


Trp Ile Ser His Ser Ile Gln Leu Gly Asn Gln Asn Gln Ile Glu Thr 
        35                  40                  45              


Cys Asn Gln Ser Val Ile Thr Tyr Glu Asn Asn Thr Trp Val Asn Gln 
    50                  55                  60                  


Thr Tyr Val Asn Ile Ser Asn Thr Asn Phe Ala Ala Gly Gln Ser Val 
65                  70                  75                  80  


Val Ser Val Lys Leu Ala Gly Asn Ser Ser Leu Cys Pro Val Ser Gly 
                85                  90                  95      


Trp Ala Ile Tyr Ser Lys Asp Asn Ser Ile Arg Ile Gly Ser Lys Gly 
            100                 105                 110         


Asp Val Phe Val Ile Arg Glu Pro Phe Ile Ser Cys Ser Pro Leu Glu 
        115                 120                 125             


Cys Arg Thr Phe Phe Leu Thr Gln Gly Ala Leu Leu Asn Asp Lys His 
    130                 135                 140                 


Ser Asn Gly Thr Ile Lys Asp Arg Ser Pro Tyr Arg Thr Leu Met Ser 
145                 150                 155                 160 


Cys Pro Ile Gly Glu Val Pro Ser Pro Tyr Asn Ser Arg Phe Glu Ser 
                165                 170                 175     


Val Ala Trp Ser Ala Ser Ala Cys His Asp Gly Ile Ser Trp Leu Thr 
            180                 185                 190         


Ile Gly Ile Ser Gly Pro Asp Asn Gly Ala Val Ala Val Leu Lys Tyr 
        195                 200                 205             


Asn Gly Ile Ile Thr Asp Thr Ile Lys Ser Trp Arg Asn Asn Ile Leu 
    210                 215                 220                 


Arg Thr Gln Glu Ser Glu Cys Ala Cys Val Asn Gly Ser Cys Phe Thr 
225                 230                 235                 240 


Val Met Thr Asp Gly Pro Ser Asp Gly Gln Ala Ser Tyr Lys Ile Phe 
                245                 250                 255     


Arg Ile Glu Lys Gly Lys Ile Val Lys Ser Val Glu Met Asn Ala Pro 
            260                 265                 270         


Asn Tyr His Tyr Glu Glu Cys Ser Cys Tyr Pro Asp Ser Ser Glu Ile 
        275                 280                 285             


Thr Cys Val Cys Arg Asp Asn Trp His Gly Ser Asn Arg Pro Trp Val 
    290                 295                 300                 


Ser Phe Asn Gln Asn Leu Glu Tyr Gln Ile Gly Tyr Ile Cys Ser Gly 
305                 310                 315                 320 


Ile Phe Gly Asp Asn Pro Arg Pro Asn Asp Lys Thr Gly Ser Cys Gly 
                325                 330                 335     


Pro Val Ser Ser Asn Gly Ala Asn Gly Val Lys Gly Phe Ser Phe Lys 
            340                 345                 350         


Tyr Gly Asn Gly Val Trp Ile Gly Arg Thr Lys Ser Ile Ser Ser Arg 
        355                 360                 365             


Asn Gly Phe Glu Met Ile Trp Asp Pro Asn Gly Trp Thr Gly Thr Asp 
    370                 375                 380                 


Asn Asn Phe Ser Ile Lys Gln Asp Ile Val Gly Ile Asn Glu Trp Ser 
385                 390                 395                 400 


Gly Tyr Ser Gly Ser Phe Val Gln His Pro Glu Leu Thr Gly Leu Asp 
                405                 410                 415     


Cys Ile Lys Pro Cys Phe Trp Val Glu Leu Ile Arg Gly Arg Pro Lys 
            420                 425                 430         


Glu Asn Thr Ile Trp Thr Ser Gly Ser Ser Ile Ser Phe Cys Gly Val 
        435                 440                 445             


Asn Ser Asp Thr Val Gly Trp Ser Trp Pro Asp Gly Ala Glu Leu Pro 
    450                 455                 460                 


Phe Thr Ile Asp Lys 
465                 


<210>  8
<211>  469
<212>  PRT
<213>  H1N1 swine influenza virus


<220>
<221>  MISC_FEATURE
<222>  (222)..(222)
<223>  Xaa = S or N

<220>
<221>  MISC_FEATURE
<222>  (241)..(241)
<223>  Xaa = I or V

<220>
<221>  MISC_FEATURE
<222>  (369)..(369)
<223>  Xaa = K or N

<400>  8

Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Gly Ser Val Cys Met Thr 
1               5                   10                  15      


Ile Gly Met Ala Asn Leu Ile Leu Gln Ile Gly Asn Ile Ile Ser Ile 
            20                  25                  30          


Trp Ile Ser His Ser Ile Gln Leu Gly Asn Gln Ser Gln Ile Glu Thr 
        35                  40                  45              


Cys Asn Gln Ser Val Ile Thr Tyr Glu Asn Asn Thr Trp Val Asn Gln 
    50                  55                  60                  


Thr Tyr Val Asn Ile Ser Asn Thr Asn Phe Ala Ala Gly Gln Ser Val 
65                  70                  75                  80  


Val Ser Val Lys Leu Ala Gly Asn Ser Ser Leu Cys Pro Val Ser Gly 
                85                  90                  95      


Trp Ala Ile Tyr Ser Lys Asp Asn Ser Ile Arg Ile Gly Ser Lys Gly 
            100                 105                 110         


Asp Val Phe Val Ile Arg Glu Pro Phe Ile Ser Cys Ser Pro Leu Glu 
        115                 120                 125             


Cys Arg Thr Phe Phe Leu Thr Gln Gly Ala Leu Leu Asn Asp Lys His 
    130                 135                 140                 


Ser Asn Gly Thr Ile Lys Asp Arg Ser Pro Tyr Arg Thr Leu Met Ser 
145                 150                 155                 160 


Cys Pro Ile Gly Glu Val Pro Ser Pro Tyr Asn Ser Arg Phe Glu Ser 
                165                 170                 175     


Val Ala Trp Ser Ala Ser Ala Cys His Asp Gly Ile Asn Trp Leu Thr 
            180                 185                 190         


Ile Gly Ile Ser Gly Pro Asp Asn Gly Ala Val Ala Val Leu Lys Tyr 
        195                 200                 205             


Asn Gly Ile Ile Thr Asp Thr Ile Lys Ser Trp Arg Asn Xaa Ile Leu 
    210                 215                 220                 


Arg Thr Gln Glu Ser Glu Cys Ala Cys Val Asn Gly Ser Cys Phe Thr 
225                 230                 235                 240 


Xaa Met Thr Asp Gly Pro Ser Asp Gly Gln Ala Ser Tyr Lys Ile Phe 
                245                 250                 255     


Arg Ile Glu Lys Gly Lys Ile Val Lys Ser Val Glu Met Asn Ala Pro 
            260                 265                 270         


Asn Tyr His Tyr Glu Glu Cys Ser Cys Tyr Pro Asp Ser Ser Glu Ile 
        275                 280                 285             


Thr Cys Val Cys Arg Asp Asn Trp His Gly Ser Asn Arg Pro Trp Val 
    290                 295                 300                 


Ser Phe Asn Gln Asn Leu Glu Tyr Gln Ile Gly Tyr Ile Cys Ser Gly 
305                 310                 315                 320 


Ile Phe Gly Asp Asn Pro Arg Pro Asn Asp Lys Thr Gly Ser Cys Gly 
                325                 330                 335     


Pro Val Ser Ser Asn Gly Ala Asn Gly Val Lys Gly Phe Ser Phe Lys 
            340                 345                 350         


Tyr Gly Asn Gly Val Trp Ile Gly Arg Thr Lys Ser Ile Ser Ser Arg 
        355                 360                 365             


Xaa Gly Phe Glu Met Ile Trp Asp Pro Asn Gly Trp Thr Gly Thr Asp 
    370                 375                 380                 


Asn Asn Phe Ser Ile Lys Gln Asp Ile Val Gly Ile Asn Glu Trp Ser 
385                 390                 395                 400 


Gly Tyr Ser Gly Ser Phe Val Gln His Pro Glu Leu Thr Gly Leu Asp 
                405                 410                 415     


Cys Ile Arg Pro Cys Phe Trp Val Glu Leu Ile Arg Gly Arg Pro Lys 
            420                 425                 430         


Glu Asn Thr Ile Trp Thr Ser Gly Ser Ser Met Ser Phe Cys Gly Val 
        435                 440                 445             


Asn Ser Asp Thr Val Gly Trp Ser Trp Pro Asp Gly Ala Glu Leu Pro 
    450                 455                 460                 


Phe Thr Ile Asp Lys 
465                 


<210>  9
<211>  1772
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  9
agcaaaagca ggggaaaaca aaagcaacaa aaatgaaggc aatactagta gttctgctat       60

atacatttgc aaccgcaaat gcagacacat tatgtatagg ttatcatgcg aacaattcaa      120

cagacactgt agacacagta ctagaaaaga atgtaacagt aacacactct gttaaccttc      180

tagaagacaa gcataacggg aaactatgca aactaagagg ggtagcccca ttgcatttgg      240

gtaaatgtaa cattgctggc tggatcctgg gaaatccaga gtgtgaatca ctctccacag      300

caagctcatg gtcctacatt gtggaaacac ctagttcaga caatggaacg tgttacccag      360

gagatttcat cgattatgag gagctaagag agcaattgag ctcagtgtca tcatttgaaa      420

ggtttgagat attccccaag acaagttcat ggcccaatca tgactcgaac aaaggtgtaa      480

cggcagcatg tcctcatgct ggagcaaaaa gcttctacaa aaatttaata tggctagtta      540

aaaaaggaaa ttcataccca aagctcagca aatcctacat taatgataaa gggaaagaag      600

tcctcgtgct atggggcatt caccatccat ctactagtgc tgaccaacaa agtctctatc      660

agaatgcaga tgcatatgtt tttgtggggt catcaagata cagcaagaag ttcaagccgg      720

aaatagcaat aagacccaaa gtgagggatc aagaagggag aatgaactat tactggacac      780

tagtagagcc gggagacaaa ataacattcg aagcaactgg aaatctagtg gtaccgagat      840

atgcattcgc aatggaaaga aatgctggat ctggtattat catttcagat acaccagtcc      900

acgattgcaa tacaacttgt caaacaccca agggtgctat aaacaccagc ctcccatttc      960

agaatataca tccgatcaca attggaaaat gtccaaaata tgtaaaaagc acaaaattga     1020

gactggccac aggattgagg aatatcccgt ctattcaatc tagaggccta tttggggcca     1080

ttgccggttt cattgaaggg gggtggacag ggatggtaga tggatggtac ggttatcacc     1140

atcaaaatga gcaggggtca ggatatgcag ccgacctgaa gagcacacag aatgccattg     1200

acgagattac taacaaagta aattctgtta ttgaaaagat gaatacacag ttcacagcag     1260

taggtaaaga gttcaaccac ctggaaaaaa gaatagagaa tttaaataaa aaagttgatg     1320

atggtttcct ggacatttgg acttacaatg ccgaactgtt ggttctattg gaaaatgaaa     1380

gaactttgga ctaccacgat tcaaatgtga agaacttata tgaaaaggta agaagccagc     1440

taaaaaacaa tgccaaggaa attggaaacg gctgctttga attttaccac aaatgcgata     1500

acacgtgcat ggaaagtgtc aaaaatggga cttatgacta cccaaaatac tcagaggaag     1560

caaaattaaa cagagaagaa atagatgggg taaagctgga atcaacaagg atttaccaga     1620

ttttggcgat ctattcaact gtcgccagtt cattggtact ggtagtctcc ctgggggcaa     1680

tcagtttctg gatgtgctct aatgggtctc tacagtgtag aatatgtatt taacattagg     1740

atttcagaag catgagaaaa acacccttgt tt                                   1772


<210>  10
<211>  1698
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  10
atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta       60

tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat      120

gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa attatgcaaa      180

ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga      240

aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct      300

agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagaa      360

caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg      420

cccgatcatg aatcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc      480

ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa      540

tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct      600

actagtgctg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca      660

tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa      720

gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa      780

gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct      840

ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag      900

ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt      960

ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct     1020

attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg     1080

atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc     1140

gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt     1200

gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga     1260

atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc     1320

gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag     1380

aacttatatg aaaaggtaag aagccagtta aaaaacaatg ccaaggaaat tggaaacggc     1440

tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact     1500

tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta     1560

aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca     1620

ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta     1680

cagtgtagaa tatgtatt                                                   1698


<210>  11
<211>  1701
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  11
atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta       60

tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat      120

gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa      180

ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga      240

aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct      300

agttcagaca atggaacgtg ttacccagga gatttcatca attatgagga gctaagagag      360

caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg      420

cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc      480

ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa      540

tcctacatta atgataaagg gaaagaagtc ctcgtactat ggggcattca ccatccatct      600

actagtgctg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca      660

tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa      720

gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa      780

gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct      840

ggtattatca tctcagatac accagtccac gattgcaata caacttgtca gacacccaag      900

ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt      960

ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct     1020

attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg     1080

atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc     1140

gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt     1200

gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga     1260

atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc     1320

gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag     1380

aacttatatg aaaaggtaag aagccagtta aaaaacaatg ccaaggaaat tggaaacggc     1440

tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact     1500

tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta     1560

aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca     1620

ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta     1680

cagtgtagaa tatgtattta a                                               1701


<210>  12
<211>  1706
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  12
gacacattat gtataggtta tcatgcgaac aattcaacag acactgtaga cacagtacta       60

gaaaagaatg taacagtaac acactctgtt aaccttctag aagacaagca taacgggaaa      120

ctatgcaaac tgagaggggt agccccattg catttgggta aatgtaacat tgctggctgg      180

atcctgggaa atccagagtg tgaatcactc tccacagcaa gctcatggtc ctacattgtg      240

gaaacatcta gttcagacaa tggaacgtgt tacccaggag atttcatcaa ttatgaggag      300

ctaagagagc aattgagctc agtgtcatca tttgaaaggt ttgagatatt ccccaagaca      360

agttcatggc ccaatcatga ctcgaacaaa ggtgtaacgg cagcatgtcc tcatgctgga      420

gcaaaaagct tctacaaaaa tttaatatgg ctagttaaaa aaggaaattc atacccaaag      480

ctcagcaaat cctacattaa cgataaaggg aaagaagtcc tcgtgctgtg gggaattcac      540

catccatcta ctagtgctga ccaacaaagt ctctatcaga atgcagatgc atatgttttt      600

gtggggacat caaaatacag caagaaattc aagccggaaa tagcagtaag acccaaagtg      660

agggatcaag aagggagaat gaactattac tggacactag tagagccggg agacaaaata      720

acattcgaag caactggaaa tctattggta ccgagatatg cattcgcaat ggaaagaaat      780

gctggatctg gtattatcat ttcagataca ccagtccacg attgcaatac aacttgtcaa      840

acacccgagg gtgctataaa caccagcctc ccatttcaga atatacatcc gatcacactt      900

ggaaaatgtc caaaatatgt aaaaagcaca aaattgagac tggccacagg attgaggaat      960

gtcccgtcta ttcaatctag aggcctattt ggggccattg ccggtttcat tgaagggggg     1020

tggacaggga tggtagatgg atggtacggt tatcaccatc aaaatgagca ggggtcagga     1080

tatgcagccg acctgaagag cacacagaat gccattgaca agattactaa caaagtaaat     1140

tctgttattg aaaagatgaa tacacagttc acagcagtag gtaaagagtt caaccacctg     1200

gaaaaaagaa tagagaattt aaataaaaag gttgatgatg gtttcctgga catttggact     1260

tacaatgccg aactgttggt tctattggaa aatgaaagaa ctttggacta ccacgattca     1320

aatgtgaaaa acttatatga aaaggtaaga agccagttaa aaaacaatgc caaagaaatt     1380

ggaaacggct gctttgaatt ttaccacaaa tgcgataaca cgtgcatgga aagtgtcaaa     1440

aatgggactt atgactaccc aaaatactca gaggaagcaa aattaaacag agaagaaata     1500

gatggggtaa agctggaatc aacaaggatt taccagattt tggcgatcta ttcaactgtc     1560

gccagttcat tggtactggt agtctccctg ggggcaatca gtttctggat gtgctctaat     1620

gggtctctac agtgtagaat atgtatttaa cattaggatt tcagaagcat gagaaaaaca     1680

cccttgtttc tactaatacg aggcag                                          1706


<210>  13
<211>  1410
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  13
atgaatccaa accaaaagat aataaccatt ggttcggtct gtataacaat tggaatggct       60

aacttaatat tacaaattgg aaacataatc tcaatatgga ttagccactc aattcaactt      120

gggaatcaaa atcagattga aacatgcaat caaagcgtca ttacttatga aaacaacact      180

tgggtaaatc agacatatgt taacatcagc aacaccaact ttgctgctgg acagtcagtg      240

gtttccgtga aattagcggg caattcctct ctctgccctg ttagtggatg ggctatatac      300

agtaaagaca acagtataag aatcggttcc aagggggatg tgtttgtcat aagggaacca      360

ttcatatcat gctccccctt ggaatgcaga accttcttct tgactcaagg ggccttgcta      420

aatgacaaac attccaatgg aaccattaaa gacaggagcc catatcgaac cctaatgagc      480

tgtcctattg gtgaagttcc ctctccatac aactcaagat ttgagtcagt cgcttggtca      540

gcaagtgctt gtcatgatgg catcagttgg ctaacaattg gaatttctgg cccagacaat      600

ggggcagtgg ctgtgttaaa gtacaacggc ataataacag acactatcaa gagttggaga      660

aacaatatat tgagaacaca agagtctgaa tgtgcatgtg taaatggttc ttgttttact      720

gtaatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag      780

ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt atcactatga ggaatgctcc      840

tgttatcctg attctagtga aatcacatgt gtgtgcaggg ataactggca tggctcgaat      900

cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga taggatacat atgcagtggg      960

attttcggag acaatccacg ccctaatgat aagacaggca gttgtggtcc agtatcgtct     1020

aatggagcaa atggagtaaa aggattttca ttcaaatacg gcaatggtgt ttggataggg     1080

agaactaaaa gcattagttc aagaaacggt tttgagatga tttgggatcc gaacggatgg     1140

actgggacag acaataactt ctcaataaag caagatatcg taggaataaa tgagtggtca     1200

ggatatagcg ggagttttgt tcagcatcca gaactaacag ggctggattg tataaaacct     1260

tgcttctggg ttgaactaat cagagggcga cccaaagaga acacaatctg gactagcggg     1320

agcagcatat ccttttgtgg tgtaaacagt gacactgtgg gttggtcttg gccagacggt     1380

gctgagttgc catttaccat tgacaagtaa                                      1410


<210>  14
<211>  1410
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  14
atgaatccaa accaaaagat aataaccatt agttcggtct gtatgacaat tggaatggct       60

aacttaatat tacaaattgg aaacataatc tcaatatgga ttagccactc aattcaactt      120

gggaatcaaa atcagattga aacatgcaat caaagcgtca ttacttatga aaacaacact      180

tgggtaaatc agacatatgt taacatcagc aacaccaact ttgctgctgg acagtcagtg      240

gtttccgtga aattagcggg caattcctct ctctgccctg ttagtggatg ggctatatac      300

agtaaagaca acagtataag aatcggttcc aagggggatg tgtttgtcat aagggaacca      360

ttcatatcat gctccccctt ggaatgcaga accttcttct tgactcaagg ggccttgcta      420

aatgacaaac attccaatgg aaccattaaa gacaggagcc catatcgaac cctaatgagc      480

tgtcctattg gtgaagttcc ctctccatac aactcaagat ttgagtcagt cgcttggtca      540

gcaagtgctt gtcatgatgg catcaattgg ctaacaattg gaatttctgg cccagacaat      600

ggggcagtgg ctgtgttaaa gtacaacggc ataataacag acactatcaa gagttggaga      660

aacaatatat tgagaacaca agagtctgaa tgtgcatgtg taaatggttc ttgctttact      720

gtaatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag      780

ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt atcactatga ggaatgctcc      840

tgttatcctg attctagtga aatcacatgt gtgtgcaggg ataactggca tggctcgaat      900

cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga taggatacat atgcagtggg      960

attttcggag acaatccacg ccctaatgat aagacaggca gttgtggtcc agtatcgtct     1020

aatggagcaa atggagtaaa aggattttca ttcaaatacg gcaatggtgt ttggataggg     1080

agaactaaaa gcattagttc aagaaacggt tttgagatga tttgggatcc gaacggatgg     1140

actgggacag acaataactt ctcaataaag caagatatcg taggaataaa tgagtggtca     1200

ggatatagcg ggagttttgt tcagcatcca gaactaacag ggctggattg tataagacct     1260

tgcttctggg ttgaactaat cagagggcga cccaaagaga acacaatctg gactagcggg     1320

agcagcatat ccttttgtgg tgtaaacagt gacactgtgg gttggtcttg gccagacggt     1380

gctgagttgc catttaccat tgacaagtaa                                      1410


<210>  15
<211>  1427
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  15
atgaatccaa accaaaagat aataaccatt ggttcggtct gtatgacaat tggaatggct       60

aacttaatat tacaaattgg aaacataatc tcaatatgga ttagccactc aattcaactt      120

gggaatcaaa gtcagattga aacatgtaat caaagcgtca ttacttatga aaacaacact      180

tgggtaaatc agacatatgt taacatcagc aacaccaact ttgctgctgg acagtcagtg      240

gtttccgtga aattagcggg caattcctct ctctgccctg ttagtggatg ggctatatac      300

agtaaagaca acagtataag aatcggttcc aagggggatg tgtttgtcat aagggaacca      360

ttcatatcat gctccccctt ggaatgcaga accttcttct tgactcaagg ggccttgcta      420

aatgacaaac attccaatgg aaccattaaa gacaggagcc catatcgaac cctaatgagc      480

tgtcctattg gtgaagttcc ctctccatac aactcaagat ttgagtcagt cgcttggtca      540

gcaagtgctt gtcatgatgg catcaattgg ctaacaattg gaatttctgg cccagacaat      600

ggggcagtgg ctgtgttaaa gtacaacggc ataataacag acactatcaa gagttggaga      660

aacagtatat tgagaacaca agagtctgaa tgtgcatgtg taaatggttc ttgctttacc      720

ataatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag      780

ggaaaaatag tcaaatcagt cgaaatgaat gcccctaatt atcactatga ggaatgctcc      840

tgttatcctg attctagtga aatcacttgt gtgtgcaggg ataactggca tggctcgaat      900

cgaccgtggg tgtctttcaa ccagaatctg gaataccaga taggatacat atgcagtggg      960

attttcggag acaatccacg ccctaatgat aagacaggca gttgtggtcc agtatcgtct     1020

aatggagcaa atggagtaaa aggattttca ttcaaatacg gcaatggtgt ttggataggg     1080

agaactaaaa gcattagttc aagaaaaggt tttgagatga tttgggatcc aaacggatgg     1140

actgggacag acaataactt ctcaataaag caagatatcg taggaataaa tgagtggtca     1200

ggatatagcg ggagttttgt tcagcatcca gaactaacag ggctggattg tataagacct     1260

tgcttctggg ttgaactaat cagagggcga cccaaagaga acacaatctg gactagcggg     1320

agcagcatgt ccttttgtgg tgtaaacagt gacactgtgg gttggtcttg gccagacggt     1380

gctgagttgc catttaccat tgacaagtaa tttgttcaaa aaactcc                   1427


<210>  16
<211>  1458
<212>  DNA
<213>  H1N1 swine influenza virus

<400>  16
agcaaaagca ggagtttaaa atgaatccaa accaaaagat aataaccatt ggttcggtct       60

gtatgacaat tggaatggct aacttaatat tacaaattgg aaacataatc tcaatatgga      120

ttagccactc aattcaactt gggaatcaaa atcagattga aacatgcaat caaagcgtca      180

ttacttatga aaacaacact tgggtaaatc agacatatgt taacatcagc aacaccaact      240

ttgctgctgg acagtcagtg gtttccgtga aattagcggg caattcctct ctctgccctg      300

ttagtggatg ggctatatac agtaaagaca acagtgtaag aatcggttcc aagggggatg      360

tgtttgtcat aagggaacca ttcatatcat gctccccctt ggaatgcaga accttcttct      420

tgactcaagg ggccttgcta aatgacaaac attccaatgg aaccattaaa gacaggagcc      480

catatcgaac cctaatgagc tgtcctattg gtgaagttcc ctctccatac aactcaagat      540

ttgagtcagt cgcttggtca gcaagtgctt gtcatgatgg catcaattgg ctaacaattg      600

gaatttctgg cccagacaat ggggcagtgg ctgtgttaaa gtacaacggc ataataacag      660

acactatcaa gagttggaga aacaatatat tgagaacaca agagtctgaa tgtgcatgtg      720

taaatggttc ttgctttact gtaatgaccg atggaccaag taatggacag gcctcataca      780

agatcttcag aatagaaaag ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt      840

atcactatga ggaatgctcc tgttatcctg attctagtga aatcacatgt gtgtgcaggg      900

ataactggca tggctcgaat cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga      960

taggatacat atgcagtggg attttcggag acaatccacg ccctaatgat aagacaggca     1020

gttgtggtcc agtatcgtct aatggagcaa atggagtaaa agggttttca ttcaaatacg     1080

gcaatggtgt ttggataggg agaactaaaa gcattagttc aagaaacggt tttgagatga     1140

tttgggatcc gaacggatgg actgggacag acaataactt ctcaataaag caagatatcg     1200

taggaataaa tgagtggtca ggatatagcg ggagttttgt tcagcatcca gaactaacag     1260

ggctggattg tataagacct tgcttctggg ttgaactaat cagagggcga cccaaagaga     1320

acacaatctg gactagcggg agcagcatat ccttttgtgg tgtaaacagt gacactgtgg     1380

gttggtcttg gccagacggt gctgagttgc catttaccat tgacaagtaa tttgttcaaa     1440

aaactccttg tttctact                                                   1458


