                         SEQUENCE LISTING

<110>  PANDIT, Sunil
       UZGIRIS, Arejas
       PALMER, Lance
 
<120>  REAGENTS AND METHODS FOR HIV CORECEPTOR TROPISM GENOTYPING

<130>  2012P08274WO

<150>  61/711785
<151>  2012-10-10

<160>  47    

<170>  PatentIn version 3.5

<210>  1
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  1
agagaaagag cagaagacag tggm                                              24


<210>  2
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  2
agagaaagag cagaagacag tggc                                              24


<210>  3
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  3
agagaaagag cagaagacag tgga                                              24


<210>  4
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  4
ccttgtaagt cattggtctt aaaggtacy                                         29


<210>  5
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  5
ccttgtaagt cattggtctt aaaggtacc                                         29


<210>  6
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  6
ccttgtaagt cattggtctt aaaggtact                                         29


<210>  7
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  7
gtacaatgta cacatggaat                                                   20


<210>  8
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  8
aaaattctcc tctacartta                                                   20


<210>  9
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  9
aaaattctcc tctacaatta                                                   20


<210>  10
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  10
aaaattctcc tctacagtta                                                   20


<210>  11
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  11
aaaattctcc tccacaatt                                                    19


<210>  12
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  12
cagcacagta cartgtacac a                                                 21


<210>  13
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  13
cttctccaat tgtcyytca                                                    19


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  14
ctgttaaatg gyagyctagc                                                   20


<210>  15
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  15
caatttctrg gtcycctc                                                     18


<210>  16
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  16
cagcacagta caatgtacac a                                                 21


<210>  17
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  17
cagcacagta cagtgtacac a                                                 21


<210>  18
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  18
cttctccaat tgtccctca                                                    19


<210>  19
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  19
cttctccaat tgtccttca                                                    19


<210>  20
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  20
cttctccaat tgtctctca                                                    19


<210>  21
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  21
cttctccaat tgtctttca                                                    19


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  22
ctgttaaatg gcagtctagc                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  23
ctgttaaatg gcagcctagc                                                   20


<210>  24
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  24
ctgttaaatg gtagtctagc                                                   20


<210>  25
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  25
ctgttaaatg gtagcctagc                                                   20


<210>  26
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  26
caatttctgg gtcccctc                                                     18


<210>  27
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  27
caatttctgg gtctcctc                                                     18


<210>  28
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  28
caatttctag gtcccctc                                                     18


<210>  29
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  29
caatttctag gtctcctc                                                     18


<210>  30
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  30
agagaaagag cagaagacag tgg                                               23


<210>  31
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  31
ccttgtaagt cattggtctt aaaggtac                                          28


<210>  32
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer for HIV

<400>  32
aaaattcccc tccacaatta                                                   20


<210>  33
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse Primer for HIV

<400>  33
aaaattcccc tccacaatt                                                    19


<210>  34
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward M13 Primer

<400>  34
ttctggcgta ccgttcctgt c                                                 21


<210>  35
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse M13 Primer

<400>  35
gttttcccag tcacgacgtt gta                                               23


<210>  36
<211>  3010
<212>  DNA
<213>  Human immunodeficiency virus

<400>  36
gtgtggtcca tagtaatcat agaatatagg aaaatattaa gacaaagaaa aatagacagg       60

ttaattgata gactaagaga aagagcagaa gacagtggca atgagagtga aggagaaata      120

tcagcacttg tggagatggg ggtggagatg gggcaccatg ctccttggga tgttgatgat      180

ctgtagtgct acagaaaaat tgtgggtcac agtctattat ggggtacctg tgtggaagga      240

agcaaccacc actctatttt gtgcatcaga tgctaaagca tatgatacag aggtacataa      300

tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag tagtattggt      360

aaatgtgaca gaaaatttta acatgtggaa aaatgacatg gtagaacaga tgcatgagga      420

tataatcagt ttatgggatc aaagcctaaa gccatgtgta aaattaaccc cactctgtgt      480

tagtttaaag tgcactgatt tgaagaatga tactaatacc aatagtagta gcgggagaat      540

gataatggag aaaggagaga taaaaaactg ctctttcaat atcagcacaa gcataagagg      600

taaggtgcag aaagaatatg cattttttta taaacttgat ataataccaa tagataatga      660

tactaccagc tataagttga caagttgtaa cacctcagtc attacacagg cctgtccaaa      720

ggtatccttt gagccaattc ccatacatta ttgtgccccg gctggttttg cgattctaaa      780

atgtaataat aagacgttca atggaacagg accatgtaca aatgtcagca cagtacaatg      840

tacacatgga attaggccag tagtatcaac tcaactgctg ttaaatggca gtctagcaga      900

agaagaggta gtaattagat ctgtcaattt cacggacaat gctaaaacca taatagtaca      960

gctgaacaca tctgtagaaa ttaattgtac aagacccaac aacaatacaa gaaaaagtat     1020

acatatagga ccagggagag cattttatgc aacaggagaa ataataggag atataagaca     1080

agcacattgt aacattagta gagcaaaatg gaataacact ttaaaacaga tagctagcaa     1140

attaagagaa caatttggaa ataataaaac aataatcttt aagcaatcct caggagggga     1200

cccagaaatt gtaacgcaca gttttaattg tggaggggaa tttttctact gtaattcaac     1260

acaactgttt aatagtactt ggtttaatag tacttggagt actgaagggt caaataacac     1320

tgaaggaagt gacacaatca ccctcccatg cagaataaaa caaattataa acatgtggca     1380

gaaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa     1440

tattacaggg ctgctattaa caagagatgg tggtaatagc aacaatgagt ccgagatctt     1500

cagacctgga ggaggagata tgagggacaa ttggagaagt gaattatata aatataaagt     1560

agtaaaaatt gaaccattag gagtagcacc caccaaggca aagagaagag tggtgcagag     1620

agaaaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag     1680

cactatgggc gcagcctcaa tgacgctgac ggtacaggcc agacaattat tgtctggtat     1740

agtgcagcag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact     1800

cacagtctgg ggcatcaagc agctccaggc aagaatcctg gctgtggaaa gatacctaaa     1860

ggatcaacag ctcctgggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt     1920

gccttggaat gctagttgga gtaataaatc tctggaacag atttggaatc acacgacctg     1980

gatggagtgg gacagagaaa ttaacaatta cacaagctta atacactcct taattgaaga     2040

atcgcaaaac cagcaagaaa agaatgaaca agaattattg gaattagata aatgggcaag     2100

tttgtggaat tggtttaaca taacaaattg gctgtggtat ataaaattat tcataatgat     2160

agtaggaggc ttggtaggtt taagaatagt ttttgctgta ctttctatag tgaatagagt     2220

taggcaggga tattcaccat tatcgtttca gacccacctc ccaaccccga ggggacccga     2280

caggcccgaa ggaatagaag aagaaggtgg agagagagac agagacagat ccattcgatt     2340

agtgaacgga tccttggcac ttatctggga cgatctgcgg agcctgtgcc tcttcagcta     2400

ccaccgcttg agagacttac tcttgattgt aacgaggatt gtggaacttc tgggacgcag     2460

ggggtgggaa gccctcaaat attggtggaa tctcctacag tattggagtc aggaactaaa     2520

gaatagtgct gttagcttgc tcaatgccac agccatagca gtagctgagg ggacagatag     2580

ggttatagaa gtagtacaag gagcttgtag agctattcgc cacataccta gaagaataag     2640

acagggcttg gaaaggattt tgctataaga tgggtggcaa gtggtcaaaa agtagtgtga     2700

ttggatggcc tactgtaagg gaaagaatga gacgagctga gccagcagca gatagggtgg     2760

gagcagcatc tcgagacctg gaaaaacatg gagcaatcac aagtagcaat acagcagcta     2820

ccaatgctgc ttgtgcctgg ctagaagcac aagaggagga ggaggtgggt tttccagtca     2880

cacctcaggt acctttaaga ccaatgactt acaaggcagc tgtagatctt agccactttt     2940

taaaagaaaa ggggggactg gaagggctaa ttcactccca aagaagacaa gatatccttg     3000

atctgtggat                                                            3010


<210>  37
<211>  3010
<212>  DNA
<213>  Human immunodeficiency virus

<400>  37
gtgtggtcca tagtaatcat agaatatagg aaaatattaa gacaaagaaa aatagacagg       60

ttaattgata gactaagaga aagagcagaa gacagtggca atgagagtga aggagaaata      120

tcagcacttg tggagatggg ggtggagatg gggcaccatg ctccttggga tgttgatgat      180

ctgtagtgct acagaaaaat tgtgggtcac agtctattat ggggtacctg tgtggaagga      240

agcaaccacc actctatttt gtgcatcaga tgctaaagca tatgatacag aggtacataa      300

tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag tagtattggt      360

aaatgtgaca gaaaatttta acatgtggaa aaatgacatg gtagaacaga tgcatgagga      420

tataatcagt ttatgggatc aaagcctaaa gccatgtgta aaattaaccc cactctgtgt      480

tagtttaaag tgcactgatt tgaagaatga tactaatacc aatagtagta gcgggagaat      540

gataatggag aaaggagaga taaaaaactg ctctttcaat atcagcacaa gcataagagg      600

taaggtgcag aaagaatatg cattttttta taaacttgat ataataccaa tagataatga      660

tactaccagc tataagttga caagttgtaa cacctcagtc attacacagg cctgtccaaa      720

ggtatccttt gagccaattc ccatacatta ttgtgccccg gctggttttg cgattctaaa      780

atgtaataat aagacgttca atggaacagg accatgtaca aatgtcagca cagtacaatg      840

tacacatgga attaggccag tagtatcaac tcaactgctg ttaaatggca gtctagcaga      900

agaagaggta gtaattagat ctgtcaattt cacggacaat gctaaaacca taatagtaca      960

gctgaacaca tctgtagaaa ttaattgtac aagacccaac aacaatacaa gaaaaagtat     1020

acgtatagga ccagggagag cattttatgc aacaggaaaa ataataggag atataagaca     1080

agcacattgt aacattagta gagcaaaatg gaataacact ttaaaacaga tagctagcaa     1140

attaagagaa caatttggaa ataataaaac aataatcttt aagcaatcct caggagggga     1200

cccagaaatt gtaacgcaca gttttaattg tggaggggaa tttttctact gtaattcaac     1260

acaactgttt aatagtactt ggtttaatag tacttggagt actgaagggt caaataacac     1320

tgaaggaagt gacacaatca ccctcccatg cagaataaaa caaattataa acatgtggca     1380

gaaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa     1440

tattacaggg ctgctattaa caagagatgg tggtaatagc aacaatgagt ccgagatctt     1500

cagacctgga ggaggagata tgagggacaa ttggagaagt gaattatata aatataaagt     1560

agtaaaaatt gaaccattag gagtagcacc caccaaggca aagagaagag tggtgcagag     1620

agaaaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag     1680

cactatgggc gcagcctcaa tgacgctgac ggtacaggcc agacaattat tgtctggtat     1740

agtgcagcag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact     1800

cacagtctgg ggcatcaagc agctccaggc aagaatcctg gctgtggaaa gatacctaaa     1860

ggatcaacag ctcctgggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt     1920

gccttggaat gctagttgga gtaataaatc tctggaacag atttggaatc acacgacctg     1980

gatggagtgg gacagagaaa ttaacaatta cacaagctta atacactcct taattgaaga     2040

atcgcaaaac cagcaagaaa agaatgaaca agaattattg gaattagata aatgggcaag     2100

tttgtggaat tggtttaaca taacaaattg gctgtggtat ataaaattat tcataatgat     2160

agtaggaggc ttggtaggtt taagaatagt ttttgctgta ctttctatag tgaatagagt     2220

taggcaggga tattcaccat tatcgtttca gacccacctc ccaaccccga ggggacccga     2280

caggcccgaa ggaatagaag aagaaggtgg agagagagac agagacagat ccattcgatt     2340

agtgaacgga tccttggcac ttatctggga cgatctgcgg agcctgtgcc tcttcagcta     2400

ccaccgcttg agagacttac tcttgattgt aacgaggatt gtggaacttc tgggacgcag     2460

ggggtgggaa gccctcaaat attggtggaa tctcctacag tattggagtc aggaactaaa     2520

gaatagtgct gttagcttgc tcaatgccac agccatagca gtagctgagg ggacagatag     2580

ggttatagaa gtagtacaag gagcttgtag agctattcgc cacataccta gaagaataag     2640

acagggcttg gaaaggattt tgctataaga tgggtggcaa gtggtcaaaa agtagtgtga     2700

ttggatggcc tactgtaagg gaaagaatga gacgagctga gccagcagca gatagggtgg     2760

gagcagcatc tcgagacctg gaaaaacatg gagcaatcac aagtagcaat acagcagcta     2820

ccaatgctgc ttgtgcctgg ctagaagcac aagaggagga ggaggtgggt tttccagtca     2880

cacctcaggt acctttaaga ccaatgactt acaaggcagc tgtagatctt agccactttt     2940

taaaagaaaa ggggggactg gaagggctaa ttcactccca aagaagacaa gatatccttg     3000

atctgtggat                                                            3010


<210>  38
<211>  3010
<212>  DNA
<213>  Human immunodeficiency virus

<400>  38
gtgtggtcca tagtaatcat agaatatagg aaaatattaa gacaaagaaa aatagacagg       60

ttaattgata gactaagaga aagagcagaa gacagtggca atgagagtga aggagaaata      120

tcagcacttg tggagatggg ggtggagatg gggcaccatg ctccttggga tgttgatgat      180

ctgtagtgct acagaaaaat tgtgggtcac agtctattat ggggtacctg tgtggaagga      240

agcaaccacc actctatttt gtgcatcaga tgctaaagca tatgatacag aggtacataa      300

tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag tagtattggt      360

aaatgtgaca gaaaatttta acatgtggaa aaatgacatg gtagaacaga tgcatgagga      420

tataatcagt ttatgggatc aaagcctaaa gccatgtgta aaattaaccc cactctgtgt      480

tagtttaaag tgcactgatt tgaagaatga tactaatacc aatagtagta gcgggagaat      540

gataatggag aaaggagaga taaaaaactg ctctttcaat atcagcacaa gcataagagg      600

taaggtgcag aaagaatatg cattttttta taaacttgat ataataccaa tagataatga      660

tactaccagc tataagttga caagttgtaa cacctcagtc attacacagg cctgtccaaa      720

ggtatccttt gagccaattc ccatacatta ttgtgccccg gctggttttg cgattctaaa      780

atgtaataat aagacgttca atggaacagg accatgtaca aatgtcagca cagtacaatg      840

tacacatgga attaggccag tagtatcaac tcaactgctg ttaaatggca gtctagcaga      900

agaagaggta gtaattagat ctgtcaattt cacggacaat gctaaaacca taatagtaca      960

gctgaacaca tctgtagaaa ttaattgtac aagacccagc aacaatacaa gaaaaagtat     1020

acatatagga ccagggagag cattttatac aacaggaaat ataataggag atataagaca     1080

agcacattgt aacattagta gagcaaaatg gaataacact ttaaaacaga tagctagcaa     1140

attaagagaa caatttggaa ataataaaac aataatcttt aagcaatcct caggagggga     1200

cccagaaatt gtaacgcaca gttttaattg tggaggggaa tttttctact gtaattcaac     1260

acaactgttt aatagtactt ggtttaatag tacttggagt actgaagggt caaataacac     1320

tgaaggaagt gacacaatca ccctcccatg cagaataaaa caaattataa acatgtggca     1380

gaaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa     1440

tattacaggg ctgctattaa caagagatgg tggtaatagc aacaatgagt ccgagatctt     1500

cagacctgga ggaggagata tgagggacaa ttggagaagt gaattatata aatataaagt     1560

agtaaaaatt gaaccattag gagtagcacc caccaaggca aagagaagag tggtgcagag     1620

agaaaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag     1680

cactatgggc gcagcctcaa tgacgctgac ggtacaggcc agacaattat tgtctggtat     1740

agtgcagcag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact     1800

cacagtctgg ggcatcaagc agctccaggc aagaatcctg gctgtggaaa gatacctaaa     1860

ggatcaacag ctcctgggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt     1920

gccttggaat gctagttgga gtaataaatc tctggaacag atttggaatc acacgacctg     1980

gatggagtgg gacagagaaa ttaacaatta cacaagctta atacactcct taattgaaga     2040

atcgcaaaac cagcaagaaa agaatgaaca agaattattg gaattagata aatgggcaag     2100

tttgtggaat tggtttaaca taacaaattg gctgtggtat ataaaattat tcataatgat     2160

agtaggaggc ttggtaggtt taagaatagt ttttgctgta ctttctatag tgaatagagt     2220

taggcaggga tattcaccat tatcgtttca gacccacctc ccaaccccga ggggacccga     2280

caggcccgaa ggaatagaag aagaaggtgg agagagagac agagacagat ccattcgatt     2340

agtgaacgga tccttggcac ttatctggga cgatctgcgg agcctgtgcc tcttcagcta     2400

ccaccgcttg agagacttac tcttgattgt aacgaggatt gtggaacttc tgggacgcag     2460

ggggtgggaa gccctcaaat attggtggaa tctcctacag tattggagtc aggaactaaa     2520

gaatagtgct gttagcttgc tcaatgccac agccatagca gtagctgagg ggacagatag     2580

ggttatagaa gtagtacaag gagcttgtag agctattcgc cacataccta gaagaataag     2640

acagggcttg gaaaggattt tgctataaga tgggtggcaa gtggtcaaaa agtagtgtga     2700

ttggatggcc tactgtaagg gaaagaatga gacgagctga gccagcagca gatagggtgg     2760

gagcagcatc tcgagacctg gaaaaacatg gagcaatcac aagtagcaat acagcagcta     2820

ccaatgctgc ttgtgcctgg ctagaagcac aagaggagga ggaggtgggt tttccagtca     2880

cacctcaggt acctttaaga ccaatgactt acaaggcagc tgtagatctt agccactttt     2940

taaaagaaaa ggggggactg gaagggctaa ttcactccca aagaagacaa gatatccttg     3000

atctgtggat                                                            3010


<210>  39
<211>  3010
<212>  DNA
<213>  Human immunodeficiency virus

<400>  39
gtgtggtcca tagtaatcat agaatatagg aaaatattaa gacaaagaaa aatagacagg       60

ttaattgata gactaagaga aagagcagaa gacagtggca atgagagtga aggagaaata      120

tcagcacttg tggagatggg ggtggagatg gggcaccatg ctccttggga tgttgatgat      180

ctgtagtgct acagaaaaat tgtgggtcac agtctattat ggggtacctg tgtggaagga      240

agcaaccacc actctatttt gtgcatcaga tgctaaagca tatgatacag aggtacataa      300

tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag tagtattggt      360

aaatgtgaca gaaaatttta acatgtggaa aaatgacatg gtagaacaga tgcatgagga      420

tataatcagt ttatgggatc aaagcctaaa gccatgtgta aaattaaccc cactctgtgt      480

tagtttaaag tgcactgatt tgaagaatga tactaatacc aatagtagta gcgggagaat      540

gataatggag aaaggagaga taaaaaactg ctctttcaat atcagcacaa gcataagagg      600

taaggtgcag aaagaatatg cattttttta taaacttgat ataataccaa tagataatga      660

tactaccagc tataagttga caagttgtaa cacctcagtc attacacagg cctgtccaaa      720

ggtatccttt gagccaattc ccatacatta ttgtgccccg gctggttttg cgattctaaa      780

atgtaataat aagacgttca atggaacagg accatgtaca aatgtcagca cagtacaatg      840

tacacatgga attaggccag tagtatcaac tcaactgctg ttaaatggca gtctagcaga      900

agaagaggta gtaattagat ctgtcaattt cacggacaat gctaaaacca taatagtaca      960

gctgaacaca tctgtagaaa ttaattgcat aagacccaac aacaatacaa gaaaaagtat     1020

acatatagga ccagggagag caatttatgc aacaggaggc ataataggag atataagacg     1080

agcatattgt aacattagta gagcaaaatg gaataacact ttaaaacaga tagctagcaa     1140

attaagagaa caatttggaa ataataaaac aataatcttt aagcaatcct caggagggga     1200

cccagaaatt gtaacgcaca gttttaattg tggaggggaa tttttctact gtaattcaac     1260

acaactgttt aatagtactt ggtttaatag tacttggagt actgaagggt caaataacac     1320

tgaaggaagt gacacaatca ccctcccatg cagaataaaa caaattataa acatgtggca     1380

gaaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa     1440

tattacaggg ctgctattaa caagagatgg tggtaatagc aacaatgagt ccgagatctt     1500

cagacctgga ggaggagata tgagggacaa ttggagaagt gaattatata aatataaagt     1560

agtaaaaatt gaaccattag gagtagcacc caccaaggca aagagaagag tggtgcagag     1620

agaaaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag     1680

cactatgggc gcagcctcaa tgacgctgac ggtacaggcc agacaattat tgtctggtat     1740

agtgcagcag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact     1800

cacagtctgg ggcatcaagc agctccaggc aagaatcctg gctgtggaaa gatacctaaa     1860

ggatcaacag ctcctgggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt     1920

gccttggaat gctagttgga gtaataaatc tctggaacag atttggaatc acacgacctg     1980

gatggagtgg gacagagaaa ttaacaatta cacaagctta atacactcct taattgaaga     2040

atcgcaaaac cagcaagaaa agaatgaaca agaattattg gaattagata aatgggcaag     2100

tttgtggaat tggtttaaca taacaaattg gctgtggtat ataaaattat tcataatgat     2160

agtaggaggc ttggtaggtt taagaatagt ttttgctgta ctttctatag tgaatagagt     2220

taggcaggga tattcaccat tatcgtttca gacccacctc ccaaccccga ggggacccga     2280

caggcccgaa ggaatagaag aagaaggtgg agagagagac agagacagat ccattcgatt     2340

agtgaacgga tccttggcac ttatctggga cgatctgcgg agcctgtgcc tcttcagcta     2400

ccaccgcttg agagacttac tcttgattgt aacgaggatt gtggaacttc tgggacgcag     2460

ggggtgggaa gccctcaaat attggtggaa tctcctacag tattggagtc aggaactaaa     2520

gaatagtgct gttagcttgc tcaatgccac agccatagca gtagctgagg ggacagatag     2580

ggttatagaa gtagtacaag gagcttgtag agctattcgc cacataccta gaagaataag     2640

acagggcttg gaaaggattt tgctataaga tgggtggcaa gtggtcaaaa agtagtgtga     2700

ttggatggcc tactgtaagg gaaagaatga gacgagctga gccagcagca gatagggtgg     2760

gagcagcatc tcgagacctg gaaaaacatg gagcaatcac aagtagcaat acagcagcta     2820

ccaatgctgc ttgtgcctgg ctagaagcac aagaggagga ggaggtgggt tttccagtca     2880

cacctcaggt acctttaaga ccaatgactt acaaggcagc tgtagatctt agccactttt     2940

taaaagaaaa ggggggactg gaagggctaa ttcactccca aagaagacaa gatatccttg     3000

atctgtggat                                                            3010


<210>  40
<211>  922
<212>  DNA
<213>  Human immunodeficiency virus

<400>  40
attacacagg cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtgccccg       60

gctggttttg cgattctaaa atgtaataat aagacgttca atggaacagg accatgtaca      120

aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac tcaactgctg      180

ttaaatggca gtctagcaga agaagaggta gtaattagat ctgtcaattt cacggacaat      240

gctaaaacca taatagtaca gctgaacaca tctgtagaaa ttaattgtac aagacccaac      300

aacaatacaa gaaaaagtat acatatagga ccagggagag cattttatgc aacaggagaa      360

ataataggag atataagaca agcacattgt aacattagta gagcaaaatg gaataacact      420

ttaaaacaga tagctagcaa attaagagaa caatttggaa ataataaaac aataatcttt      480

aagcaatcct caggagggga cccagaaatt gtaacgcaca gttttaattg tggaggggaa      540

tttttctact gtaattcaac acaactgttt aatagtactt ggtttaatag tacttggagt      600

actgaagggt caaataacac tgaaggaagt gacacaatca ccctcccatg cagaataaaa      660

caaattataa acatgtggca gaaagtagga aaagcaatgt atgcccctcc catcagtgga      720

caaattagat gttcatcaaa tattacaggg ctgctattaa caagagatgg tggtaatagc      780

aacaatgagt ccgagatctt cagacctgga ggaggagata tgagggacaa ttggagaagt      840

gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc caccaaggca      900

aagagaagag tggtgcagag ag                                               922


<210>  41
<211>  922
<212>  DNA
<213>  Human immunodeficiency virus

<400>  41
attacacagg cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtgccccg       60

gctggttttg cgattctaaa atgtaataat aagacgttca atggaacagg accatgtaca      120

aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac tcaactgctg      180

ttaaatggca gtctagcaga agaagaggta gtaattagat ctgtcaattt cacggacaat      240

gctaaaacca taatagtaca gctgaacaca tctgtagaaa ttaattgtac aagacccaac      300

aacaatacaa gaaaaagtat acgtatagga ccagggagag cattttatgc aacaggaaaa      360

ataataggag atataagaca agcacattgt aacattagta gagcaaaatg gaataacact      420

ttaaaacaga tagctagcaa attaagagaa caatttggaa ataataaaac aataatcttt      480

aagcaatcct caggagggga cccagaaatt gtaacgcaca gttttaattg tggaggggaa      540

tttttctact gtaattcaac acaactgttt aatagtactt ggtttaatag tacttggagt      600

actgaagggt caaataacac tgaaggaagt gacacaatca ccctcccatg cagaataaaa      660

caaattataa acatgtggca gaaagtagga aaagcaatgt atgcccctcc catcagtgga      720

caaattagat gttcatcaaa tattacaggg ctgctattaa caagagatgg tggtaatagc      780

aacaatgagt ccgagatctt cagacctgga ggaggagata tgagggacaa ttggagaagt      840

gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc caccaaggca      900

aagagaagag tggtgcagag ag                                               922


<210>  42
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  42
tgtacaagac ccaacaacaa tacaagaaaa agtatacata taggaccagg gagagcattt       60

tatgcaacag gagaaataat aggagatata agacaagcac attgt                      105


<210>  43
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  43
tgtacaagac ccaacaacaa tacaagaaaa agtatacgta taggaccagg gagagcattt       60

tatgcaacag gaaaaataat aggagatata agacaagcac attgt                      105


<210>  44
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  44
tgtacaagac ccagcaacaa tacaagaaaa agtatacata taggaccagg gagagcattt       60

tatacaacag gaaatataat aggagatata agacaagcac attgt                      105


<210>  45
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  45
tgcataagac ccaacaacaa tacaagaaaa agtatacata taggaccagg gagagcaatt       60

tatgcaacag gaggcataat aggagatata agacgagcat attgt                      105


<210>  46
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  46
tgtacaagac ccaacaacaa tacaagaaaa agtatacata taggaccagg gagagcattt       60

tatgcaacag gagaaataat aggagatata agacaagcac attgt                      105


<210>  47
<211>  105
<212>  DNA
<213>  Human immunodeficiency virus

<400>  47
tgtacaagac ccaacaacaa tacaagaaaa agtatacgta taggaccagg gagagcattt       60

tatgcaacag gaaaaataat aggagatata agacaagcac attgt                      105


