                         SEQUENCE LISTING

<110>  The Government of the United States of America, as 
       Represented by the Secretary of the Department of Health and 
       Human Services
       Major, Eugene
       Ryschkewitsch, Caroline
 
<120>  METHODS AND COMPOSITIONS FOR IDENTIFYING JC VIRUS

<130>  4239-88708-02


<150>  US 61/661,289
<151>  2012-06-18

<160>  2     

<170>  PatentIn version 3.5

<210>  1
<211>  5120
<212>  DNA
<213>  JC Polyomavirus

<400>  1
gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctaaaactgg       60

atggctgcca gccaagcatg agctcatacc tagggagcca accagctgac agccagaggg      120

agccctggct gcatgccact ggcagttata gtgaaacccc tcccatagtc cttaatcaca      180

agtaaacaaa gcacaagggg aagtggaaag cagccagggg aacatgtttt gcgagccaga      240

gctgttttgg cttgtcacca gctggccatg gttcttcgcc agctgtcacg taaggcttct      300

gtgaaagtta gtaaaacctg gagtggaact aaaaaaagag ctcaaaggat tttaattttt      360

ttgttagaat ttttgctgga cttttgcaca ggtgaagaca gtgtagacgg gaaaaaaaga      420

cagaaacaca gtggtttgac tgagcagaga tacagtgctt tgcctgaacc aaaagctaca      480

taggtaagta atgttttttt ttgtgttttc aggttcatgg gtgccgcact tgcacttttg      540

ggggacctag ttgctactgt ttctgaggct gctgctgcca caggattttc agtagctgaa      600

attgctgctg gagaggctgc tgctactata gaagttgaaa ttgcatccct tgctactgta      660

gaggggatta caagtacctc tgaggctata gctgctatag gccttactcc tgaaacatat      720

gctgtaatta ctggagctcc gggggctgta gctgggtttg ctgcattggt tcaaactgta      780

actggtggta gtgctattgc tcagttggga tatagatttt ttgctgactg ggatcataaa      840

gtttcaacag ttgggctttt tcagcagcca gctatggctt tacagttatt taatccagaa      900

gactactatg atattttatt tcctggagtg aatgcctttg ttaacaatat tcactattta      960

gatcctagac attggggccc ttctttgttc tccacaatct cccaggcttt ttggaacctt     1020

gttagagatg atttgccatc tttaacatct caggaaattc aaagaagaac ccaaaaacta     1080

tttgttgaaa gtttagcaag gtttttggaa gaaactactt gggcaatagt taattcacca     1140

gttaacttat ataattatat ttcagactat tattctagat tgtctccagt aaggccctct     1200

atggtaaggc aggttgccca aagggaggga acctatattt cctttggcca ctcatacacc     1260

caaagtatag atgatgcaga cagcattcaa gaagttaccc aaaggctaga tttaaaaacc     1320

ccaaatgtgc aatctggtga gtttatagag aaaagtattg caccaggagg tgcaaatcaa     1380

agatctgctc ctcaatggat gttgccttta cttttagggt tgtacgggac tgtaacacct     1440

gctcttgaag catatgaaga tggccccaac aaaaagaaaa ggagaaagga aggaccccgt     1500

gcaagttcca aaacttctta taagaggagg agtagaagtt ctagaagtta aaactggggt     1560

tgactcaatt acagaggtag aatgtttttt aactccagaa atgggtgacc cagatgagca     1620

tcttaggggt tttagtaagt caatttctat atcagataca tttgaaagtg actccccaaa     1680

taaggacatg cttccttgtt acagtgtggc cagaattcca ctacccaatc taaatgagga     1740

tctaacctgt ggaaatatac taatgtggga ggctgtgacc ttaaaaactg aggttatagg     1800

ggtaacaact ttgatgaatg tgcactctaa tggtcaagca actcatgaca atggtgcagg     1860

aaagccagtg cagggcacca gctttcattt tttttctgtt gggggggagg ctttagaatt     1920

acagggggtg gtttttaact acagaacaaa gtacccagat ggaacaattt ttccaaagaa     1980

tgcaacagtg caatctcaag taatgaacac agagcacaag gcgtacctag ataagaacaa     2040

agcatatcct gttgaatgtt gggttcctga tcccaccaga aatgaaaaca caagatattt     2100

tgggacacta acaggaggag aaaatgttcc tccagttctt catataacaa acactgccac     2160

aacagtgctg cttgatgaat ttggtgttgg gccactttgc aaaggtgaca acttgtattt     2220

gtcagctgtg gatgtttgtg gcatgtttac taacagatct ggttcccagc agtggagagg     2280

actgtccaga tattttaagg ttcagctaag aaaaaggagg gttaaaaacc cctacccaat     2340

ttctttcctt cttactgatt taattaacag aaggacccct agagttgatg ggcagcctat     2400

gtatggcatg gatgctcagg tagaggaggt tagagttttt gagggaacag aggaacttcc     2460

aggggaccca gacatgatga gatatgttga cagatatgga cagttgcaga caaagatgct     2520

gtaatcaaaa gcctttattg taatatgcag tacattttaa taaagtataa ccagctttac     2580

tttgcagttg cagttacttt gggggagggg tttttggttt tttgaaacat tgaaagcctt     2640

tacagatgtg ataggtgcag tgttcctgtg tgtctgcacc agaggcttct gagacctggg     2700

aagagcattg tgattgagat tcagtgcttg atccatgtcc agagtcttct gcttcagaat     2760

cttcctctct aggaaagtca agaatgggtc tccccatacc aacattagct ttcatagtag     2820

aaaatgtata catgcttatt tctaaatcca gcctttcttt ccactgcaca atcctctcat     2880

gaatggcagc tgcaaagtca gcaactggcc taaaccagat taaaagcaaa agcaaagtca     2940

tgccactttg caaaatcctt ttttctagta aatattcaga gcagcttagt gattttctta     3000

ggtaggcctt aggtctaaaa tctatttgcc ttacaaatct ggcttgtaaa gttctaggca     3060

ctgaatattc attcatggtt acaattccag gtggaaacac ctgtgttctt ttgttttggt     3120

gttttctctc taaattaact ttcacacttc catctaagta atctcttagg caatcaaggt     3180

tgcttatgcc atgccctgaa ggtaaatccc ttgactctgc accagtgcct tttacatcct     3240

caaatacaac cataaactga tctataccca ctcctaactc aaagtttaat ctttctaatg     3300

gcatattaac atttaatgac tttcccccac agagatcaag taaagctgca gctaaagtag     3360

ttttgccact gtctattggc cccttgaata gccagtacct tttttttgga atgtttaata     3420

caatgcattt taagaactca taaatgactg tgtccatttg aggcagcaaa caatgaatcc     3480

aggccacccc agccatatat tgctctaaaa cagcattgcc atgtgcccca aaaattaagt     3540

ccattttatc aagcaaaaaa ttaaaccttt caactaacat ttcttctctg gtcatatgga     3600

gactgtcaac cctttgtttg gctgctacag tatcaacagc ctgctggcaa atgctttttt     3660

gatttttgct atctgcaaaa atttgggcat tataatagtg cttttcatga tggttaaagt     3720

gatttggctg atccttcttt tcacattttt tgcattgcag tgggttttcc tgaaagttta     3780

agtacatgcc cataagcaag aaaacatcct cacacttggt gtccaaagca tactgtgtaa     3840

ctaatttcca tgaaacctgc ttagtttctt ctggttcttc tgggttaaag tcatgctcct     3900

taaggccccc ctgaatactt tcttccacta ctgcatatgg ctgtctacac aaggcactgt     3960

aaaacaagta ttccttattc acacctttac aaattaaaaa actaaaggta catagtttct     4020

gacagtaatt attaattgct gaaactctat gtctatgtgg tgttaaaaaa aacaaaatat     4080

tatgaccccc aaaaccatgt ctacttataa aggttacaga atatttttcc ataagtttct     4140

tatataaaat ttgagctttt tctttagtgg tatacacagc aaaagaagca acagttctat     4200

tactaaacac agcttgactg aggaatgcat gcagatctac aggaaagtct ttagggtctt     4260

ctaccttttt tttcttctta ggtggggtag agtgttggga tcctgtgttt tcatcatcac     4320

tggcaaacat ttcttcatgg caaaacaggt cttcatccca cttctcatta aatgtattcc     4380

accaggattc ccactcatct gttccatagg ttggcaccta aaaacaaaaa attcagttta     4440

tgtaaaaaac aaaatgccct gcaaaagaaa aattgtggtt taccttaaag ctttagatcc     4500

ctgtaggggg tgtctccaag aaccttctcc cagcaatgaa gagcttcttg ggttaagtca     4560

cacccaaacc attgtctgaa gcaatcaaag caatagcaat ctatccacac aagtgggctg     4620

cttcttaaaa attttctgtt tctatgcctt aattttagca tgcacattaa acaggggcaa     4680

tgcactgaag gattagtggc acaattaggc cattccttgc aataaagagt atcagaatta     4740

ggaggaaaat cacaaccaac ctctgaacta ttccatgtac caaaatcagg ctgatgagca     4800

acttttacac cttgttccat ttttttatat aaaaagttca ttctcttcat tttgtcttcg     4860

tccccacctt tatcagggtg aagttctttg cattttttca gataagcttt tctcatgaca     4920

ggaatgtttc cccatgcaga tctatcaagg cctaataaat ccatgagctc catggattcc     4980

tccctattca gcactttgtc catttttgct ttttgtagca aaaaattagt gcaaaaaagg     5040

gaaaaacaag ggaatttccc tggcctccta aaaagcctcc acgcccttac tacttctgag     5100

taagcttgga ggcggaggcg                                                 5120


<210>  2
<211>  5130
<212>  DNA
<213>  JC Polyomavirus

<400>  2
gcctcggcct cctgtatata taaaaaaaag ggaagggatg gctgccagcc aagcatgagc       60

tcatacctag ggagccaacc agctaacagc cagtaaacaa agcacaaggc tgtatatata      120

aaaaaaaggg aagggatggc tgccagccaa gcatgagctc atacctaggg agccaaccag      180

ctaacagcca gtaaacaaag cacaagggga agtggaaagc agccaaggga acatgttttg      240

cgagccagag ctgttttggc ttgtcaccag ctggccatgg ttcttcgcca gctgtcacgt      300

aaggcttctg tgaaagttag taaaacctgg agtggaacta aaaaaagagc tcaaaggatt      360

ttaatttttt tgttagaatt tttgctggac ttttgcacag gtgaagacag tgtagacggg      420

aaaaaaagac agagacacag tggtttgact gagcagacat acagtgcttt gcctgaacca      480

aaagctacat aggtaagtaa tgtttttttt tgtgttttca ggttcatggg tgccgcactt      540

gcacttttgg gggacctagt tgctactgtt tctgaggctg ctgctgccac aggattttca      600

gtagctgaaa ttgctgctgg agaggctgct gctactatag aagttgaaat tgcatccctt      660

gctactgtag aggggattac aagtacctct gaggctatag ctgctatagg ccttactcct      720

gaaacatatg ctgtaataac tggagctccg ggggctgtag ctgggtttgc tgcattggtt      780

caaactgtaa ctggtggtag tgctattgct cagttgggat atagattttt tgctgactgg      840

gatcataaag tttcaacagt tgggcttttt cagcagccag ctatggcttt acaattattt      900

aatccagaag actactatga tattttattt cctggagtga atgcctttgt taacaatatt      960

cactatttag atcctagaca ttggggcccg tccttgttct ccacaatctc ccaggctttt     1020

tggaatcttg ttagagatga tttgccagcc ttaacctctc aggaaattca gagaagaacc     1080

caaaaactat ttgttgaaag tttagcaagg tttttggaag aaactacttg ggcaatagtt     1140

aattcaccag ctaacttata taattatatt tcagactatt attctagatt gtctccagtt     1200

aggccctcta tggtaaggca agttgcccaa agggagggaa cctatatttc ttttggccac     1260

tcatacaccc aaagtataga tgatgcagac agcattcaag aagttaccca aaggctagat     1320

ttaaaaaccc caaatgtgca atctggtgaa tttatagaaa gaagtattgc accaggaggt     1380

gcaaatcaaa gatctgctcc tcaatggatg ttgcctttac ttttagggtt gtacgggact     1440

gtaacacctg ctcttgaagc atatgaagat ggccccaaca aaaagaaaag gagaaaggaa     1500

ggaccccgtg caagttccaa aacttcttat aagaggagga gtagaagttc tagaagttaa     1560

aactggggtt gactcaatta cagaggtaga atgcttttta actccagaaa tgggtgaccc     1620

agatgagcat cttaggggtt ttagtaagtc aatatctata tcagatacat ttgaaagtga     1680

ctccccaaat agggacatgc ttccttgtta cagtgtggcc agaattccac tacccaatct     1740

aaatgaggat ctaacctgtg gaaatatact catgtgggag gctgtgacct taaaaactga     1800

ggttataggg gtgacaagtt tgatgaatgt gcactctaat gggcaagcaa ctcatgacaa     1860

tggtgcaggg aagccagtgc agggcaccag ctttcatttt ttttctgttg ggggggaggc     1920

tttagaatta cagggggtgc tttttaatta cagaacaaag tacccagatg gaacaatttt     1980

tccaaagaat gccacagtgc aatctcaagt catgaacaca gagcacaagg cgtacctaga     2040

taagaacaaa gcatatcctg ttgaatgttg ggttcctgat cccaccagaa atgaaaacac     2100

aagatatttt gggacactaa caggaggaga aaatgttcct ccagttcttc atataacaaa     2160

cactgccaca acagtgttgc ttgatgaatt tggtgttggg ccactttgca aaggtgacaa     2220

cttatacttg tcagctgttg atgtctgtgg catgtttaca aacaggtctg gttcccagca     2280

gtggagagga ctctccagat attttaaggt gcagctaagg aaaaggaggg ttaaaaaccc     2340

ctacccaatt tctttccttc ttactgattt aattaacaga aggactccta gagttgatgg     2400

gcagcctatg tatggcatgg atgctcaagt agaggaggtt agagtttttg agggaacaga     2460

ggagcttcca ggggacccag acatgatgag atacgttgac aaatatggac agttgcagac     2520

aaaaatgctg taatcaaaag cctttattgt aatatgcagt acattttaat aaagtataac     2580

cagctttact taacagttgc agttattttg ggggaggggt ctttggtttt ttgaaacatt     2640

gaaagccttt acagatgtga aaagtgcagt tttcctgtgt gtctgcacca gaggcttctg     2700

agacctggga aaagcattgt gattgtgatt cagtgcttga tccatgtcca gagtcttctg     2760

cttcagaatc ttcctctcta ggaaagtcaa gaatgggtct ccccatacca acattagctt     2820

tcatagtaga aaatgtatac atgcttattt ctaaatccag cctttctttc cactgcacaa     2880

tcctctcatg aatggcagct gcaaagtcag caactggcct aaaccagatt aaaagcaaaa     2940

gcaaagtcat accactttgc aaaatccttt tttctagcaa atactcagag cagcttagtg     3000

attttctcag gtaggccttt ggtctaaaat ctatctgcct tacaaatctg gcctgtaaag     3060

ttctaggcac tgaatattca ttcatggtta caattccagg tggaaacacc tgtgttcttt     3120

tgttttggtg ttttctctct aaattaactt ttacacttcc atctaagtaa tctcttaagc     3180

aatcaaggtt gcttatgcca tgccctgaag gtaaatccct tgactctgca ccagtgcctt     3240

ttacatcctc aaatacaacc ataaactgat ctatacccac tcctaattca aagtttaatc     3300

tttctaatgg catattaaca tttaatgact ttcccccaca gagatcaagt aaagctgcag     3360

ctaaagtagt tttgccactg tctattggcc ccttgaatag ccagtacctt ttttttggaa     3420

tgtttaatac aatgcatttt agaaagtcat aaataacagt gtccatttga ggcagcaagc     3480

aatgaatcca ggccacccca gccatatatt gctctaaaac agcattgcca tgtgccccaa     3540

aaattaagtc cattttatca agcaagaaat taaacctttc aactaacatt tcttctctgg     3600

tcatgtggat gctgtcaacc ctttgtttgg ctgctacagt atcaacagcc tgctggcaaa     3660

tgcttttttg atttttgcta tctgcaaaaa tttgggcatt ataatagtgt ttttcatgat     3720

ggttaaagtg atttggctga tccttttttt cacatttttt gcattgctgt gggttttcct     3780

gaaagtctaa gtacatgccc ataagcaaaa aaacatcctc acacttggtt tccaaggcat     3840

actgtgtaac taatttccat gaaacctgct tagtttcttc tggttcttct gggttaaagt     3900

catgctcctt aaggcccccc tgaatacttt cttccactac tgcatatggc tgtctacaca     3960

gggcactata aaacaagtat tccttattca cacctttaca aattaaaaaa ctaaaggtac     4020

atagtttttg acagtagtta ttaattgctg acactctatg tctatgtggt gttaagaaaa     4080

acaaaatatt atgaccccca aaaccatgtc tacttataaa agttacagaa tatttttcca     4140

taagtttctt atataaaatt tgagcttttt ctttagtggt atacacagca aaagaagcaa     4200

cagttctatt actaaacaca gcttgactga ggaatgcatg cagatctaca ggaaagtctt     4260

tagggtcttc tacctttttt ttctttttag gtggggtaga gtgttgggat cctgtgtttt     4320

catcatcact ggcaaacatt tcttcatggc aaaacaggtc ttcatcccac ttctcattaa     4380

atgtattcca ccaggattcc cattcatctg ttccataggt tggcacctaa aaaaaaacaa     4440

ttaagtttat tgtaaaaaac aaaatgccct gcaaaagaaa aatagtggtt taccttaaag     4500

ctttagatcc ctgtaggggg tgtctccaag aactttctcc cagcaatgaa gagcttcttg     4560

ggttaagtca cacccaaacc attgtctgaa gcaatcaaag caatagcaat ctatccacac     4620

aagtgggctg cttcttaaaa attttctgtt tctatgcctt aattttagca tgcacattaa     4680

acaggggcaa tgcactgaag gattagtggc acagttaggc cattccttgc aataaagggt     4740

atcagaatta ggaggaaaat cacaaccaac ctctgaacta ttccatgtac caaaatcagg     4800

ctgatgagca acttttacac cttgttccat ttttttatat aaaaaattca ttctcttcat     4860

cttgtcttcg tccccacctt tatcagggtg gagttctttg cattttttca gataagcttt     4920

tctcatgaca ggaatgttcc cccatgcaga cctatcaagg cctaataaat ccataagctc     4980

catggattcc tccctattca gcactttgtc cattttagct ttttgcagca aaaaattact     5040

gcaaaaaagg gaaaaacaag ggaatttccc tggcctccta aaaagcctcc acgcccttac     5100

tacttctgag taagcttgga ggcggaggcg                                      5130


