                               SEQUENCE LISTING

<110> HUANG, SHIHAI X.
      SU, HONG X.
      ERICKSON, BRIAN J.
 
<120> METHOD OF DESIGNING PRIMERS, METHOD OF DETECTING SINGLE 
      NUCLEOTIDE POLYMORPHISMS (SNPS), METHOD OF DISTINGUISHING SNPS, 
      AND RELATED PRIMERS, DETECTABLE OLIGONUCLEOTIDES, AND KITS

<130> 01886-2005US02

<140> 13/840,142
<141> 2013-03-15

<150> 61/652,827
<151> 2012-05-29

<160> 61    

<170> PatentIn version 3.5

<210> 1
<211> 41
<212> DNA
<213> Homo sapiens

<400> 1
aaataggtga ttttggtcta gctacagtga aatctcgatg g                           41


<210> 2
<211> 41
<212> DNA
<213> Homo sapiens

<400> 2
aaataggtga ttttggtcta gctacagaga aatctcgatg g                           41


<210> 3
<211> 41
<212> DNA
<213> Homo sapiens

<400> 3
aaataggtga ttttggtcta gctacagaaa aatctcgatg g                           41


<210> 4
<211> 41
<212> DNA
<213> Homo sapiens

<400> 4
aaataggtga ttttggtcta gctacaaaga aatctcgatg g                           41


<210> 5
<211> 41
<212> DNA
<213> Homo sapiens

<400> 5
aaataggtga ttttggtcta gctacaaaaa aatctcgatg g                           41


<210> 6
<211> 41
<212> DNA
<213> Homo sapiens

<400> 6
aaataggtga ttttggtcta gctacagata aatctcgatg g                           41


<210> 7
<211> 41
<212> DNA
<213> Homo sapiens

<400> 7
aaataggtga ttttggtcta gctacagaca aatctcgatg g                           41


<210> 8
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 8
aataggtgat tttggtctag ctaccgag                                          28


<210> 9
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 9
aataggtgat tttggtctag ctaccgaa                                          28


<210> 10
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 10
taatcagtgg aaaaatagcc tcaattc                                           27


<210> 11
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<223> 5'-FAM

<220>
<221> modified_base
<222> (1)..(1)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (6)..(6)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (10)..(10)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (11)..(13)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (15)..(15)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (16)..(16)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (19)..(20)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (21)..(21)
<223> BHQ1-dT

<400> 11
uggagugggu cccaucaguu t                                                 21


<210> 12
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 12
gctacagtga aatctcg                                                      17


<210> 13
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 13
gctacaaaga aatctcg                                                      17


<210> 14
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 14
gtatcaccat ctccatatca ttgagacc                                          28


<210> 15
<211> 29
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 15
acaagacatt taacgaatgg aacttactc                                         29


<210> 16
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<223> 5'-Quasar

<220>
<221> modified_base
<222> (2)..(2)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (4)..(4)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (7)..(7)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (11)..(11)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (12)..(12)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (14)..(14)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (16)..(16)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (20)..(20)
<223> BHQ2-dT

<400> 16
gcacgacaga cugcacaggt                                                   20


<210> 17
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 17
aataggtgat tttggtctag ctactaag                                          28


<210> 18
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 18
aataggtgat tttggtctag ctactaaa                                          28


<210> 19
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 19
gctacagaga aatctcg                                                      17


<210> 20
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 20
aataggtgat tttggtctag ctactgat                                          28


<210> 21
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 21
aataggtgat tttggtctag ctactgac                                          28


<210> 22
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 22
aataggtgat tttggtctag ctacaaa                                           27


<210> 23
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 23
aataggtgat tttggtctag ctaccga                                           27


<210> 24
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 24
aataggtgat tttggtctag ctacgga                                           27


<210> 25
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 25
aataggtgat tttggtctag ctactgag                                          28


<210> 26
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 26
aataggtgat tttggtctag ctacggag                                          28


<210> 27
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 27
aataggtgat tttggtctag ctactgaa                                          28


<210> 28
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 28
aataggtgat tttggtctag ctacggaa                                          28


<210> 29
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 29
aataggtgat tttggtctag ctaccaag                                          28


<210> 30
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 30
aataggtgat tttggtctag ctacgaag                                          28


<210> 31
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 31
aataggtgat tttggtctag ctaccaaa                                          28


<210> 32
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 32
aataggtgat tttggtctag ctacgaaa                                          28


<210> 33
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 33
aataggtgat tttggtctag ctacaaac                                          28


<210> 34
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 34
aataggtgat tttggtctag ctacaaat                                          28


<210> 35
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 35
aataggtgat tttggtctag ctacaac                                           27


<210> 36
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 36
aataggtgat tttggtctag ctacgaa                                           27


<210> 37
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 37
aataggtgat tttggtctag ctaccaa                                           27


<210> 38
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 38
gatctcagta aggtacggag taactgtc                                          28


<210> 39
<211> 29
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 39
tagtctgttc ttttggatag catgaagct                                         29


<210> 40
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<223> 5'-Quasar

<220>
<221> modified_base
<222> (3)..(3)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (10)..(11)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (13)..(13)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (14)..(14)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (15)..(15)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (16)..(18)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (19)..(20)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (21)..(21)
<223> BHQ2-dT

<400> 40
gaugagagac cacucuuucc t                                                 21


<210> 41
<211> 32
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 41
ctaaataagt ctttacaccc ccaagtatgt tc                                     32


<210> 42
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 42
ctgtggatga ttgacttggc gtgtaag                                           27


<210> 43
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide 


<220>
<223> 5'-Quasar

<220>
<221> modified_base
<222> (4)..(6)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (7)..(7)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (12)..(13)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (18)..(18)
<223> 5-Propynyl dU 

<220>
<221> modified_base
<222> (19)..(20)
<223> 5-Propynyl dC 

<220>
<221> modified_base
<222> (21)..(21)
<223> BHQ2-dT

<400> 43
agauuucgag gccagagucc t                                                 21


<210> 44
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 44
cacaaaatgg atccagacaa ctgttc                                            26


<210> 45
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 45
tccatgccct gtgcagtctg tcgtg                                             25


<210> 46
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 46
ggtctagcta cnaaa                                                        15


<210> 47
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 47
ggtctagcta cnaag                                                        15


<210> 48
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 48
ggtctagcta cngat                                                        15


<210> 49
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 49
ggtctagcta cngac                                                        15


<210> 50
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 50
ggtctagcta cnaat                                                        15


<210> 51
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 51
ggtctagcta cnaac                                                        15


<210> 52
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 52
ggtctagcta cncgt                                                        15


<210> 53
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 53
ggtctagcta cncgc                                                        15


<210> 54
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 54
ggtctagcta cncga                                                        15


<210> 55
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 55
ggtctagcta cncgg                                                        15


<210> 56
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 56
ggtctagcta cnaga                                                        15


<210> 57
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 57
ggtctagcta cnagg                                                        15


<210> 58
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 58
aataggtgat ttt                                                          13


<210> 59
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 59
ggtctagcta cngaa                                                        15


<210> 60
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 60
ggtctagcta cngag                                                        15


<210> 61
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 61
aataggtgat tttggtctag ctacaga                                           27


