                         SEQUENCE LISTING

<110>  Montagnier, Luc
 
<120>  Identification of Rickettsia as a Bacterial Cofactor in Patients 
       Infected with Human Immunodeficiency Virus

<130>  410555WO

<140>  PCT/US2013/023451
<141>  2013-01-23

<150>  US 61/716,123
<151>  2012-11-09

<150>  US 61/591,111
<151>  2012-01-26

<160>  33    

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  1
gcaacgcgaa aaaccttacc                                                   20


<210>  2
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  2
gacgggcagt gtgtacaa                                                     18


<210>  3
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  3
gcctacagat taaaggct                                                     18


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  4
atcatartca ccatcaccta                                                   20


<210>  5
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  5
cytacagagt gaaggct                                                      17


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  6
atcatartca ccatcaccta                                                   20


<210>  7
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  7
ccttacactc agccagacat                                                   20


<210>  8
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  8
ccaggtgtgt ggcttataca                                                   20


<210>  9
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  9
catagcttcc tagtaagtag accag                                             25


<210>  10
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  10
aggggagtct gagatggt                                                     18


<210>  11
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  11
actggagagg tggaggtt                                                     18


<210>  12
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  12
ggtaattcct atgtgcgagg t                                                 21


<210>  13
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  13
tcaaaagaca gtggtgactc t                                                 21


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  14
atgtctggct gagtgtaagg                                                   20


<210>  15
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  15
atgtagttga gcagttttga atga                                              24


<210>  16
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  16
tcctgcctta gtgaggatct                                                   20


<210>  17
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  17
atgaataggt gatggtgatg act                                               23


<210>  18
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  18
ccgtcattta agcctttaat ctca                                              24


<210>  19
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  19
gtagtctttt ggcatctctt tgta                                              24


<210>  20
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  20
cagcctggag aacagagtg                                                    19


<210>  21
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  21
gatctagcag ttcataggaa ggaa                                              24


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  22
ggctgaaaca atggggtttt                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  23
tttagtagac ccctcgacca                                                   20


<210>  24
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  24
ctgacgacag ccatgca                                                      17


<210>  25
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  25
gcagtgggga atattggaca                                                   20


<210>  26
<211>  237
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  237 bp amplicon generated with MSP2 primer #3 and MSP2 primer #5
       by PCR

<400>  26
atcatagtca ccatcaccta ccagctgtat aagccacaca cctgggagtc ctcctagcct       60

ttttcctcct cctctcatcc tccatatccc attgaccgtc agggcctact gagtctacac      120

tccaattttc ttttaaatct atccccactg ccactgtcct agtctaaggc aataccatct      180

ggtcacccag atcattccat agcttcctag taagtagacc agccttcact ctgtaag         237


<210>  27
<211>  213
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  213 bp amplicon generated with MSP2 primer #2 and MSP2 primer #5
       by PCR

<400>  27
gcctacagat taaaggctta aatgacggtg aaaacttagt attctttggg tggacaatag       60

tgaaatttgc actttggaca gaatgacatg tacaaaaaga gtcaagaaac tttttaatct      120

atttaaagga ctcaaagtaa tttgtgaagg ccatagcgta aaataacttc agtggatgga      180

atgggatgat gaataggtga tggtgactat gat                                   213


<210>  28
<211>  546
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  546 bp amplicon of genomic human chromosome 1 amplified by 
       primers hChr1/14179308 S and hChr1/14179853 AS

<400>  28
ccttacactc agccagacat atatttgtgt tttgttatcc atgtgcacag agactttggc       60

attctgggtg aaggaagaaa gaagagaata tacatggaaa cccaggggta agagaaaagg      120

acaacagaga atgtggcatg gggaatgctc tgctgggtca cattgaatgg ttctgaacca      180

ctgtggaaaa aaaggagtta gaaagaatca gatgccgaag gagccaattt tcacaatact      240

ccgagactca gggcaaaagc agccttgttc tagtagccta tgggtaaaag aagacacaga      300

actgagggga ggacttttcc cctgagtcca ccacaaaccg ccatggagct gaggcagcct      360

gaagtctcag gggcatggga gggatttgcc ttttggattt ctccaatggg atgtcttaca      420

ggcacttcat atttagcaga tccaaaactt aactcagata ctcctcttgc catatctgtt      480

cctcttgctg tgttcctgac catgattatc accatcacct accagctgta taagccacac      540

acctgg                                                                 546


<210>  29
<211>  1644
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  1644 bp amplicon of genomic human chromosome 7 amplified by 
       primers hChr7/4292976 S and hChr7/4294619 AS

<400>  29
atgtagttga gcagttttga atgagtttct taatcctgag ttctagttta agaaaatatt       60

aaaaataaaa aattatgtca ccaactaaat ttttactgca gataatcata agttggttag      120

attggacctt cattgtgaaa tgcagtaact ttggtttaag caatatccaa aaccagaaat      180

tggtcgaggg gtctactaaa ttccgttttc ttttgttcta aacaattaaa cattctaaaa      240

tttagggaaa aggaccaatg gtgcaaacat tttagagctg acagttgtgt gccatatgcc      300

atgattctgt tacaaatgaa cagtattcag attcaaaatc agtgtaaaca ctgtgtgtgt      360

gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtattttaca cagccattta aatattaacc      420

gcctttgagt attaggggaa aaaacagaaa ctaaaagcga atatatttgt tcctgaatcc      480

tcccaccaaa ccacttttta aattaattat atttcctgcc ttagtgagga tcttcctatt      540

catcaaagat aaaataccaa atataattta ctctccttct ctacctcacc cccaatattc      600

aacaattccc tattttattt tgattttact tcctattgtc tctcagtgca tccttactac      660

tggtttctgg cctcaatgtc tctttccata aatacttcct ccagggcttc agcagtgtat      720

attgcaatcc atgagtgtga tgcccttata agctgtacag gcacaaccca ggcaaacata      780

cacaatgacc ataatcataa cagtcattac tggtgccttt actctggttt tatccatccc      840

ccaacaatcc tttaatcctc cactagagtt tattctttta agtgaaaatc tggattctta      900

tctcccctag tatgtatctc ttagtgaatt tttatatgag atagtcatca ccatcaccta      960

ttcatcatcc cattccatcc actgaagtta ttttacgcta tggccttcac aaatttactt     1020

tgagtccttt aaatagatta aaaagtttct tgactctttt tgtacatgtc attctgtcca     1080

aagtgcaaat ttcactattg tccacccaaa gaatactaag ttttcaccgt catttaagcc     1140

tttaatctca ggatctcaca ataaatacaa tcactctttc ctatatgcct aatcttctgc     1200

ttgagcataa ttttaatgtg ctaactattc tgtaattata tatatatttt taattcagcc     1260

acttctctca ctagaaagtg agtttgttga aatcagggta agtatatttt atgtttggat     1320

gaattcccca tcacaatact tcacatgtag ttatctagtc accaattttt attgaaatta     1380

attgtacata taataaaact ttaatataaa atgtttctct tgaggggaga ttttctttgt     1440

aaaactatcc ttctgagctt tgtgatgtga tgattgtcta atgtctgttg caagattaag     1500

gaaaatgtat ttgaatgcaa atgaacttac actgtcatac caaaagtgtg ataatttctt     1560

gctcctgaac tcactctccc tacctgccta ttaaaatcag aatacacaga tctgtatctg     1620

tacaaagaga tgccaaaaga ctac                                            1644


<210>  30
<211>  396
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  396 bp amplicon of genomic human chromosome 1 amplified by 
       primers hChr1/14180006 S and hChr1/14180401 AS

<400>  30
catagcttcc tagtaagtag accagccttc agtctgagcc ctcctcggtc cttcctcccc       60

agtgctgctg gagtaatcct tctaacacaa caatgaaagc aggtcactgc ggctcaaatg      120

atgtcagcgg ctttatcatc catgttgcct ggcttttcac aggcatgtct tgcagtgcag      180

ccttataact ctctcaacac aactctgtat cctcctcatt cttcatgctt ttataatgtc      240

aagccatgtg acactcccta aatataccat gttttctctt tttcctcctc cccctctctc      300

atttgcagct tcccatactt atcttcctaa acactactct ttttgaaatg tttatttcaa      360

gggtttctta tcttttaaac catctcagac tcccct                                396


<210>  31
<211>  1088
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  1088 bp amplicon of genomic human chromosome 1 amplified by 
       primers hChr1/14180006 S and hChr1/14181093 AS

<400>  31
catagcttcc tagtaagtag accagccttc agtctgagcc ctcctcggtc cttcctcccc       60

agtgctgctg gagtaatcct tctaacacaa caatgaaagc aggtcactgc ggctcaaatg      120

atgtcagcgg ctttatcatc catgttgcct ggcttttcac aggcatgtct tgcagtgcag      180

ccttataact ctctcaacac aactctgtat cctcctcatt cttcatgctt ttataatgtc      240

aagccatgtg acactcccta aatataccat gttttctctt tttcctcctc cccctctctc      300

atttgcagct tcccatactt atcttcctaa acactactct ttttgaaatg tttatttcaa      360

gggtttctta tcttttaaac catctcagac tcccctgggg attacccctt ttcctatgtt      420

tttattgtag catcctcaca aattcacttt agttccttcg cattctggtg tcgctatata      480

ttagtgggac tatgtcccca ttaacctgtt agatctcttg agaaaaggga catgtctttt      540

catcttgagt tccccaatac ttagtattgt gcttagcata tgctaggtgc tcagtaaata      600

tttgatatgt gtgtgaacga atgaatcaat caatcaataa caaatgacag acaaactcca      660

acccccaaac ctaaaaaaaa aaaatccaaa ctttcccctt gctcttagtg tagatactgc      720

tcatcaacat aaggcaaatt cttcctgcgc gtctcaatac agaggaggcg agaactcaca      780

gaatcacaga attagagcac tggctttggc atgagaacac cctgagttaa aatctggctt      840

ctgctattta ttagccacat gacagtgaat ctccttgagc ttctgttttg tacaaactta      900

agtttggctt tgtgatctta ttcctctttg gtgcatctgt acaacccaac tgcttattca      960

tatgacactg ctaaaacatg ccttgccttc tcccccactt ttttttttgg agacagaatc     1020

tccctttgtc acccaggctg gaattcagtg gcgtgatctc ggctcactgc aacctccacc     1080

tctccagt                                                              1088


<210>  32
<211>  1494
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  1494 bp amplicon of genomic human chromosome 7 amplified by 
       primers hChr7/4293490 S and hChr7/4294983 AS

<400>  32
tcctgcctta gtgaggatct tcctattcat caaagataaa ataccaaata taatttactc       60

tccttctcta cctcaccccc aatattcaac aattccctat tttattttga ttttacttcc      120

tattgtctct cagtgcatcc ttactactgg tttctggcct caatgtctct ttccataaat      180

acttcctcca gggcttcagc agtgtatatt gcaatccatg agtgtgatgc ccttataagc      240

tgtacaggca caacccaggc aaacatacac aatgaccata atcataacag tcattactgg      300

tgcctttact ctggttttat ccatccccca acaatccttt aatcctccac tagagtttat      360

tcttttaagt gaaaatctgg attcttatct cccctagtat gtatctctta gtgaattttt      420

atatgagata gtcatcacca tcacctattc atcatcccat tccatccact gaagttattt      480

tacgctatgg ccttcacaaa ttactttgag tcctttaaat agattaaaaa gtttcttgac      540

tctttttgta catgtcattc tgtccaaagt gcaaatttca ctattgtcca cccaaagaat      600

actaagtttt caccgtcatt taagccttta atctcaggat ctcacaataa atacaatcac      660

tctttcctat atgcctaatc ttctgcttga gcataatttt aatgtgctaa ctattctgta      720

attatatata tatttttaat tcagccactt ctctcactag aaagtgagtt tgttgaaatc      780

agggtaagta tattttatgt ttggatgaat tccccatcac aatacttcac atgtagttat      840

ctagtcacca atttttattg aaattaattg tacatataat aaaactttaa tataaaatgt      900

ttctcttgag gggagatttt ctttgtaaaa ctatccttct gagctttgtg atgtgatgat      960

tgtctaatgt ctgttgcaag attaaggaaa atgtatttga atgcaaatga acttacactg     1020

tcataccaaa agtgtgataa tttcttgctc ctgaactcac tctccctacc tgcctattaa     1080

aatcagaata cacagatctg tatctgtaca aagagatgcc aaaagactac tttcatgctg     1140

caacatgatt atgtgccccc aaaacctgga tatttatagt atagtatcca gtattttcaa     1200

tctaagctgt actggagccc gaagctaaag gaaaattagt aatactgatg ctccctttat     1260

ttaaactttt aagactttat catggcatta attttgactt ttaaaaatat tatcattttt     1320

tttggacccc cttaaatttt gttcccgagt tgaatgcctc actgggactt gggtgaatga     1380

atgctcaccc tagtcctaga ttaggtactc atcttaaata ctgttagttt ggggtggttt     1440

tttttttttt tttttttttt tttttgacag agcctcactc tgttctccag gctg           1494


<210>  33
<211>  681
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  681 bp amplicon of HIV-negative subject amplified by primers of 
       SEQ ID NOs: 24 and 25

<400>  33
gcacctgtat gtgaattccc gaaggcactc ccgcatctct gcaggattct cactatgtca       60

agaccaggta aggttcttcg cgttgcatcg aattaaacca catgctccac cgcttgtgcg      120

ggcccccgtc aattcatttg agttttaacc ttgcggccgt actccccagg cggtctactt      180

atcgcgttaa ctgcgccact aaagtctcaa ggaccccaac ggctagtaga catcgtttac      240

ggcgtggact accagggtat ctaatcctgt ttgctaccca cgctttcgaa tctcagtgtc      300

aatattatgc caggaagctg ccttcgccat cggcattcct ccagatctct acgcatttca      360

ccgctacacc tggaattcta cttccctctc acatattcta gcaccaccag tatcacatgc      420

agttcccagg ttaagcccgg ggatttcaca tgtgacttaa tgagccacct acactcgctt      480

tacgcccagt aattccgatt aacgctcgca ccctctgtat taccgcggct gctggcacag      540

agttagccgg tgcttattct gcaggtaacg tctaatctaa tgggtattaa ccattagcct      600

ctcctccctg cttaaagtgc tttacaacca aaaggccttc ttcacacacg cggcatggct      660

ggatcagggt tgccccccat t                                                681


