
                                SEQUENCE LISTING

<110> Falco, Carl
      Lassner, Michael
      Li, Zhongsen
      Scelonge, Christopher

<120> Methods And Compositions For Generating
  Complex Trait Loci

<130> 35718-428063

<150> US 61/591,329
<151> 2012-01-27

<160> 13

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT1 Recombination Site

<400> 1
agttcctata ctttctagag aataggaact                                  30

<210> 2
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT5 Recombination Site

<400> 2
agttcctata ctcttttgag aataggaact                                  30

<210> 3
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT6 Recombination Site

<400> 3
agttcctata ctttttgaag aataggaact                                  30

<210> 4
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT7 Recombination Site

<400> 4
agttcctata cttattgaag aataggaact                                  30

<210> 5
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT12 Recombination Site

<400> 5
agttcctata ctctatgtag aataggaact                                  30

<210> 6
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Minimal FRT87 Recombination Site

<400> 6
agttcctata ctttctggag aataggaact                                  30

<210> 7
<211> 1032
<212> DNA
<213> Bacteriophage P1

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> Nucleotide sequence encoding Cre Recombinase

<400> 7
atgtccaatt tactgaccgt acaccaaaat ttgcctgcat taccggtcga tgcaacgagt 60
gatgaggttc gcaagaacct gatggacatg ttcagggatc gccaggcgtt ttctgagcat 120
acctggaaaa tgcttctgtc cgtttgccgg tcgtgggcgg catggtgcaa gttgaataac 180
cggaaatggt ttcccgcaga acctgaagat gttcgcgatt atcttctata tcttcaggcg 240
cgcggtctgg cagtaaaaac tatccagcaa catttgggcc agctaaacat gcttcatcgt 300
cggtccgggc tgccacgacc aagtgacagc aatgctgttt cactggttat gcggcggatc 360
cgaaaagaaa acgttgatgc cggtgaacgt gcaaaacagg ctctagcgtt cgaacgcact 420
gatttcgacc aggttcgttc actcatggaa aatagcgatc gctgccagga tatacgtaat 480
ctggcatttc tggggattgc ttataacacc ctgttacgta tagccgaaat tgccaggatc 540
agggttaaag atatctcacg tactgacggt gggagaatgt taatccatat tggcagaacg 600
aaaacgctgg ttagcaccgc aggtgtagag aaggcactta gcctgggggt aactaaactg 660
gtcgagcgat ggatttccgt ctctggtgta gctgatgatc cgaataacta cctgttttgc 720
cgggtcagaa aaaatggtgt tgccgcgcca tctgccacca gccagctatc aactcgcgcc 780
ctggaaggga tttttgaagc aactcatcga ttgatttacg gcgctaagga tgactctggt 840
cagagatacc tggcctggtc tggacacagt gcccgtgtcg gagccgcgcg agatatggcc 900
cgcgctggag tttcaatacc ggagatcatg caagctggtg gctggaccaa tgtaaatatt 960
gtcatgaact atatccgtaa cctggatagt gaaacagggg caatggtgcg cctgctggaa 1020
gatggcgatt ag                                                     1032

<210> 8
<211> 1260
<212> DNA
<213> Saccharomyces cerevisiae

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> Nucleotide sequence encoding FLP recombinase

<400> 8
atgccacaat ttggtatatt atgtaaaaca ccacctaagg tgcttgttcg tcagtttgtg 60
gaaaggtttg aaagaccttc aggtgagaaa atagcattat gtgctgctga actaacctat 120
ttatgttgga tgattacaca taacggaaca gcaatcaaga gagccacatt catgagctat 180
aatactatca taagcaattc gctgagtttc gatattgtca ataaatcact ccagtttaaa 240
tacaagacgc aaaaagcaac aattctggaa gcctcattaa agaaattgat tcctgcttgg 300
gaatttacaa ttattcctta ctatggacaa aaacatcaat ctgatatcac tgatattgta 360
agtagtttgc aattacagtt cgaatcatcg gaagaagcag ataagggaaa tagccacagt 420
aaaaaaatgc ttaaagcact tctaagtgag ggtgaaagca tctgggagat cactgagaaa 480
atactaaatt cgtttgagta tacttcgaga tttacaaaaa caaaaacttt ataccaattc 540
ctcttcctag ctactttcat caattgtgga agattcagcg atattaagaa cgttgatccg 600
aaatcattta aattagtcca aaataagtat ctgggagtaa taatccagtg tttagtgaca 660
gagacaaaga caagcgttag taggcacata tacttcttta gcgcaagggg taggatcgat 720
ccacttgtat atttggatga atttttgagg aattctgaac cagtcctaaa acgagtaaat 780
aggaccggca attcttcaag caataaacag gaataccaat tattaaaaga taacttagtc 840
agatcgtaca ataaagcttt gaagaaaaat gcgccttatt caatctttgc tataaaaaat 900
ggcccaaaat ctcacattgg aagacatttg atgacctcat ttctttcaat gaagggccta 960
acggagttga ctaatgttgt gggaaattgg agcgataagc gtgcttctgc cgtggccagg 1020
acaacgtata ctcatcagat aacagcaata cctgatcact acttcgcact agtttctcgg 1080
tactatgcat atgatccaat atcaaaggaa atgatagcat tgaaggatga gactaatcca 1140
attgaggagt ggcagcatat agaacagcta aagggtagtg ctgaaggaag catacgatac 1200
cccgcatgga atgggataat atcacaggag gtactagact acctttcatc ctacataaat 1260


<210> 9
<211> 1032
<212> DNA
<213> Artificial Sequence

<220> 
<223> Nucleotide sequence encoding Cre protein from
      Bacteriophage P1 having maize preferred codons
      (moCRE)
      

<400> 9
atgtccaacc tgctcacggt tcaccagaac cttccggctc ttccagtgga cgcgacgtcc 60
gatgaagtca ggaagaacct catggacatg ttccgcgaca ggcaagcgtt cagcgagcac 120
acctggaaga tgctgctctc cgtctgccgc tcctgggctg catggtgcaa gctgaacaac 180
aggaagtggt tccccgctga gcccgaggac gtgagggatt accttctgta cctgcaagct 240
cgcgggctgg cagtgaagac catccagcaa caccttggac aactgaacat gcttcacagg 300
cgctccggcc tcccgcgccc cagcgactcg aacgccgtga gcctcgtcat gcgccgcatc 360
aggaaggaaa acgtcgatgc cggcgaaagg gcaaagcagg ccctcgcgtt cgagaggacc 420
gatttcgacc aggtccgcag cctgatggag aacagcgaca ggtgccagga cattaggaac 480
ctggcgttcc tcggaattgc atacaacacg ctcctcagga tcgcggaaat tgcccgcatt 540
cgcgtgaagg acattagccg caccgacggc ggcaggatgc ttatccacat tggcaggacc 600
aagacgctcg tttccaccgc aggcgtcgaa aaggccctca gcctcggagt gaccaagctc 660
gtcgaacgct ggatctccgt gtccggcgtc gcggacgacc caaacaacta cctcttctgc 720
cgcgtccgca agaacggggt ggctgcccct agcgccacca gccaactcag cacgagggcc 780
ttggaaggta ttttcgaggc cacccaccgc ctgatctacg gcgcgaagga tgacagcggt 840
caacgctacc tcgcatggtc cgggcactcc gcccgcgttg gagctgctag ggacatggcc 900
cgcgccggtg tttccatccc cgaaatcatg caggcgggtg gatggacgaa cgtgaacatt 960
gtcatgaact acattcgcaa ccttgacagc gagacgggcg caatggttcg cctcctggaa 1020
gatggtgact ga                                                     1032

<210> 10
<211> 1260
<212> DNA
<213> Artificial Sequence

<220> 
<223> Nucleotide sequence encoding FLP protein having
      maize preferred codons (FLPm)
      
      

<400> 10
atgccccagt tcgacatcct ctgcaagacc ccccccaagg tgctcgtgag gcagttcgtg 60
gagaggttcg agaggccctc cggcgagaag atcgccctct gcgccgccga gctcacctac 120
ctctgctgga tgatcaccca caacggcacc gccattaaga gggccacctt catgtcatac 180
aacaccatca tctccaactc cctctccttc gacatcgtga acaagtccct ccagttcaaa 240
tacaagaccc agaaggccac catcctcgag gcctccctca agaagctcat ccccgcctgg 300
gagttcacca tcatccccta ctacggccag aagcaccagt ccgacatcac cgacatcgtg 360
tcatccctcc agcttcagtt cgagtcctcc gaggaggctg acaagggcaa ctcccactcc 420
aagaagatgc tgaaggccct cctctccgag ggcgagtcca tctgggagat caccgagaag 480
atcctcaact ccttcgagta cacctccagg ttcactaaga ccaagaccct ctaccagttc 540
ctcttcctcg ccaccttcat caactgcggc aggttctcag acatcaagaa cgtggacccc 600
aagtccttca agctcgtgca gaacaagtac ctcggcgtga tcatccagtg cctcgtgacc 660
gagaccaaga cctccgtgtc caggcacatc tacttcttct ccgctcgcgg caggatcgac 720
cccctcgtgt acctcgacga gttcctcagg aactcagagc ccgtgctcaa gagggtgaac 780
aggaccggca actcctcctc caacaagcag gagtaccagc tcctcaagga caacctcgtg 840
aggtcctaca acaaggccct caagaagaac gccccctact ccatcttcgc catcaagaac 900
ggccccaagt cccacatcgg taggcacctc atgacctcct tcctctcaat gaagggcctc 960
accgagctca ccaacgtggt gggcaactgg tccgacaaga gggcctccgc cgtggccagg 1020
accacctaca cccaccagat caccgccatc cccgaccact acttcgccct cgtgtcaagg 1080
tactacgcct acgaccccat ctccaaggag atgatcgccc tcaaggacga gactaacccc 1140
atcgaggagt ggcagcacat cgagcagctc aagggctccg ccgagggctc catcaggtac 1200
cccgcctgga acggcatcat ctcccaggag gtgctcgact acctctcctc ctacatcaac 1260


<210> 11
<211> 2963
<212> DNA
<213> Artificial Sequence

<220> 
<223> SSI target DNA fragment QC599A
      

<400> 11
cgcgccggta cccgggtacc gagctcacta gacgcggtga aattacctaa ttaacaccgg 60
tgtttaaaca ctagtaacgg ccgccagtgt gctggaattc gcccttccca agctttgctc 120
tagatcaaac tcacatccaa acataacatg gatatcttcc ttaccaatca tactaattat 180
tttgggttaa atattaatca ttatttttaa gatattaatt aagaaattaa aagatttttt 240
aaaaaaatgt ataaaattat attattcatg atttttcata catttgattt tgataataaa 300
tatatttttt ttaatttctt aaaaaatgtt gcaagacact tattagacat agtcttgttc 360
tgtttacaaa agcattcatc atttaataca ttaaaaaata tttaatacta acagtagaat 420
cttcttgtga gtggtgtggg agtaggcaac ctggcattga aacgagagaa agagagtcag 480
aaccagaaga caaataaaaa gtatgcaaca aacaaatcaa aatcaaaggg caaaggctgg 540
ggttggctca attggttgct acattcaatt ttcaactcag tcaacggttg agattcactc 600
tgacttcccc aatctaagcc gcggatgcaa acggttgaat ctaacccaca atccaatctc 660
gttacttagg ggcttttccg tcattaactc acccctgcca cccggtttcc ctataaattg 720
gaactcaatg ctcccctcta aactcgtatc gcttcagagt tgagaccaag acacactcgt 780
tcatatatct ctctgctctt ctcttctctt ctacctctca aggtactttt cttctccctc 840
taccaaatcc tagattccgt ggttcaattt cggatcttgc acttctggtt tgctttgcct 900
tgctttttcc tcaactgggt ccatctagga tccatgtgaa actctactct ttctttaata 960
tctgcggaat acgcgtttga ctttcagatc tagtcgaaat catttcataa ttgcctttct 1020
ttcttttagc ttatgagaaa taaaatcact ttttttttat ttcaaaataa accttgggcc 1080
ttgtgctgac tgagatgggg tttggtgatt acagaatttt agcgaatttt gtaattgtac 1140
ttgtttgtct gtagttttgt tttgttttct tgtttctcat acattcctta ggcttcaatt 1200
ttattcgagt ataggtcaca ataggaattc aaactttgag caggggaatt aatcccttcc 1260
ttcaaatcca gtttgtttgt atatatgttt aaaaaatgaa acttttgctt taaattctat 1320
tataactttt tttatggctg aaatttttgc atgtgtcttt gctctctgtt gtaaatttac 1380
tgtttaggta ctaactctag gcttgttgtg cagtttttga agtataacaa cagaagttcc 1440
tattccgaag ttcctattct ctagaaagta taggaacttc cactagtcca tgaaaaagcc 1500
tgaactcacc gcgacgtctg tcgagaagtt tctgatcgaa aagttcgaca gcgtctccga 1560
cctgatgcag ctctcggagg gcgaagaatc tcgtgctttc agcttcgatg taggagggcg 1620
tggatatgtc ctgcgggtaa atagctgcgc cgatggtttc tacaaagatc gttatgttta 1680
tcggcacttt gcatcggccg cgctcccgat tccggaagtg cttgacattg gggaattcag 1740
cgagagcctg acctattgca tctcccgccg tgcacagggt gtcacgttgc aagacctgcc 1800
tgaaaccgaa ctgcccgctg ttctgcagcc ggtcgcggag gccatggatg cgatcgctgc 1860
ggccgatctt agccagacga gcgggttcgg cccattcgga ccgcaaggaa tcggtcaata 1920
cactacatgg cgtgatttca tatgcgcgat tgctgatccc catgtgtatc actggcaaac 1980
tgtgatggac gacaccgtca gtgcgtccgt cgcgcaggct ctcgatgagc tgatgctttg 2040
ggccgaggac tgccccgaag tccggcacct cgtgcacgcg gatttcggct ccaacaatgt 2100
cctgacggac aatggccgca taacagcggt cattgactgg agcgaggcga tgttcgggga 2160
ttcccaatac gaggtcgcca acatcttctt ctggaggccg tggttggctt gtatggagca 2220
gcagacgcgc tacttcgagc ggaggcatcc ggagcttgca ggatcgccgc ggctccgggc 2280
gtatatgctc cgcattggtc ttgaccaact ctatcagagc ttggttgacg gcaatttcga 2340
tgatgcagct tgggcgcagg gtcgatgcga cgcaatcgtc cgatccggag ccgggactgt 2400
cgggcgtaca caaatcgccc gcagaagcgc ggccgtctgg accgatggct gtgtagaagt 2460
actcgccgat agtggaaacc gacgccccag cactcgtccg agggcaaagg aatagtgagg 2520
tacctaaaga aggagtgcgt cgaagcagat cgttcaaaca tttggcaata aagtttctta 2580
agattgaatc ctgttgccgg tcttgcgatg attatcatat aatttctgtt gaattacgtt 2640
aagcatgtaa taattaacat gtaatgcatg acgttattta tgagatgggt ttttatgatt 2700
agagtcccgc aattatacat ttaatacgcg atagaaaaca aaatatagcg cgcaaactag 2760
gataaattat cgcgcgcggt gtcatctatg ttactagatc gatgtcgacc cgggccctag 2820
gaggccggcc cagctgatga tcccggtgaa gttcctattc cgaagttcct attctccaga 2880
aagtatagga acttcactag agcttgcggc cgcgcatgct gacttaatca gctaacgcca 2940
ctcgaggggg ggcccggtac cgg                                         2963

<210> 12
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> all open reading frame stop codon ORFSTOP-B
      

<400> 12
tgaaattacc taattaa                                                17

<210> 13
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> all open reading frame stop codon ORFSTOP-A

<400> 13
tgacttaatc agctaa                                                 16
