
                                SEQUENCE LISTING

<110> Raytheon BBN Technologies Corp.
      Adler, Aaron Daniel
      Beal, Jacob Stuart Michael
      Yaman-Sirin, Fusun      

<120> METHODS OF EVALUATING GENETIC ELEMENTS
  

<130> 3547.005WO1

<150> US 61/565,434       
<151> 2011-11-30  

<160> 8

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 1979
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 1
gctccgaatt cgcccttgac agcagagatc cagtttggtt aattaattgg ctccggtgcc      60
cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttggtggg aggggtcggc     120
aattgaaccg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga tgtcgtgtac     180
tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt agtcgccgtg     240
aacgttcttt ttcgcaacgg gtttgccgcc agaacacagg taagtgccgt gtgtggttcc     300
cgcgggcctg gcctctttac gggttatggc ccttgcgtgc cttgaattac ttccacctgg     360
ctgcagtacg tgattcttga tcccgagctt cgggttggaa gtgggtggga gagttcgagg     420
ccttgcgctt aaggagcccc ttcgcctcgt gcttgagttg aggcctggcc tgggcgctgg     480
ggccgccgcg tgcgaatctg gtggcacctt cgcgcctgtc tcgctgcttt cgataagtct     540
ctagccattt aaaatttttg atgacctgct gcgacgcttt ttttctggca agatagtctt     600
gtaaatgcgg gccaagatct gcacactggt atttcggttt ttggggccgc gggcggcgac     660
ggggcccgtg cgtcccagcg cacatgttcg gcgaggcggg gcctgcgagc gcggccaccg     720
agaatcggac gggggtagtc tcaagctggc cggcctgctc tggtgcctgg cctcgcgccg     780
ccgtgtatcg ccccgccctg ggcggcaagg ctggcccggt cggcaccagt tgcgtgagcg     840
gaaagatggc cgcttcccgg ccctgctgca gggagctcaa aatggaggac gcggcgctcg     900
ggagagcggg cgggtgagtc acccacacaa aggaaaaggg cctttccgtc ctcagccgtc     960
gcttcatgtg actccacgga gtaccgggcg ccgtccaggc acctcgatta gttctcgagc    1020
ttttggagta cgtcgtcttt aggttggggg gaggggtttt atgcgatgga gtttccccac    1080
actgagtggg tggagactga agttaggcca gcttggcact tgatgtaatt ctccttggaa    1140
tttgcccttt ttgagtttgg atcttggttc attctcaagc ctcagacagt ggttcaaagt    1200
ttttttcttc catttcaggt gtcgtgagaa gggcgaattc gacccaagtt tgtacaaaaa    1260
agcagatggt gtctaagggc gaagagctga ttaaggagaa catgcacatg aagctgtaca    1320
tggagggcac cgtgaacaac caccacttca agtgcacatc cgagggcgaa ggcaagccct    1380
acgagggcac ccagaccatg agaatcaagg tggtcgaggg cggccctctc cccttcgcct    1440
tcgacatcct ggctaccagc ttcatgtacg gcagcaaaac cttcatcaac cacacccagg    1500
gcatccccga cttctttaag cagtccttcc ctgagggctt cacatgggag agagtcacca    1560
catacgaaga cgggggcgtg ctgaccgcta cccaggacac cagcctccag gacggctgcc    1620
tcatctacaa cgtcaagatc agaggggtga acttcccatc caacggccct gtgatgcaga    1680
agaaaacact cggctgggag gcctccaccg agatgctgta ccccgctgac ggcggcctgg    1740
aaggcagaag cgacatggcc ctgaagctcg tgggcggggg ccacctgatc tgcaacttga    1800
agaccacata cagatccaag aaacccgcta agaacctcaa gatgcccggc gtctactatg    1860
tggacagaag actggaaaga atcaaggagg ccgacaaaga gacctacgtc gagcagcacg    1920
aggtggctgt ggccagatac tgcgacctcc ctagcaaact ggggcacaaa cttaattga     1979

<210> 2
<211> 1985
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 2
gctccgaatt cgcccttgac agcagagatc cagtttggtt aattaattgg ctccggtgcc      60
cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttggtggg aggggtcggc     120
aattgaaccg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga tgtcgtgtac     180
tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt agtcgccgtg     240
aacgttcttt ttcgcaacgg gtttgccgcc agaacacagg taagtgccgt gtgtggttcc     300
cgcgggcctg gcctctttac gggttatggc ccttgcgtgc cttgaattac ttccacctgg     360
ctgcagtacg tgattcttga tcccgagctt cgggttggaa gtgggtggga gagttcgagg     420
ccttgcgctt aaggagcccc ttcgcctcgt gcttgagttg aggcctggcc tgggcgctgg     480
ggccgccgcg tgcgaatctg gtggcacctt cgcgcctgtc tcgctgcttt cgataagtct     540
ctagccattt aaaatttttg atgacctgct gcgacgcttt ttttctggca agatagtctt     600
gtaaatgcgg gccaagatct gcacactggt atttcggttt ttggggccgc gggcggcgac     660
ggggcccgtg cgtcccagcg cacatgttcg gcgaggcggg gcctgcgagc gcggccaccg     720
agaatcggac gggggtagtc tcaagctggc cggcctgctc tggtgcctgg cctcgcgccg     780
ccgtgtatcg ccccgccctg ggcggcaagg ctggcccggt cggcaccagt tgcgtgagcg     840
gaaagatggc cgcttcccgg ccctgctgca gggagctcaa aatggaggac gcggcgctcg     900
ggagagcggg cgggtgagtc acccacacaa aggaaaaggg cctttccgtc ctcagccgtc     960
gcttcatgtg actccacgga gtaccgggcg ccgtccaggc acctcgatta gttctcgagc    1020
ttttggagta cgtcgtcttt aggttggggg gaggggtttt atgcgatgga gtttccccac    1080
actgagtggg tggagactga agttaggcca gcttggcact tgatgtaatt ctccttggaa    1140
tttgcccttt ttgagtttgg atcttggttc attctcaagc ctcagacagt ggttcaaagt    1200
ttttttcttc catttcaggt gtcgtgagaa gggcgaattc gacccaagtt tgtacaaaaa    1260
agcagatggt gagcaagggc gaggagctgt tcaccggggt ggtgcccatc ctggtcgagc    1320
tggacggcga cgtaaacggc cacaagttca gcgtgagggg cgagggcgag ggcgatgcca    1380
ccaacggcaa gctgaccctg aagttcatct gcaccaccgg caagctgccc gtgccctggc    1440
ccaccctcgt gaccaccctg agccacggcg tgcagtgctt cgcccgctac cccgaccaca    1500
tgaagcagca cgacttcttc aagtccgcca tgcccgaagg ctacgtccag gagcgcacca    1560
tcttcttcaa ggacgacggc acctacaaga cccgcgccga ggtgaagttc gagggcgaca    1620
ccctagtgaa ccgcatcgag ctgaagggcg tcgacttcaa ggaggacggc aacatcctgg    1680
ggcacaagct ggagtacaac ttcaacagcc acaacatcta tatcatggcc gtcaagcaga    1740
agaacggcat caaggtgaac ttcaagatcc gccacaacgt ggaggacggc agcgtgcagc    1800
tcgccgacca ctaccagcag aacaccccca tcggcgacgg ccccgtgctg ctgcccgaca    1860
gccactacct gagcacccag tccgtgctga gcaaagaccc caacgagaag cgcgatcaca    1920
tggtcctgct ggagttccgc accgccgccg ggatcactct cggcatggac gagctgtaca    1980
agtaa                                                                1985

<210> 3
<211> 720
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 3
atggtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt cgagctggac      60
ggcgacgtaa acggccacaa gttcagcgtg aggggcgagg gcgagggcga tgccaccaac     120
ggcaagctga ccctgaagtt catctgcacc accggcaagc tgcccgtgcc ctggcccacc     180
ctcgtgacca ccctgagcca cggcgtgcag tgcttcgccc gctaccccga ccacatgaag     240
cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg caccatcttc     300
ttcaaggacg acggcaccta caagacccgc gccgaggtga agttcgaggg cgacacccta     360
gtgaaccgca tcgagctgaa gggcgtcgac ttcaaggagg acggcaacat cctggggcac     420
aagctggagt acaacttcaa cagccacaac atctatatca tggccgtcaa gcagaagaac     480
ggcatcaagg tgaacttcaa gatccgccac aacgtggagg acggcagcgt gcagctcgcc     540
gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc cgacagccac     600
tacctgagca cccagtccgt gctgagcaaa gaccccaacg agaagcgcga tcacatggtc     660
ctgctggagt tccgcaccgc cgccgggatc actctcggca tggacgagct gtacaagtaa     720

<210> 4
<211> 714
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 4
atggtgtcta agggcgaaga gctgattaag gagaacatgc acatgaagct gtacatggag      60
ggcaccgtga acaaccacca cttcaagtgc acatccgagg gcgaaggcaa gccctacgag     120
ggcacccaga ccatgagaat caaggtggtc gagggcggcc ctctcccctt cgccttcgac     180
atcctggcta ccagcttcat gtacggcagc aaaaccttca tcaaccacac ccagggcatc     240
cccgacttct ttaagcagtc cttccctgag ggcttcacat gggagagagt caccacatac     300
gaagacgggg gcgtgctgac cgctacccag gacaccagcc tccaggacgg ctgcctcatc     360
tacaacgtca agatcagagg ggtgaacttc ccatccaacg gccctgtgat gcagaagaaa     420
acactcggct gggaggcctc caccgagatg ctgtaccccg ctgacggcgg cctggaaggc     480
agaagcgaca tggccctgaa gctcgtgggc gggggccacc tgatctgcaa cttgaagacc     540
acatacagat ccaagaaacc cgctaagaac ctcaagatgc ccggcgtcta ctatgtggac     600
agaagactgg aaagaatcaa ggaggccgac aaagagacct acgtcgagca gcacgaggtg     660
gctgtggcca gatactgcga cctccctagc aaactggggc acaaacttaa ttga           714

<210> 5
<211> 1275
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 5
tggctccggt gcccgtcagt gggcagagcg cacatcgccc acagtccccg agaagttggg      60
gggaggggtc ggcaattgaa ccggtgccta gagaaggtgg cgcggggtaa actgggaaag     120
tgatgtcgtg tactggctcc gcctttttcc cgagggtggg ggagaaccgt atataagtgc     180
agtagtcgcc gtgaagctag aattgtgagc ggataacaat tccacagtcg accctaggtt     240
gtgtcgcgag tgttggatcc cagctgacac caattgtgag cgctcacaat tgctagccgt     300
tctttttcgc aacgggtttg ccgccagaac acaggtaagt gccgtgtgtg gttcccgcgg     360
gcctggcctc tttacgggtt atggcccttg cgtgccttga attacttcca cctggctgca     420
gtacgtgatt cttgatcccg agcttcgggt tggaagtggg tgggagagtt cgaggccttg     480
cgcttaagga gccccttcgc ctcgtgcttg agttgaggcc tggcctgggc gctggggccg     540
ccgcgtgcga atctggtggc accttcgcgc ctgtctcgct gctttcgata agtctctagc     600
catttaaaat ttttgatgac ctgctgcgac gctttttttc tggcaagata gtcttgtaaa     660
tgcgggccaa gatctgcaca ctggtatttc ggtttttggg gccgcgggcg gcgacggggc     720
ccgtgcgtcc cagcgcacat gttcggcgag gcggggcctg cgagcgcggc caccgagaat     780
cggacggggg tagtctcaag ctggccggcc tgctctggtg cctggcctcg cgccgccgtg     840
tatcgccccg ccctgggcgg caaggctggc ccggtcggca ccagttgcgt gagcggaaag     900
atggccgctt cccggccctg ctgcagggag ctcaaaatgg aggacgcggc gctcgggaga     960
gcgggcgggt gagtcaccca cacaaaggaa aagggccttt ccgtcctcag ccgtcgcttc    1020
atgtgactcc acggagtacc gggcgccgtc caggcacctc gattagttct cgagcttttg    1080
gagtacgtcg tctttaggtt ggggggaggg gttttatgcg atggagtttc cccacactga    1140
gtgggtggag actgaagtta ggccagcttg gcacttgatg taattctcct tggaatttgc    1200
cctttttgag tttggatctt ggttcattct caagcctcag acagtggttc aaagtttttt    1260
tcttccattt caggt                                                     1275

<210> 6
<211> 220
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 6
gctccgaatt gggacagcag agatccagtt tggttaatta atagacggag tactgtcctc      60
cgagcggagt actgtcctcc gactcgagcg gagtactgtc ctccgatcgg agtactgtcc     120
tccgcgaatt ccggagtact gtcctccgaa gacgctagcg gggggctata aaagggggtg     180
ggggcgttcg tcctcactct caattcggcc caattcgacc                           220

<210> 7
<211> 338
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 7
aattgtgagc gctcacaatt gcaggtccga ggttctagac gagtttactc cctatcagtg      60
atagagaacg atgtcgagtt tactccctat cagtgataga gaacgtatgt cgagtttact     120
ccctatcagt gatagagaac gtatgtcgag tttactccct atcagtgata gagaacgtat     180
gtcgagttta tccctatcag tgatagagaa cgtatgtcga gtttactccc tatcagtgat     240
agagaacgta tgtcgaggta ggcgtgtacg gtgggaggcc tatataagca gagctcgttt     300
agtgaaccgt cagatcgcaa ttgtgagcgc tcacaatt                             338

<210> 8
<211> 1243
<212> DNA
<213> Artificial Sequence

<220> 
<223> A synthetic oligonucleotide

<400> 8
gctccgaatt cgcccttgac agcagagatc cagtttggtt aattaattgg ctccggtgcc      60
cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttggtggg aggggtcggc     120
aattgaaccg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga tgtcgtgtac     180
tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt agtcgccgtg     240
aacgttcttt ttcgcaacgg gtttgccgcc agaacacagg taagtgccgt gtgtggttcc     300
cgcgggcctg gcctctttac gggttatggc ccttgcgtgc cttgaattac ttccacctgg     360
ctgcagtacg tgattcttga tcccgagctt cgggttggaa gtgggtggga gagttcgagg     420
ccttgcgctt aaggagcccc ttcgcctcgt gcttgagttg aggcctggcc tgggcgctgg     480
ggccgccgcg tgcgaatctg gtggcacctt cgcgcctgtc tcgctgcttt cgataagtct     540
ctagccattt aaaatttttg atgacctgct gcgacgcttt ttttctggca agatagtctt     600
gtaaatgcgg gccaagatct gcacactggt atttcggttt ttggggccgc gggcggcgac     660
ggggcccgtg cgtcccagcg cacatgttcg gcgaggcggg gcctgcgagc gcggccaccg     720
agaatcggac gggggtagtc tcaagctggc cggcctgctc tggtgcctgg cctcgcgccg     780
ccgtgtatcg ccccgccctg ggcggcaagg ctggcccggt cggcaccagt tgcgtgagcg     840
gaaagatggc cgcttcccgg ccctgctgca gggagctcaa aatggaggac gcggcgctcg     900
ggagagcggg cgggtgagtc acccacacaa aggaaaaggg cctttccgtc ctcagccgtc     960
gcttcatgtg actccacgga gtaccgggcg ccgtccaggc acctcgatta gttctcgagc    1020
ttttggagta cgtcgtcttt aggttggggg gaggggtttt atgcgatgga gtttccccac    1080
actgagtggg tggagactga agttaggcca gcttggcact tgatgtaatt ctccttggaa    1140
tttgcccttt ttgagtttgg atcttggttc attctcaagc ctcagacagt ggttcaaagt    1200
ttttttcttc catttcaggt gtcgtgagaa gggcgaattc gac                      1243


