                                SEQUENCE LISTING

<110> Princen, Fred
      Lockton, Steven
      Croner, Lisa J.
      Fletcher, Frederick A.
      Stockfish, Thomas
      Singh, Sharat
      Nestec S.A.

<120> Methods for Improving Inflammatory Bowel
  Disease Diagnosis

<130> 88473-855377

<140> WO PCT/US12/61202   
<141> 2012-10-19  

<150> US 61/550,293       
<151> 2011-10-21  

<150> US 61/553,853       
<151> 2011-10-31  

<150> US 61/567,096       
<151> 2011-12-05  

<150> US 61/570,271       
<151> 2011-12-13  

<160> 24

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ATG16L1 SNP rs2241880

<400> 1
cccagtcccc caggacaatg tggatactca tcctggttct ggtaaagaag t          51

<210> 2
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ATG16L1 SNP rs2241880

<400> 2
cccagtcccc caggacaatg tggatgctca tcctggttct ggtaaagaag t          51

<210> 3
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting ATG16L1 SNP rs2241880

<400> 3
cccagtcccc caggacaatg tggatrctca tcctggttct ggtaaagaag t          51

<210> 4
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting STAT3 SNP rs744166

<400> 4
ctgtttgttc tataaattac tgtcaagctc gattccctca agacattaca g          51

<210> 5
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting STAT3 SNP rs744166

<400> 5
ctgtttgttc tataaattac tgtcaggctc gattccctca agacattaca g          51

<210> 6
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting STAT3 SNP rs744166

<400> 6
ctgtttgttc tataaattac tgtcargctc gattccctca agacattaca g          51

<210> 7
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs3737240

<400> 7
cccactgttt tccccattcc aggaacgcca gctccatttg gggaccagag c          51

<210> 8
<211> 50
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs3737240

<400> 8
ccactgtttt ccccattcca ggaatgccag ctccatttgg ggaccagagc            50

<210> 9
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting ECM1 SNP rs3737240

<400> 9
cccactgttt tccccattcc aggaaygcca gctccatttg gggaccagag c          51

<210> 10
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs13294

<400> 10
ccgggacatc ttgaccattg acatcagtcg agtcaccccc aacctcatgg g          51

<210> 11
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs13294

<400> 11
ccgggacatc ttgaccattg acatcggtcg agtcaccccc aacctcatgg g          51

<210> 12
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting ECM1 SNP rs13294

<400> 12
ccgggacatc ttgaccattg acatcrgtcg agtcaccccc aacctcatgg g          51

<210> 13
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs10883365

<400> 13
tttcgttctc agacggtttg aaggtatttg tgccaacgtg acccccgggg a          51

<210> 14
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs10883365

<400> 14
tttcgttctc agacggtttg aaggtgtttg tgccaacgtg acccccgggg a          51

<210> 15
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting NKX2-3 SNP rs10883365

<400> 15
tttcgttctc agacggtttg aaggtrtttg tgccaacgtg acccccgggg a          51

<210> 16
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs6584283

<400> 16
ctgcagagcg tctgtgggcg tgtatcggcg atcaggcgct ggaggggcgc t          51

<210> 17
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs6584283

<400> 17
ctgcagagcg tctgtgggcg tgtattggcg atcaggcgct ggaggggcgc t          51

<210> 18
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting NKX2-3 SNP rs6584283

<400> 18
ctgcagagcg tctgtgggcg tgtatyggcg atcaggcgct ggaggggcgc t          51

<210> 19
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs7511649

<400> 19
tttctgactt ctccctgtaa atcttcttct gtatgattta ttttggtaga t          51

<210> 20
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting ECM1 SNP rs7511649

<400> 20
tttctgactt ctccctgtaa atctttttct gtatgattta ttttggtaga t          51

<210> 21
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting ECM1 SNP rs7511649

<400> 21
tttctgactt ctccctgtaa atcttyttct gtatgattta ttttggtaga t          51

<210> 22
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs11190140

<400> 22
cattcaggct cctgatttca ataggcggaa aagaaggctg ccaaggctgg g          51

<210> 23
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic probe for detecting NKX2-3 SNP rs11190140

<400> 23
cattcaggct cctgatttca ataggtggaa aagaaggctg ccaaggctgg g          51

<210> 24
<211> 51
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic sequence from which to derive probes for
      detecting NKX2-3 SNP rs11190140

<400> 24
cattcaggct cctgatttca ataggyggaa aagaaggctg ccaaggctgg g          51



