                         SEQUENCE LISTING

<110>  F. Hoffmann-La Roche AG, Basel (CH)
       Roche Diagnostics GmbH, Mannheim (DE)
 
<120>  cDNA biomarkers in whole blood for CRC assessment

<130>  30645

<150>  EP11182807.5
<151>  2011-09-26

<160>  135   

<170>  PatentIn version 3.5

<210>  1
<211>  534
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 206130_s_at; covers a part of the corresponding 
       human genome target sequence at the ASGR2 locus

<400>  1
ggagaacgca cacctggtgg tcatcaactc ctgggaggag cagaaattca ttgtacaaca       60

cacgaacccc ttcaatacct ggataggtct cacggacagt gatggctctt ggaaatgggt      120

ggatggcaca gactataggc acaactacaa gaactgggct gtcactcagc cagataattg      180

gcacgggcac gagctgggtg gaagtgaaga ctgtgttgaa gtccagccgg atggccgctg      240

gaacgatgac ttctgcctgc aggtgtaccg ctgggtgtgt gagaaaaggc ggaatgccac      300

cggcgaggtg gcctgacccc agcacacctc tggctaaccc ataccccaca cctgcccagc      360

tctggcttct ctgttgagga ttttgaggaa aggaagaaac actgagacag gggtatgggg      420

aagagctgag caaagagaga aaggaggtag tttaagagtc cctgaccctg gaggactgag      480

atcccacctc cttctgtaat tcattgtaat tattataatc gtcagcctct tcaa            534


<210>  2
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ASGR2 subsequence, assay 112469

<400>  2
cctggtggtc atcaactcct                                                   20


<210>  3
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ASGR2 subsequence, assay 112469

<400>  3
tgaaggggtt cgtgtgttg                                                    19


<210>  4
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ASGR2 transcript-specific amplicon of assay 112469

<400>  4
cctggtggtc atcaactcct gggaggagca gaaattcatt gtacaacaca cgaacccctt       60

ca                                                                      62


<210>  5
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ASGR2 
       transcript-specific amplicon of assay 112469

<400>  5
aggagcag                                                                 8


<210>  6
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ASGR2 subsequence, assay 112470

<400>  6
cagtgatggc tcttggaaat g                                                 21


<210>  7
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ASGR2 subsequence, assay 112470

<400>  7
gcccagttct tgtagttgtg c                                                 21


<210>  8
<211>  63
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ASGR2 transcript-specific amplicon of assay 112470

<400>  8
cagtgatggc tcttggaaat gggtggatgg cacagactat aggcacaact acaagaactg       60

ggc                                                                     63


<210>  9
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ASGR2 
       transcript-specific amplicon of assay 112470

<400>  9
tggatggc                                                                 8


<210>  10
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ASGR2 subsequence, assay 112471

<400>  10
ggaaaggaag aaacactgag aca                                               23


<210>  11
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ASGR2 subsequence, assay 112471

<400>  11
aactacctcc tttctctctt tgctc                                             25


<210>  12
<211>  66
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ASGR2 transcript-specific amplicon of assay 112471

<400>  12
ggaaaggaag aaacactgag acaggggtat ggggaagagc tgagcaaaga gagaaaggag       60

gtagtt                                                                  66


<210>  13
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ASGR2 
       transcript-specific amplicon of assay 112471

<400>  13
cttcccca                                                                 8


<210>  14
<211>  460
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 1558924_s_at; covers a part of the corresponding 
       human genome target sequence at the CLIP1 locus

<400>  14
gagcattttg gagcccggga agaaactcat cagaaggaga taaaggctct gtataccgcc       60

acggaaaagc tttccaaaga gaacgagtca ttgaaaagca agctggagca tgccaacaaa      120

gagaactcag atgtgatagc tctatggaag tccaaactgg agactgccat cgcatcccac      180

cagcaggcga tggaagaact gaaggtatct ttcagcaaag ggcttggaac agagacggca      240

gaatttgctg aactaaaaac acaaatagag aaaatgagac tagattacca acacgaaata      300

gaaaatttgc agaatcaaca agactctgaa cgggctgccc atgctaaaga gatggaagcc      360

ttgagggcta aactgatgaa agttattaaa gaaaaggaaa acagtctgga agccatcagg      420

tcgaaactgg acaaagcaga agaccagcat ctcgtagaaa                            460


<210>  15
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CLIP1 subsequence, assay 112472

<400>  15
ttgcagaatc aacaagactc tga                                               23


<210>  16
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CLIP1 subsequence, assay 112472

<400>  16
ccctcaaggc ttccatctc                                                    19


<210>  17
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CLIP1 transcript-specific amplicon of assay 112472

<400>  17
ttgcagaatc aacaagactc tgaacgggct gcccatgcta aagagatgga agccttgagg       60

g                                                                       61


<210>  18
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CLIP1 
       transcript-specific amplicon of assay 112472

<400>  18
tgggcagc                                                                 8


<210>  19
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CLIP1 subsequence, assay 112473

<400>  19
tgatagctct atggaagtcc aaact                                             25


<210>  20
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CLIP1 subsequence, assay 112473

<400>  20
agttcttcca tcgcctgct                                                    19


<210>  21
<211>  67
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CLIP1 transcript-specific amplicon of assay 112473

<400>  21
tgatagctct atggaagtcc aaactggaga ctgccatcgc atcccaccag caggcgatgg       60

aagaact                                                                 67


<210>  22
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CLIP1 
       transcript-specific amplicon of assay 112473

<400>  22
ctgccatc                                                                 8


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CLIP1 subsequence, assay 112474

<400>  23
ccaaactgga gactgccatc                                                   20


<210>  24
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CLIP1 subsequence, assay 112474

<400>  24
agccctttgc tgaaagatac c                                                 21


<210>  25
<211>  73
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CLIP1 transcript-specific amplicon of assay 112474

<400>  25
ccaaactgga gactgccatc gcatcccacc agcaggcgat ggaagaactg aaggtatctt       60

tcagcaaagg gct                                                          73


<210>  26
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CLIP1 
       transcript-specific amplicon of assay 112474

<400>  26
cagcaggc                                                                 8


<210>  27
<211>  529
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 225173_at; covers a part of the corresponding human
       genome target sequence at the ARHGAP18 locus


<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  n is a, c, g, or t

<400>  27
gaaagtttgc catttagccc taattgagct gactgncctc tatgatgtat tgggtattga       60

gctgaaacaa caaaaagctg tgaaaatcaa aacaaaagat tctggtcttt tttgcgttcc      120

attgacagcg ctattagaac aagatcagag gaaagtacca ggaatgcgaa tacccttgat      180

ctttcaaaaa ctgatttctc gaattgaaga gagaggtttg gaaacagaag gcctcttacg      240

gatccctgga gctgccatta gaatcaagaa tctttgccaa gaactagaag caaagtttta      300

tgaagggact tttaattggg aaagtgtcaa acagcatgat gccgccagcc tgctgaagct      360

cttcattcgg gagttgcccc agccactgct cagtgtggag tatctcaaag cctttcaggc      420

tgtccagaat cttccaacca agaagcagca actacaggct ttgaaccttc ttgtcatcct      480

cctacctgat gcaaacaggg acacactgaa ggcccttctt gaatttctc                  529


<210>  28
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ARHGAP18 subsequence, assay 
       112475

<400>  28
tgggaaagtg tcaaacagca                                                   20


<210>  29
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ARHGAP18 subsequence, assay 
       112475

<400>  29
ggcaactccc gaatgaag                                                     18


<210>  30
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ARHGAP18 transcript-specific amplicon of assay 112475

<400>  30
tgggaaagtg tcaaacagca tgatgccgcc agcctgctga agctcttcat tcgggagttg       60

cc                                                                      62


<210>  31
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ARHGAP18 
       transcript-specific amplicon of assay 112475

<400>  31
cagcaggc                                                                 8


<210>  32
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ARHGAP18 subsequence, assay 
       112476

<400>  32
gaaacagaag gcctcttacg g                                                 21


<210>  33
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ARHGAP18 subsequence, assay 
       112476

<400>  33
agttcttggc aaagattctt gatt                                              24


<210>  34
<211>  65
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ARHGAP18 transcript-specific amplicon of assay 112476

<400>  34
gaaacagaag gcctcttacg gatccctgga gctgccatta gaatcaagaa tctttgccaa       60

gaact                                                                   65


<210>  35
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ARHGAP18 
       transcript-specific amplicon of assay 112476

<400>  35
cctggagc                                                                 8


<210>  36
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify ARHGAP18 subsequence, assay 
       112477

<400>  36
gcagcaacta caggctttga                                                   20


<210>  37
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify ARHGAP18 subsequence, assay 
       112477

<400>  37
ttcagtgtgt ccctgtttgc                                                   20


<210>  38
<211>  66
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ARHGAP18 transcript-specific amplicon of assay 112477

<400>  38
gcagcaacta caggctttga accttcttgt catcctccta cctgatgcaa acagggacac       60

actgaa                                                                  66


<210>  39
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the ARHGAP18 
       transcript-specific amplicon of assay 112477

<400>  39
catcctcc                                                                 8


<210>  40
<211>  505
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 205544_s_at; covers a part of the corresponding 
       human genome target sequence at the CR2 locus

<400>  40
agcccagttt cactgccata tactcttcaa ggactttctg aagcctcact tatgagatgc       60

ctgaagccag gccatggcta taaacaatta catggctcta aaaagttttg ccctttttaa      120

ggaaggcact aaaaagagct gtcctggtat ctagacccat cttctttttg aaatcagcat      180

actcaatgtt actatctgct tttggttata atgtgttttt aattatctaa agtatgaagc      240

attttctggg gttatgatgg ccttaccttt attaggaagt atggttttat tttgatagta      300

gcttcctcct ctggtggtgt taatcatttc atttttaccc ttactgtttg agtttctctc      360

acattactgt atatactttg cctttccata atcactcagt gattgcaatt tgcacaagtt      420

tttttaaatt atgggaatca agatttaatc ctagagattt ggtgtacaat tcaggctttg      480

gatgtttctt tagcagtttt gtgat                                            505


<210>  41
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CR2 subsequence, assay 112478

<400>  41
ggactttctg aagcctcact tatg                                              24


<210>  42
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CR2 subsequence, assay 112478

<400>  42
ttagagccat gtaattgttt atagcc                                            26


<210>  43
<211>  71
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CR2 transcript-specific amplicon of assay 112478

<400>  43
ggactttctg aagcctcact tatgagatgc ctgaagccag gccatggcta taaacaatta       60

catggctcta a                                                            71


<210>  44
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CR2 
       transcript-specific amplicon of assay 112478

<400>  44
cttcaggc                                                                 8


<210>  45
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CR2 subsequence, assay 112479

<400>  45
tggccttacc tttattagga agtatg                                            26


<210>  46
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CR2 subsequence, assay 112479

<400>  46
aaaatgaaat gattaacacc acca                                              24


<210>  47
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CR2 transcript-specific amplicon of assay 112479

<400>  47
tggccttacc tttattagga agtatggttt tattttgata gtagcttcct cctctggtgg       60

tgttaatcat ttcatttt                                                     78


<210>  48
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CR2 
       transcript-specific amplicon of assay 112479

<400>  48
cttcctcc                                                                 8


<210>  49
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CR2 subsequence, assay 112480

<400>  49
gggttatgat ggccttacct tta                                               23


<210>  50
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CR2 subsequence, assay 112480

<400>  50
ggtaaaaatg aaatgattaa caccac                                            26


<210>  51
<211>  91
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CR2 transcript-specific amplicon of assay 112479

<400>  51
gggttatgat ggccttacct ttattaggaa gtatggtttt attttgatag tagcttcctc       60

ctctggtggt gttaatcatt tcatttttac c                                      91


<210>  52
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CR2 
       transcript-specific amplicon of assay 112480

<400>  52
tcctcctc                                                                 8


<210>  53
<211>  514
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 207038_at; covers a part of the corresponding human
       genome target sequence at the SLC16A6 locus

<400>  53
gagccatcgt gggaagactt tacaggacat acctgaagac tttctggaaa tggatcttgc       60

aaaaaatgag cacagagttc acgtgcaaat ggagccggta tgacacactt tcttacaaca      120

acagccactg tgttggctgg agagggatgg ggtgggccca acggggacac aaggaggcag      180

aggagctaac ccctctactc cactttcaaa actacatttt aaagggaatg tgtatgtgaa      240

gagcactacc aacatcgctt ttgttttgtt ttgttttgtt ttaagctttt tttttttgct      300

tgtttttaaa gccaaaacaa aaaacaacca agcactcttc catatataaa tctggctgta      360

ttcagtagca atacaagaga tatgtagaaa gactctttgg ttcacattcc gatattaaaa      420

tagtgacatg aactggcaaa gtggttttaa aagctttcac gtgggataaa tgattttctt      480

tttttctttt ctttcttcct atggtcttgt ctga                                  514


<210>  54
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify SLC16A6 subsequence, assay 
       112481

<400>  54
cactttctta caacaacagc cact                                              24


<210>  55
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify SLC16A6 subsequence, assay 
       112481

<400>  55
cctctgcctc cttgtgtcc                                                    19


<210>  56
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SLC16A6 transcript-specific amplicon of assay 112481

<400>  56
cactttctta caacaacagc cactgtgttg gctggagagg gatggggtgg gcccaacggg       60

gacacaagga ggcagagg                                                     78


<210>  57
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the SLC16A6 
       transcript-specific amplicon of assay 112481

<400>  57
ctccagcc                                                                 8


<210>  58
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify SLC16A6 subsequence, assay 
       112482

<400>  58
gttggctgga gagggatg                                                     18


<210>  59
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify SLC16A6 subsequence, assay 
       112482

<400>  59
aagtggagta gaggggttag ctc                                               23


<210>  60
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SLC16A6 transcript-specific amplicon of assay 112482

<400>  60
gttggctgga gagggatggg gtgggcccaa cggggacaca aggaggcaga ggagctaacc       60

cctctactcc actt                                                         74


<210>  61
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the SLC16A6 
       transcript-specific amplicon of assay 112482

<400>  61
ctgcctcc                                                                 8


<210>  62
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify SLC16A6 subsequence, assay 
       112482

<400>  62
gttggctgga gagggatg                                                     18


<210>  63
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify SLC16A6 subsequence, assay 
       112483

<400>  63
gaaagtggag tagaggggtt agc                                               23


<210>  64
<211>  76
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SLC16A6 transcript-specific amplicon of assay 112483

<400>  64
gttggctgga gagggatggg gtgggcccaa cggggacaca aggaggcaga ggagctaacc       60

cctctactcc actttc                                                       76


<210>  65
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the SLC16A6 
       transcript-specific amplicon of assay 112483

<400>  65
ctctgcct                                                                 8


<210>  66
<211>  511
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 224568_x_at; covers a part of the corresponding 
       human genome target sequence at the MALAT1 locus

<400>  66
gagcagttct cacgttgagg tctgtggaag agatgtccat tggagaaatg gctggtagtt       60

actctttttt ccccccaccc ccttaatcag actttaaaag tgcttaaccc cttaaacttg      120

ttatttttta cttgaagcat tttgggatgg tcttaacagg gaagagagag ggtgggggag      180

aaaatgtttt tttctaagat tttccacaga tgctatagta ctattgacaa actgggttag      240

agaaggagtg taccgctgtg ctgttggcac gaacaccttc agggactgga gctgctttta      300

tccttggaag agtattccca gttgaagctg aaaagtacag cacagtgcag ctttggttca      360

tattcagtca tctcaggaga acttcagaag agcttgagta ggccaaatgt tgaagttaag      420

ttttccaata atgtgacttc ttaaaagttt tattaaaggg gaggggcaaa tattggcaat      480

tagttggcag tggcctgtta cggttgggat t                                     511


<210>  67
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112484

<400>  67
gggactggag ctgcttttat c                                                 21


<210>  68
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112484

<400>  68
gctgcactgt gctgtacttt tc                                                22


<210>  69
<211>  70
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112484

<400>  69
gggactggag ctgcttttat ccttggaaga gtattcccag ttgaagctga aaagtacagc       60

acagtgcagc                                                              70


<210>  70
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112484

<400>  70
ttcccagt                                                                 8


<210>  71
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112485

<400>  71
tgcagctttg gttcatattc a                                                 21


<210>  72
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112485

<400>  72
caacatttgg cctactcaag c                                                 21


<210>  73
<211>  67
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112485

<400>  73
tgcagctttg gttcatattc agtcatctca ggagaacttc agaagagctt gagtaggcca       60

aatgttg                                                                 67


<210>  74
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112485

<400>  74
ttctcctg                                                                 8


<210>  75
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112486

<400>  75
tgaagcattt tgggatggtc                                                   20


<210>  76
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112486

<400>  76
gcatctgtgg aaaatcttag aaaaa                                             25


<210>  77
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112486

<400>  77
tgaagcattt tgggatggtc ttaacaggga agagagaggg tgggggagaa aatgtttttt       60

tctaagattt tccacagatg c                                                 81


<210>  78
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112486

<400>  78
ctcttccc                                                                 8


<210>  79
<211>  551
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 223940_x_at; covers a part of the corresponding 
       human genome target sequence at the MALAT1 locus

<400>  79
gtgcagcttt ggttcatatt cagtcatctc aggagaactt cagaagagct tgagtaggcc       60

aaatgttgaa gttaagtttt ccaataatgt gacttcttaa aagttttatt aaaggggagg      120

ggcaaatatt ggcaattagt tggcagtggc ctgttacggt tgggattggt ggggtgggtt      180

taggtaattg tttagtttat gattgcagat aaactcatgc cagagaactt aaagtcttag      240

aatggaaaaa gtaaagaaat atcaacttcc aagttggcaa gtaactccca atgatttagt      300

ttttttcccc ccagtttgaa ttgggaagct gggggaagtt aaatatgagc cactgggtgt      360

accagtgcat taatttgggc aaggaaagtg tcataatttg atactgtatc tgttttcctt      420

caaagtatag agcttttggg gaaggaaagt attgaactgg gggttggtct ggcctactgg      480

gctgacatta actacaatta tgggaaatgc aaaagttgtt tggatatggt agtgtgtggt      540

tctcttttgg a                                                           551


<210>  80
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112493

<400>  80
ttgaactggg ggttggtct                                                    19


<210>  81
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112493

<400>  81
ccaaacaact tttgcatttc c                                                 21


<210>  82
<211>  72
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112493

<400>  82
ttgaactggg ggttggtctg gcctactggg ctgacattaa ctacaattat gggaaatgca       60

aaagttgttt gg                                                           72


<210>  83
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112493

<400>  83
cagcccag                                                                 8


<210>  84
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112494

<400>  84
tgggcaagga aagtgtcata                                                   20


<210>  85
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112494

<400>  85
gaccaacccc cagttcaata                                                   20


<210>  86
<211>  94
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112494

<400>  86
tgggcaagga aagtgtcata atttgatact gtatctgttt tccttcaaag tatagagctt       60

ttggggaagg aaagtattga actgggggtt ggtc                                   94


<210>  87
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112494

<400>  87
cttcccca                                                                 8


<210>  88
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify MALAT1 subsequence, assay 112495

<400>  88
tgcagctttg gttcatattc a                                                 21


<210>  89
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify MALAT1 subsequence, assay 
       112495

<400>  89
caacatttgg cctactcaag c                                                 21


<210>  90
<211>  67
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MALAT1 transcript-specific amplicon of assay 112495

<400>  90
tgcagctttg gttcatattc agtcatctca ggagaacttc agaagagctt gagtaggcca       60

aatgttg                                                                 67


<210>  91
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the MALAT1 
       transcript-specific amplicon of assay 112495

<400>  91
ttctcctg                                                                 8


<210>  92
<211>  449
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 1569263_at; covers a part of the corresponding 
       human genome target sequence at the CSNK1D locus

<400>  92
gagacactcc ctatatggta cagcccctca acaagacggc cgccggcctc tcactgacaa       60

gccatccccc gcacaccaca ctcagcgaac gtgctggcag tgcgacttac aaatttgagc      120

atgttccagt cgaacacgta gtcataggag aagccctggc gatggaacag attccggaaa      180

agctgccgca ggtacgagta gtcaggcttg tcgtcaaaac gcaaggaacg gcagaaattc      240

aggtatgtgg caaattcggc tacaaaacaa gaaactcaaa gctaactcat gaaacccaac      300

tgcgactcaa ggtgtctctg ccaacgtcgc tgtctacctc ctgctgctgc acactcaagg      360

ggagaaggac agatgcaaaa cacctgtcag atttctaaga cctgaagcct tgagaaagca      420

tcgaaaagta ttcaagtcac ggccgggtg                                        449


<210>  93
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CSNK1D subsequence, assay 112487

<400>  93
acgtcgctgt ctacctcctg                                                   20


<210>  94
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CSNK1D subsequence, assay 
       112487

<400>  94
gctttctcaa ggcttcaggt c                                                 21


<210>  95
<211>  96
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CSNK1D transcript-specific amplicon of assay 112487

<400>  95
acgtcgctgt ctacctcctg ctgctgcaca ctcaagggga gaaggacaga tgcaaaacac       60

ctgtcagatt tctaagacct gaagccttga gaaagc                                 96


<210>  96
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CSNK1D 
       transcript-specific amplicon of assay 112487

<400>  96
cttctccc                                                                 8


<210>  97
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CSNK1D subsequence, assay 112488

<400>  97
atgaaaccca actgcgactc                                                   20


<210>  98
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CSNK1D subsequence, assay 
       112488

<400>  98
agcagcagga ggtagacagc                                                   20


<210>  99
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CSNK1D transcript-specific amplicon of assay 112488

<400>  99
atgaaaccca actgcgactc aaggtgtctc tgccaacgtc gctgtctacc tcctgctgct       60


<210>  100
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CSNK1D 
       transcript-specific amplicon of assay 112488

<400>  100
ctctgcca                                                                 8


<210>  101
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CSNK1D subsequence, assay 112489

<400>  101
acgtcgctgt ctacctcctg                                                   20


<210>  102
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CSNK1D subsequence, assay 
       112489

<400>  102
aatctgacag gtgttttgca tc                                                22


<210>  103
<211>  70
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CSNK1D transcript-specific amplicon of assay 112489

<400>  103
acgtcgctgt ctacctcctg ctgctgcaca ctcaagggga gaaggacaga tgcaaaacac       60

ctgtcagatt                                                              70


<210>  104
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CSNK1D 
       transcript-specific amplicon of assay 112489

<400>  104
ccttctcc                                                                 8


<210>  105
<211>  370
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 230213_at; covers a part of the corresponding human
       genome target sequence at the C19orf43 locus


<220>
<221>  misc_feature
<222>  (77)..(77)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (115)..(115)
<223>  n is a, c, g, or t

<400>  105
ttgtcagaac tgcgggaggg ggtgctagtg acatctatgg gtagaggcca gggatgctgc       60

tcaacttcct accatgngtg gggcagcgcc ctcccacccc caaacaaaga ataanccagc      120

tcaaaatgtt attagtgcca ggttgagaaa ctctggatta agtaaatagg gcatatattg      180

atttttggct ctgagcttgc catgtctgtg gtgttaagat caagtccctg tagtgtggag      240

gaaaaagtgt tgagaataac aagactgggg gctctagttc tggatccagc atgtgatttt      300

gggcaaatga tctaacctct gcaagcctca gtttcttcat ttgttaaaaa tgggcgtggg      360

ttgggtgcag                                                             370


<210>  106
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify C19orf43 subsequence, assay 
       112490

<400>  106
ccaggttgag aaactctgga tt                                                22


<210>  107
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify C19orf43 subsequence, assay 
       112490

<400>  107
cctccacact acagggactt g                                                 21


<210>  108
<211>  104
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C19orf43 transcript-specific amplicon of assay 112490

<400>  108
ccaggttgag aaactctgga ttaagtaaat agggcatata ttgatttttg gctctgagct       60

tgccatgtct gtggtgttaa gatcaagtcc ctgtagtgtg gagg                       104


<210>  109
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the C19orf43 
       transcript-specific amplicon of assay 112490

<400>  109
tggctctg                                                                 8


<210>  110
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify C19orf43 subsequence, assay 
       112491

<400>  110
tgctgctcaa cttcctacca                                                   20


<210>  111
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify C19orf43 subsequence, assay 
       112491

<400>  111
tctcaacctg gcactaataa catt                                              24


<210>  112
<211>  94
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C19orf43 transcript-specific amplicon of assay 112491


<220>
<221>  misc_feature
<222>  (23)..(23)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (61)..(61)
<223>  n is a, c, g, or t

<400>  112
tgctgctcaa cttcctacca tgngtggggc agcgccctcc cacccccaaa caaagaataa       60

nccagctcaa aatgttatta gtgccaggtt gaga                                   94


<210>  113
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the C19orf43 
       transcript-specific amplicon of assay 112491

<400>  113
ctgcccca                                                                 8


<210>  114
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify C19orf43 subsequence, assay 
       112492

<400>  114
tctcaacctg gcactaataa catt                                              24


<210>  115
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify C19orf43 subsequence, assay 
       112492

<400>  115
tctcaacctg gcactaataa catt                                              24


<210>  116
<211>  130
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C19orf43 transcript-specific amplicon of assay 112492


<220>
<221>  misc_feature
<222>  (59)..(59)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (97)..(97)
<223>  n is a, c, g, or t

<400>  116
ggggtgctag tgacatctat gggtagaggc cagggatgct gctcaacttc ctaccatgng       60

tggggcagcg ccctcccacc cccaaacaaa gaataancca gctcaaaatg ttattagtgc      120

caggttgaga                                                             130


<210>  117
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the C19orf43 
       transcript-specific amplicon of assay 112492

<400>  117
cagcatcc                                                                 8


<210>  118
<211>  345
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 209583_s_at; covers a part of the corresponding 
       human genome target sequence at the CD200 locus

<400>  118
agtcttagac aatagctcac attttttgag aagcatgcct tccctgtcca tttgtcttat       60

aacatgaccc agccctattt tacgtcattc taaattcagc ctcatataat gaaaatacat      120

tatgaaaaca gatgttagga gatttcctgt atagcagtca gccaattcat atgctttgtc      180

tctgctggct tcttcttcca tgcgttaact tttcccaata gcagaggagg caaatatgag      240

catacaatcc ctttgttcta aagatattgt tccagctagt ggaatgatgt tgaatcttta      300

ataaccataa ttagttgctt tttcagtatc ttctgctttg tctgt                      345


<210>  119
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CD200 subsequence, assay 112496

<400>  119
ccttccctgt ccatttgtct t                                                 21


<210>  120
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CD200 subsequence, assay 112496

<400>  120
tgaggctgaa tttagaatga cg                                                22


<210>  121
<211>  67
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CD200 transcript-specific amplicon of assay 112496

<400>  121
ccttccctgt ccatttgtct tataacatga cccagcccta ttttacgtca ttctaaattc       60

agcctca                                                                 67


<210>  122
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CD200 
       transcript-specific amplicon of assay 112496

<400>  122
cccagccc                                                                 8


<210>  123
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify CD200 subsequence, assay 112497

<400>  123
tcttccatgc gttaactttt cc                                                22


<210>  124
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify CD200 subsequence, assay 112497

<400>  124
gaacaaaggg attgtatgct ca                                                22


<210>  125
<211>  65
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CD200 transcript-specific amplicon of assay 112497

<400>  125
tcttccatgc gttaactttt cccaatagca gaggaggcaa atatgagcat acaatccctt       60

tgttc                                                                   65


<210>  126
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the CD200 
       transcript-specific amplicon of assay 112497

<400>  126
cagaggag                                                                 8


<210>  127
<211>  541
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Affymetrix ID 209841_s_at; covers a part of the corresponding 
       human genome target sequence at the LRRN3 locus

<400>  127
caaatatgtc ctaaaaacca ccaaggaaac ctactccaaa aatgaacaaa aaaaaaaaaa       60

agcgaaagac tgcagttgtg ctaaaaacaa aacaaaacaa acaaacaaac aaaaaagtaa      120

aaaaagatta ctttcgagag agaagtttaa gcttcaccaa tgctgctcct gaccaatgga      180

aatatgtaca acttcagcat tttaagtaac tggcttcaag gggtactgtg gcaaccaaat      240

aaaataactc cattttctaa aactttcatg taacttttat gtctggacta cagttcaagt      300

ggacaaaaac atttctgtat tttttttaag taaataagag tagttgaact gagcaatacc      360

tcctcctgtg ttgtattaca catattagcc acgagttttt gcagtgacca gataaacttg      420

aattgacacg tggtgtaata aaatggacaa attctgtaga gtagacacag tgagtatgtg      480

gacctctttt ataaggaaaa atacattttg gattaaaatc aattgcttct gtcttgtttt      540

g                                                                      541


<210>  128
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify LRRN3 subsequence, assay 35761

<400>  128
caaaacaaaa caaacaaaca aaca                                              24


<210>  129
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify LRRN3 subsequence, assay 35761

<400>  129
gctgaagttg tacatatttc cattg                                             25


<210>  130
<211>  111
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LRRN3 transcript-specific amplicon of assay 35761

<400>  130
caaaacaaaa caaacaaaca aacaaaaaag taaaaaaaga ttactttcga gagagaagtt       60

taagcttcac caatgctgct cctgaccaat ggaaatatgt acaacttcag c               111


<210>  131
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the LRRN3 
       transcript-specific amplicon of assay 35761

<400>  131
aggagcag                                                                 8


<210>  132
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  forward (left) primer to amplify LRRN3 subsequence, assay 35762

<400>  132
caaaacaaaa caaacaaaca aaca                                              24


<210>  133
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse (right) primer to amplify LRRN3 subsequence, assay 35762

<400>  133
gctgaagttg tacatatttc cattg                                             25


<210>  134
<211>  111
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LRRN3 transcript-specific amplicon of assay 35762

<400>  134
caaaacaaaa caaacaaaca aacaaaaaag taaaaaaaga ttactttcga gagagaagtt       60

taagcttcac caatgctgct cctgaccaat ggaaatatgt acaacttcag c               111


<210>  135
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  hydrolysis probe (UPL) for RT-PCR detection of the LRRN3 
       transcript-specific amplicon of assay 35762

<400>  135
tgctgctc                                                                 8


