                         SEQUENCE LISTING

<110>  Sthl, Patrik
       Lundeberg, Joakim
       Frisen, Jonas
 
<120>  Method and product for localised or spatial detection of nucleic 
       acid in a tissue sample

<130>  27.20.107863/01

<150>  GB1106254.4
<151>  2011-04-13

<160>  121   

<170>  PatentIn version 3.5

<210>  1
<211>  72
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAP-ID1


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5'-terminus amino linker with a C6 spacer

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is a, c, g, t or u

<400>  1
uuaagtacaa atctcgactg ccactctgaa ccttctcctt ctccttcacc tttttttttt       60

tttttttttt vn                                                           72


<210>  2
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enzymatic recognition sequence

<400>  2
uuaagtacaa                                                              10


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal amplification handle P

<400>  3
atctcgactg ccactctgaa                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID1

<400>  4
ccttctcctt ctccttcacc                                                   20


<210>  5
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Capture sequence


<220>
<221>  misc_feature
<222>  (22)..(22)
<223>  n is a, c, g, or t

<400>  5
tttttttttt tttttttttt vn                                                22


<210>  6
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID1

<400>  6
ccttctcctt ctccttcacc                                                   20


<210>  7
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID2

<400>  7
ccttgctgct tctcctcctc                                                   20


<210>  8
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID3

<400>  8
acctcctccg cctcctcctc                                                   20


<210>  9
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID4

<400>  9
gagacatacc accaagagac                                                   20


<210>  10
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID5

<400>  10
gtcctctatt ccgtcaccat                                                   20


<210>  11
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID6

<400>  11
gactgagctc gaacatatgg                                                   20


<210>  12
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID7

<400>  12
tggaggattg acacagaacg                                                   20


<210>  13
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID8

<400>  13
ccagcctctc cattacatcg                                                   20


<210>  14
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID9

<400>  14
aagatctacc agccagccag                                                   20


<210>  15
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID10

<400>  15
cgaacttcca ctgtctcctc                                                   20


<210>  16
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID11

<400>  16
ttgcgccttc tccaatacac                                                   20


<210>  17
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID12

<400>  17
ctcttcttag catgccacct                                                   20


<210>  18
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID13

<400>  18
accacttctg cattacctcc                                                   20


<210>  19
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID14

<400>  19
acagcctcct cttcttcctt                                                   20


<210>  20
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID15

<400>  20
aatcctctcc ttgccagttc                                                   20


<210>  21
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID16

<400>  21
gatgcctcca cctgtagaac                                                   20


<210>  22
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID17

<400>  22
gaaggaatgg aggatatcgc                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID18

<400>  23
gatccaagga ccatcgactg                                                   20


<210>  24
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID19

<400>  24
ccactggaac ctgacaaccg                                                   20


<210>  25
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID20

<400>  25
ctgcttcttc ctggaactca                                                   20


<210>  26
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Free 5' surface probe - A


<220>
<221>  misc_feature
<222>  (66)..(66)
<223>  3'-terminus amino linker with a C7 spacer

<400>  26
gcgttcagag tggcagtcga gatcacgcgg caatcatatc ggacagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  27
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Free 5' surface probe - U


<220>
<221>  misc_feature
<222>  (66)..(66)
<223>  3'-terminus amino linker with a C7 spacer

<400>  27
gcgttcagag tggcagtcga gatcacgcgg caatcatatc ggacggctgc tggtaaatag       60

agatca                                                                  66


<210>  28
<211>  23
<212>  DNA
<213>  Artificial sequence

<220>
<223>  LP'

<400>  28
ttcagagtgg cagtcgagat cac                                               23


<210>  29
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID'

<400>  29
gcggcaatca tatcggac                                                     18


<210>  30
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  A' 22bp MutY mismatch

<400>  30
agatcggaag agcgtagtgt ag                                                22


<210>  31
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  U' 22bp MutY mismatch

<400>  31
ggctgctggt aaatagagat ca                                                22


<210>  32
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Illumina amplification handle A

<400>  32
acactctttc cctacacgac gctcttccga tct                                    33


<210>  33
<211>  35
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Universal amplification handle U

<400>  33
aagtgtggaa agttgatcgc tatttaccag cagcc                                  35


<210>  34
<211>  45
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Capture LP Poly-dTVN


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Phosphorylated

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  n is a, c, g, or t

<400>  34
gtgatctcga ctgccactct gaattttttt tttttttttt tttvn                       45


<210>  35
<211>  47
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Capture LP Poly-d24T


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Phosphorylated

<400>  35
gtgatctcga ctgccactct gaattttttt tttttttttt ttttttt                     47


<210>  36
<211>  21
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Illumina amplification handle B

<400>  36
agacgtgtgc tcttccgatc t                                                 21


<210>  37
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Universal amplification handle X

<400>  37
acgtctgtga atagccgcat                                                   20


<210>  38
<211>  29
<212>  DNA
<213>  Artificial sequence

<220>
<223>  B R6 handle (or X)


<220>
<221>  misc_feature
<222>  (22)..(29)
<223>  n is a, c, g, or t

<400>  38
agacgtgtgc tcttccgatc tnnnnnnnn                                         29


<210>  39
<211>  31
<212>  DNA
<213>  Artificial sequence

<220>
<223>  B R8 handle (or X)


<220>
<221>  misc_feature
<222>  (22)..(31)
<223>  n is a, c, g, or t

<400>  39
agacgtgtgc tcttccgatc tnnnnnnnnn n                                      31


<210>  40
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  B polyTVN (or X)


<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  n is a, c, g, or t

<400>  40
agacgtgtgc tcttccgatc tttttttttt tttttttttt tvn                         43


<210>  41
<211>  45
<212>  DNA
<213>  Artificial sequence

<220>
<223>  B poly24T (or X)

<400>  41
agacgtgtgc tcttccgatc tttttttttt tttttttttt ttttt                       45


<210>  42
<211>  53
<212>  DNA
<213>  Artificial sequence

<220>
<223>  A P handle

<400>  42
acactctttc cctacacgac gctcttccga tctatctcga ctgccactct gaa              53


<210>  43
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Beta-2 microglobulin (B2M) primer

<400>  43
tgggggtgag aattgctaag                                                   20


<210>  44
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID-1 primer

<400>  44
ccttctcctt ctccttcacc                                                   20


<210>  45
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID-5 primer

<400>  45
gtcctctatt ccgtcaccat                                                   20


<210>  46
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  ID-20 primer

<400>  46
ctgcttcttc ctggaactca                                                   20


<210>  47
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Forward - Genomic DNA Human primer

<400>  47
gactgctctt ttcacccatc                                                   20


<210>  48
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Reverse - Genomic DNA Human primer

<400>  48
ggagctgctg gtgcaggg                                                     18


<210>  49
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  P - label specific primer

<400>  49
atctcgactg ccactctgaa                                                   20


<210>  50
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 1


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  50
uuuuuacact ctttccctac acgacgctct tccgatctgt ccgatatgat tgccgctttt       60

tttttttttt ttttttvn                                                     78


<210>  51
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 2


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  51
uuuuuacact ctttccctac acgacgctct tccgatctat gagccgggtt catctttttt       60

tttttttttt ttttttvn                                                     78


<210>  52
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 3


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  52
uuuuuacact ctttccctac acgacgctct tccgatcttg aggcactctg ttgggatttt       60

tttttttttt ttttttvn                                                     78


<210>  53
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 4


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  53
uuuuuacact ctttccctac acgacgctct tccgatctat gattagtcgc cattcgtttt       60

tttttttttt ttttttvn                                                     78


<210>  54
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 5


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  54
uuuuuacact ctttccctac acgacgctct tccgatctac ttgagggtag atgttttttt       60

tttttttttt ttttttvn                                                     78


<210>  55
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 6


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  55
uuuuuacact ctttccctac acgacgctct tccgatctat ggccaatact gttatctttt       60

tttttttttt ttttttvn                                                     78


<210>  56
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 7


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  56
uuuuuacact ctttccctac acgacgctct tccgatctcg ctaccctgat tcgacctttt       60

tttttttttt ttttttvn                                                     78


<210>  57
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 8


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  57
uuuuuacact ctttccctac acgacgctct tccgatctgc ccactttcgc cgtagttttt       60

tttttttttt ttttttvn                                                     78


<210>  58
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 9


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  58
uuuuuacact ctttccctac acgacgctct tccgatctag caactttgag caagattttt       60

tttttttttt ttttttvn                                                     78


<210>  59
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 10


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  59
uuuuuacact ctttccctac acgacgctct tccgatctgc caattcggaa ttccggtttt       60

tttttttttt ttttttvn                                                     78


<210>  60
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 11


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  60
uuuuuacact ctttccctac acgacgctct tccgatcttc gcccaaggta atacattttt       60

tttttttttt ttttttvn                                                     78


<210>  61
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 12


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  61
uuuuuacact ctttccctac acgacgctct tccgatcttc gcatttccta ttcgagtttt       60

tttttttttt ttttttvn                                                     78


<210>  62
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 13


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  62
uuuuuacact ctttccctac acgacgctct tccgatcttt gctaaatcta accgcctttt       60

tttttttttt ttttttvn                                                     78


<210>  63
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 14


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  63
uuuuuacact ctttccctac acgacgctct tccgatctgg aattaaattc tgatggtttt       60

tttttttttt ttttttvn                                                     78


<210>  64
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 15


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  64
uuuuuacact ctttccctac acgacgctct tccgatctca ttacataggt gctaagtttt       60

tttttttttt ttttttvn                                                     78


<210>  65
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 16


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  65
uuuuuacact ctttccctac acgacgctct tccgatctat tgacttgcgc tcgcactttt       60

tttttttttt ttttttvn                                                     78


<210>  66
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 17


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  66
uuuuuacact ctttccctac acgacgctct tccgatctat agtatctccc aagttctttt       60

tttttttttt ttttttvn                                                     78


<210>  67
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 18


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  67
uuuuuacact ctttccctac acgacgctct tccgatctgt gcgcctgtaa tccgcatttt       60

tttttttttt ttttttvn                                                     78


<210>  68
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 19


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  68
uuuuuacact ctttccctac acgacgctct tccgatctgc gccactcttt aggtagtttt       60

tttttttttt ttttttvn                                                     78


<210>  69
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 20


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  69
uuuuuacact ctttccctac acgacgctct tccgatctta tgcaagtgat tggctttttt       60

tttttttttt ttttttvn                                                     78


<210>  70
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 21


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  70
uuuuuacact ctttccctac acgacgctct tccgatctcc aagccacgtt tatacgtttt       60

tttttttttt ttttttvn                                                     78


<210>  71
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 22


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  71
uuuuuacact ctttccctac acgacgctct tccgatctac ctgattgctg tataactttt       60

tttttttttt ttttttvn                                                     78


<210>  72
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 23


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  72
uuuuuacact ctttccctac acgacgctct tccgatctca gcgcatctat cctctatttt       60

tttttttttt ttttttvn                                                     78


<210>  73
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 24


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  73
uuuuuacact ctttccctac acgacgctct tccgatcttc cacgcgtagg actagttttt       60

tttttttttt ttttttvn                                                     78


<210>  74
<211>  78
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 25


<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n is a, c, g, t or u

<400>  74
uuuuuacact ctttccctac acgacgctct tccgatctcg actaagtatg tagcgctttt       60

tttttttttt ttttttvn                                                     78


<210>  75
<211>  30
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Frame probe - Layout 1

<400>  75
aaatttcgtc tgctatcgcg cttctgtacc                                        30


<210>  76
<211>  21
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Fluorescent marker probe PS 1


<220>
<221>  misc_feature
<222>  (21)..(21)
<223>  Coupled to cyanine 3 fluorescent dye

<400>  76
ggtacagaag cgcgatagca g                                                 21


<210>  77
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second strand synthesis and first PCR amplification handle - A 
       primer

<400>  77
acactctttc cctacacgac gctcttccga tct                                    33


<210>  78
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second strand synthesis and first PCR amplification handle - B 
       dt20VN primer


<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  n is a, c, g, or t

<400>  78
agacgtgtgc tcttccgatc tttttttttt tttttttttt tvn                         43


<210>  79
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Custom sequencing primer B r2

<400>  79
tcagacgtgt gctcttccga tctttttttt tttttttttt ttt                         43


<210>  80
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 1

<400>  80
gcgttcagag tggcagtcga gatcacgcgg caatcatatc ggacagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  81
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 2

<400>  81
gcgttcagag tggcagtcga gatcacaaga tgaacccggc tcatagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  82
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 3

<400>  82
gcgttcagag tggcagtcga gatcactccc aacagagtgc ctcaagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  83
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 4

<400>  83
gcgttcagag tggcagtcga gatcaccgaa tggcgactaa tcatagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  84
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 5

<400>  84
gcgttcagag tggcagtcga gatcacaaac atctaccctc aagtagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  85
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 6

<400>  85
gcgttcagag tggcagtcga gatcacgata acagtattgg ccatagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  86
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 7

<400>  86
gcgttcagag tggcagtcga gatcacggtc gaatcagggt agcgagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  87
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 8

<400>  87
gcgttcagag tggcagtcga gatcacacta cggcgaaagt gggcagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  88
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 9

<400>  88
gcgttcagag tggcagtcga gatcacatct tgctcaaagt tgctagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  89
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 10

<400>  89
gcgttcagag tggcagtcga gatcacccgg aattccgaat tggcagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  90
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 11

<400>  90
gcgttcagag tggcagtcga gatcacatgt attaccttgg gcgaagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  91
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 12

<400>  91
gcgttcagag tggcagtcga gatcacctcg aataggaaat gcgaagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  92
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 13

<400>  92
gcgttcagag tggcagtcga gatcacggcg gttagattta gcaaagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  93
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 14

<400>  93
gcgttcagag tggcagtcga gatcacccat cagaatttaa ttccagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  94
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 15

<400>  94
gcgttcagag tggcagtcga gatcacctta gcacctatgt aatgagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  95
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 16

<400>  95
gcgttcagag tggcagtcga gatcacgtgc gagcgcaagt caatagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  96
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 17

<400>  96
gcgttcagag tggcagtcga gatcacgaac ttgggagata ctatagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  97
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 18

<400>  97
gcgttcagag tggcagtcga gatcactgcg gattacaggc gcacagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  98
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 19

<400>  98
gcgttcagag tggcagtcga gatcacctac ctaaagagtg gcgcagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  99
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 20

<400>  99
gcgttcagag tggcagtcga gatcacaagc caatcacttg cataagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  100
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 21

<400>  100
gcgttcagag tggcagtcga gatcaccgta taaacgtggc ttggagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  101
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 22

<400>  101
gcgttcagag tggcagtcga gatcacgtta tacagcaatc aggtagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  102
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 23

<400>  102
gcgttcagag tggcagtcga gatcactaga ggatagatgc gctgagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  103
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 24

<400>  103
gcgttcagag tggcagtcga gatcacacta gtcctacgcg tggaagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  104
<211>  66
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Probe 25

<400>  104
gcgttcagag tggcagtcga gatcacgcgc tacatactta gtcgagatcg gaagagcgta       60

gtgtag                                                                  66


<210>  105
<211>  30
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Frame probe - layout 1

<400>  105
aaatttcgtc tgctatcgcg cttctgtacc                                        30


<210>  106
<211>  45
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Capture probe - LP poly-dTVN


<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  n is a, c, g, or t

<400>  106
gtgatctcga ctgccactct gaattttttt tttttttttt tttvn                       45


<210>  107
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Amplification handle probe A-handle

<400>  107
acactctttc cctacacgac gctcttccga tct                                    33


<210>  108
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second strand synthesis and first PCR amplification handle - A 
       primer

<400>  108
acactctttc cctacacgac gctcttccga tct                                    33


<210>  109
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second strand synthesis and first PCR amplification handle - B 
       dt20VN primer


<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  n is a, c, g, or t

<400>  109
agacgtgtgc tcttccgatc tttttttttt tttttttttt tvn                         43


<210>  110
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second PCR - A primer

<400>  110
acactctttc cctacacgac gctcttccga tct                                    33


<210>  111
<211>  34
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Second PCR - B primer

<400>  111
gtgactggag ttcagacgtg tgctcttccg atct                                   34


<210>  112
<211>  39
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Template Switching primer - longB


<220>
<221>  misc_feature
<222>  (37)..(39)
<223>  Ribonucleotides

<400>  112
gtgactggag ttcagacgtg tgctcttccg atctatggg                              39


<210>  113
<211>  33
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - A primer

<400>  113
acactctttc cctacacgac gctcttccga tct                                    33


<210>  114
<211>  39
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B A431 Chr2+2 FW A

<400>  114
agacgtgtgc tcttccgatc ttggctgcct gaggcaatg                              39


<210>  115
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B A431 Chr2+2 RE A

<400>  115
agacgtgtgc tcttccgatc tctcgctaac aagcagagag aac                         43


<210>  116
<211>  40
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B A431 Chr3+7 FW B

<400>  116
agacgtgtgc tcttccgatc ttgagaacaa gggggaagag                             40


<210>  117
<211>  41
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B A431 Chr3+7 RE B

<400>  117
agacgtgtgc tcttccgatc tcggtgaaac aagcaggtaa c                           41


<210>  118
<211>  41
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B NT 1 FW

<400>  118
agacgtgtgc tcttccgatc tcattcccac actcatcaca c                           41


<210>  119
<211>  40
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B NT 1 RE

<400>  119
agacgtgtgc tcttccgatc ttcacactgg agaaagaccc                             40


<210>  120
<211>  43
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B NT 2 FW

<400>  120
agacgtgtgc tcttccgatc tggggttcag agtgattttt cag                         43


<210>  121
<211>  40
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Spatial genomics - B NT 2 RE

<400>  121
agacgtgtgc tcttccgatc ttccgttttc tttcagtgcc                             40


