                         SEQUENCE LISTING

<110>  Burioni, Raffaella
       Casartelli, Mario
       Scalco, Riccardo
 
<120>  A method for the analysis of the evolution of gene sequences and the  
       estimation of a prevailing virus strain

<130>  PC1109ED

<160>  2     

<170>  PatentIn version 3.3

<210>  1
<211>  329
<212>  PRT
<213>  Influenza A virus

<400>  1

Gln Lys Leu Pro Gly Asn Asp Asn Ser Thr Ala Thr Leu Cys Leu Gly 
1               5                   10                  15      


His His Ala Val Pro Asn Gly Thr Leu Val Lys Thr Ile Thr Asn Asp 
            20                  25                  30          


Gln Ile Glu Val Thr Asn Ala Thr Glu Leu Val Gln Ser Ser Ser Thr 
        35                  40                  45              


Gly Arg Ile Cys Asp Ser Pro His Arg Ile Leu Asp Gly Lys Asn Cys 
    50                  55                  60                  


Thr Leu Ile Asp Ala Leu Leu Gly Asp Pro His Cys Asp Gly Phe Gln 
65                  70                  75                  80  


Asn Lys Glu Trp Asp Leu Phe Val Glu Arg Ser Lys Ala Tyr Ser Asn 
                85                  90                  95      


Cys Tyr Pro Tyr Asp Val Pro Asp Tyr Ala Ser Leu Arg Ser Leu Val 
            100                 105                 110         


Ala Ser Ser Gly Thr Leu Glu Phe Ile Asn Glu Asp Phe Asn Trp Thr 
        115                 120                 125             


Gly Val Ala Gln Asp Gly Gly Ser Tyr Ala Cys Lys Arg Gly Ser Val 
    130                 135                 140                 


Asn Ser Phe Phe Ser Arg Leu Asn Trp Leu His Lys Leu Glu Tyr Lys 
145                 150                 155                 160 


Tyr Pro Ala Leu Asn Val Thr Met Pro Asn Ser Gly Lys Phe Asp Lys 
                165                 170                 175     


Leu Tyr Ile Trp Gly Val His His Pro Ser Thr Asp Ser Asp Gln Thr 
            180                 185                 190         


Ser Leu Tyr Val Arg Ala Ser Gly Arg Val Thr Val Ser Thr Lys Arg 
        195                 200                 205             


Ser Gln Gln Thr Val Thr Pro Asn Ile Gly Ser Arg Pro Trp Val Arg 
    210                 215                 220                 


Gly Leu Ser Ser Arg Ile Ser Ile Tyr Trp Thr Ile Val Lys Pro Gly 
225                 230                 235                 240 


Asp Ile Leu Leu Ile Asn Ser Thr Gly Asn Leu Ile Ala Pro Arg Gly 
                245                 250                 255     


Tyr Phe Lys Ile Arg Asn Gly Lys Ser Ser Ile Met Arg Ser Asp Ala 
            260                 265                 270         


Pro Ile Gly Asn Cys Ser Ser Glu Cys Ile Thr Pro Asn Gly Ser Ile 
        275                 280                 285             


Pro Asn Asp Lys Pro Phe Gln Asn Val Asn Arg Ile Thr Tyr Gly Ala 
    290                 295                 300                 


Cys Pro Arg Tyr Val Lys Gln Asn Thr Leu Lys Leu Ala Thr Gly Met 
305                 310                 315                 320 


Arg Asn Val Pro Glu Lys Gln Thr Arg 
                325                 


<210>  2
<211>  329
<212>  PRT
<213>  Influenza A virus

<400>  2

Gln Lys Leu Pro Gly Asn Asp Asn Ser Thr Ala Thr Leu Cys Leu Gly 
1               5                   10                  15      


His His Ala Val Pro Asn Gly Thr Ile Val Lys Thr Ile Thr Asn Asp 
            20                  25                  30          


Gln Ile Glu Val Thr Asn Ala Thr Glu Leu Val Gln Ser Ser Ser Thr 
        35                  40                  45              


Gly Glu Ile Cys Asp Ser Pro His Gln Ile Leu Asp Gly Lys Asn Cys 
    50                  55                  60                  


Thr Leu Ile Asp Ala Leu Leu Gly Asp Pro Gln Cys Asp Gly Phe Gln 
65                  70                  75                  80  


Asn Lys Lys Trp Asp Leu Phe Val Glu Arg Ser Lys Ala Tyr Ser Asn 
                85                  90                  95      


Cys Tyr Pro Tyr Asp Val Pro Asp Tyr Ala Ser Leu Arg Ser Leu Val 
            100                 105                 110         


Ala Ser Ser Gly Thr Leu Glu Phe Asn Asn Glu Ser Phe Asn Trp Thr 
        115                 120                 125             


Gly Val Thr Gln Asn Gly Thr Ser Ser Ala Cys Ile Arg Arg Ser Lys 
    130                 135                 140                 


Asn Ser Phe Phe Ser Arg Leu Asn Trp Leu Thr His Leu Asn Phe Lys 
145                 150                 155                 160 


Tyr Pro Ala Leu Asn Val Thr Met Pro Asn Asn Glu Gln Phe Asp Lys 
                165                 170                 175     


Leu Tyr Ile Trp Gly Val His His Pro Gly Thr Asp Lys Asp Gln Ile 
            180                 185                 190         


Phe Leu Tyr Ala Gln Ala Ser Gly Arg Ile Thr Val Ser Thr Lys Arg 
        195                 200                 205             


Ser Gln Gln Thr Ala Ile Pro Asn Ile Gly Ser Arg Pro Arg Val Arg 
    210                 215                 220                 


Asx Ile Pro Ser Arg Ile Ser Ile Tyr Trp Thr Ile Val Lys Pro Gly 
225                 230                 235                 240 


Asp Ile Leu Leu Ile Asn Ser Thr Gly Asn Leu Ile Ala Pro Arg Gly 
                245                 250                 255     


Tyr Phe Lys Ile Arg Ser Gly Lys Ser Ser Ile Met Arg Ser Asp Ala 
            260                 265                 270         


Pro Ile Gly Lys Cys Asn Ser Glu Cys Ile Thr Pro Asn Gly Ser Ile 
        275                 280                 285             


Pro Asn Asp Lys Pro Phe Gln Asn Val Asn Arg Ile Thr Tyr Gly Ala 
    290                 295                 300                 


Cys Pro Arg Tyr Val Lys Gln Asn Thr Leu Lys Leu Ala Thr Gly Met 
305                 310                 315                 320 


Arg Asn Val Pro Glu Lys Gln Thr Arg 
                325                 


