                         SEQUENCE LISTING

<110>  Thomas Jefferson University
       Arafat, Hwyda A.
       Chu, Mon-Li
 
<120>  DETECTION OF PANCREATIC DUCTAL ADENOCARCINOMA

<130>  37075-270-WO

<150>  US 61/434,132
<151>  2011-01-19

<160>  18    

<170>  PatentIn version 3.5

<210>  1
<211>  618
<212>  DNA
<213>  Homo sapiens

<400>  1
atgtcaaaaa tggtgcggct gctgatataa tatttctagt ggattcctct tggaccattg       60

gagaggaaca tttccaactt gttcgagagt ttctatatga tgttgtaaaa tccttagctg      120

tgggagaaaa tgatttccat tttgctctgg tccagttcaa cggaaaccca cataccgagt      180

tcctgttaaa tacgtatcgt actaaacaag aagtcctttc tcatatttcc aacatgtctt      240

atattggggg aaccaatcag actggaaaag gattagaata cataatgcaa agccacctca      300

ccaaggctgc tggaagccgg gccggtgacg gagtccctca ggttatcgta gtgttaactg      360

atggacactc gaaggatggc cttgctctgc cctcagcgga acttaagtct gctgatgtta      420

acgtgtttgc aattggagtt gaggatgcag atgaaggagc gttaaaagaa atagcaagtg      480

aaccgctcaa tatgcatatg ttcaacctag agaattttac ctcacttcat gacatagtag      540

gaaacttagt gtcctgtgtg cattcatccg tgagtccaga aagggctggg gacacggaaa      600

cccttaaaga catcacag                                                    618


<210>  2
<211>  603
<212>  DNA
<213>  Homo sapiens

<400>  2
cacaagactc tgctgacatt attttcctta ttgatggatc aaacaacacc ggaagtgtca       60

atttcgcagt cattctcgac ttccttgtaa atctccttga gaaactccca attggaactc      120

agcagatccg agtgggggtg gtccagttta gcgatgagcc cagaaccatg ttctccttgg      180

acacctactc caccaaggcc caggttctgg gtgcagtgaa agccctcggg tttgctggtg      240

gggagttggc caatatcggc ctcgcccttg atttcgtggt ggagaaccac ttcacccggg      300

cagggggcag ccgcgtggag gaaggggttc cccaggtgct ggtcctcata agtgccgggc      360

cttctagtga cgagattcgc tacggggtgg tagcactgaa gcaggctagc gtgttctcat      420

tcggccttgg agcccaggcc gcctccaggg cagagcttca gcacatagct accgatgaca      480

acttggtgtt tactgtcccg gaattccgta gctttgggga cctccaggag aaattactgc      540

cgtacattgt tggcgtggcc caaaggcaca ttgtcttgaa accgccaacc attgtcacac      600

aag                                                                    603


<210>  3
<211>  600
<212>  DNA
<213>  Homo sapiens

<400>  3
ttcactcaaa caaaagggat atcatctttc ttttggatgg atcagccaac gttggaaaaa       60

ccaatttccc ttatgtgcgc gactttgtaa tgaacctagt taacagcctt gatattggaa      120

atgacaatat tcgtgttggt ttagtgcaat ttagtgacac tcctgtaacg gagttctctt      180

taaacacata ccagaccaag tcagatatcc ttggtcatct gaggcagctg cagctccagg      240

gaggttcggg cctgaacaca ggctcagccc taagctatgt ctatgccaac cacttcacgg      300

aagctggcgg cagcaggatc cgtgaacacg tgccgcagct cctgcttctg ctcacagctg      360

ggcagtctga ggactcctat ttgcaagctg ccaacgcctt gacacgcgcg ggcatcctga      420

ctttttgtgt gggagctagc caggcgaata aggcagagct tgagcagatt gcttttaacc      480

caagcctggt gtatctcatg gatgatttca gctccctgcc agctttgcct cagcagctga      540

ttcagcccct aaccacatat gttagtggag gtgtggagga agtaccactc gctcagccag      600


<210>  4
<211>  206
<212>  PRT
<213>  Homo sapiens

<400>  4

Asp Val Lys Asn Gly Ala Ala Ala Asp Ile Ile Phe Leu Val Asp Ser 
1               5                   10                  15      


Ser Trp Thr Ile Gly Glu Glu His Phe Gln Leu Val Arg Glu Phe Leu 
            20                  25                  30          


Tyr Asp Val Val Lys Ser Leu Ala Val Gly Glu Asn Asp Phe His Phe 
        35                  40                  45              


Ala Leu Val Gln Phe Asn Gly Asn Pro His Thr Glu Phe Leu Leu Asn 
    50                  55                  60                  


Thr Tyr Arg Thr Lys Gln Glu Val Leu Ser His Ile Ser Asn Met Ser 
65                  70                  75                  80  


Tyr Ile Gly Gly Thr Asn Gln Thr Gly Lys Gly Leu Glu Tyr Ile Met 
                85                  90                  95      


Gln Ser His Leu Thr Lys Ala Ala Gly Ser Arg Ala Gly Asp Gly Val 
            100                 105                 110         


Pro Gln Val Ile Val Val Leu Thr Asp Gly His Ser Lys Asp Gly Leu 
        115                 120                 125             


Ala Leu Pro Ser Ala Glu Leu Lys Ser Ala Asp Val Asn Val Phe Ala 
    130                 135                 140                 


Ile Gly Val Glu Asp Ala Asp Glu Gly Ala Leu Lys Glu Ile Ala Ser 
145                 150                 155                 160 


Glu Pro Leu Asn Met His Met Phe Asn Leu Glu Asn Phe Thr Ser Leu 
                165                 170                 175     


His Asp Ile Val Gly Asn Leu Val Ser Cys Val His Ser Ser Val Ser 
            180                 185                 190         


Pro Glu Arg Ala Gly Asp Thr Glu Thr Leu Lys Asp Ile Thr 
        195                 200                 205     


<210>  5
<211>  201
<212>  PRT
<213>  Homo sapiens

<400>  5

Ala Gln Asp Ser Ala Asp Ile Ile Phe Leu Ile Asp Gly Ser Asn Asn 
1               5                   10                  15      


Thr Gly Ser Val Asn Phe Ala Val Ile Leu Asp Phe Leu Val Asn Leu 
            20                  25                  30          


Leu Glu Lys Leu Pro Ile Gly Thr Gln Gln Ile Arg Val Gly Val Val 
        35                  40                  45              


Gln Phe Ser Asp Glu Pro Arg Thr Met Phe Ser Leu Asp Thr Tyr Ser 
    50                  55                  60                  


Thr Lys Ala Gln Val Leu Gly Ala Val Lys Ala Leu Gly Phe Ala Gly 
65                  70                  75                  80  


Gly Glu Leu Ala Asn Ile Gly Leu Ala Leu Asp Phe Val Val Glu Asn 
                85                  90                  95      


His Phe Thr Arg Ala Gly Gly Ser Arg Val Glu Glu Gly Val Pro Gln 
            100                 105                 110         


Val Leu Val Leu Ile Ser Ala Gly Pro Ser Ser Asp Glu Ile Arg Tyr 
        115                 120                 125             


Gly Val Val Ala Leu Lys Gln Ala Ser Val Phe Ser Phe Gly Leu Gly 
    130                 135                 140                 


Ala Gln Ala Ala Ser Arg Ala Glu Leu Gln His Ile Ala Thr Asp Asp 
145                 150                 155                 160 


Asn Leu Val Phe Thr Val Pro Glu Phe Arg Ser Phe Gly Asp Leu Gln 
                165                 170                 175     


Glu Lys Leu Leu Pro Tyr Ile Val Gly Val Ala Gln Arg His Ile Val 
            180                 185                 190         


Leu Lys Pro Pro Thr Ile Val Thr Gln 
        195                 200     


<210>  6
<211>  200
<212>  PRT
<213>  Homo sapiens

<400>  6

Val His Ser Asn Lys Arg Asp Ile Ile Phe Leu Leu Asp Gly Ser Ala 
1               5                   10                  15      


Asn Val Gly Lys Thr Asn Phe Pro Tyr Val Arg Asp Phe Val Met Asn 
            20                  25                  30          


Leu Val Asn Ser Leu Asp Ile Gly Asn Asp Asn Ile Arg Val Gly Leu 
        35                  40                  45              


Val Gln Phe Ser Asp Thr Pro Val Thr Glu Phe Ser Leu Asn Thr Tyr 
    50                  55                  60                  


Gln Thr Lys Ser Asp Ile Leu Gly His Leu Arg Gln Leu Gln Leu Gln 
65                  70                  75                  80  


Gly Gly Ser Gly Leu Asn Thr Gly Ser Ala Leu Ser Tyr Val Tyr Ala 
                85                  90                  95      


Asn His Phe Thr Glu Ala Gly Gly Ser Arg Ile Arg Glu His Val Pro 
            100                 105                 110         


Gln Leu Leu Leu Leu Leu Thr Ala Gly Gln Ser Glu Asp Ser Tyr Leu 
        115                 120                 125             


Gln Ala Ala Asn Ala Leu Thr Arg Ala Gly Ile Leu Thr Phe Cys Val 
    130                 135                 140                 


Gly Ala Ser Gln Ala Asn Lys Ala Glu Leu Glu Gln Ile Ala Phe Asn 
145                 150                 155                 160 


Pro Ser Leu Val Tyr Leu Met Asp Asp Phe Ser Ser Leu Pro Ala Leu 
                165                 170                 175     


Pro Gln Gln Leu Ile Gln Pro Leu Thr Thr Tyr Val Ser Gly Gly Val 
            180                 185                 190         


Glu Glu Val Pro Leu Ala Gln Pro 
        195                 200 


<210>  7
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human GAPDH 3'-untranslated region

<400>  7
tgaaggtcgg agtcaacgga tttggt                                            26


<210>  8
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human GAPDH 3'-untranslated region

<400>  8
catgtgggcc atgaggtcca ccac                                              24


<210>  9
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human COL6A3 exon 3

<400>  9
agcagcaagc agatgtcaaa                                                   20


<210>  10
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human COL6A3 exon 3

<400>  10
tttctcccac agctaaggat tt                                                22


<210>  11
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human COL6A3 exon 4

<400>  11
attgtcttga aaccgccaac                                                   20


<210>  12
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human COL6A3 exon 4

<400>  12
agcaatgaag tctcggatgg                                                   20


<210>  13
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human COL6A3 exon 6

<400>  13
tctcaggacc ctctctggaa c                                                 21


<210>  14
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human COL6A3 exon 6

<400>  14
taagggaaat tggtttttcc aa                                                22


<210>  15
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human COL6A3 exon 3

<400>  15
tcctctccaa tggtccaaga ggaa                                              24


<210>  16
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human COL6A3 exon 3

<400>  16
tcctctccaa tggtccaaga ggaa                                              24


<210>  17
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR forward primer for amplification of 
       human COL6A3 exon 4

<400>  17
aaggcacatt gtcttgaaac cgcc                                              24


<210>  18
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Chemically synthesized PCR reverse primer for amplification of 
       human COL6A3 exon 4

<400>  18
tccagcctct ggatgacttt agca                                              24


