                                                                               SEQUENCE LISTING

<110>  Institut Pasteur 
       Ecole Nationale Vtrinaire d'Alfort 
       Pathoquest
       Centre Hospitalier Universitaire de Montpellier     	
 
<120>  IDENTIFICATION OF A NOVEL HUMAN POLYOMAVIRUS AND 
       APPLICATIONS

<130>  B09275B_AD/CAL

<140>  PCT/EP XXXXXXX
<141>  2011-12-27

<150>  EP 10290686.4
<151>  2010-12-30

<150>  US 61/490,435
<151>  2011-05-26 


<160>  88    

<170>  PatentIn version 3.3

<210>  1
<211>  5029
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(5029)
<223>  IPPyV

<400>  1
ccccttgcct ccttctcttg ttgcaacaaa gagagaggct ttggaggctt ttccaaaact     60

cattaaggta agaagttctc cacctatttg aaacttaatt aacttgattc tcaggtagta    120

agacttattt tactttttgc agagccatgg atcaaactct gtctttggag gagagaaatg    180

agcttatgga tttgctgcaa cttacaagag cagcatgggg aaatttatct cttatgaaaa    240

aggcctacaa aacagtttcc aaaatttacc accctgataa aggtggtaat cctgagaaaa    300

tgcaaagatt aaatgaatta tttcaaaagc tgcaagttac cttgctggaa ataagaagta    360

attgtggatc ctcctcttct caggtagctt ggtacttttg ggatgagaat tttagaacac    420

taggtgcttt tctaggagaa aaatttaatc aaagaattat tggtggatat cctgattgca    480

ttacctataa taagcccagt tgttgctgca ttgtatgttt attaaagcag cagcacaaaa    540

gtacaaaaat aaataaaaaa aagccttgct tagtatgggg tgaatgcttt tgctacaagt    600

gctacttact ttggtttgga tttcctgagg attttacatc ttttaactac tggaccttat    660

taatgagaaa tatggattta agtttgctgc gcctctggac tgagcttgga ttctaatgta    720

agtatttttt tttttaggga tactacagtg attctccata ctttactgaa actccatttt    780

cctactgtga aagaaaaaat gaagatccag aaggggggtc atggggtaaa tggtggaggg    840

agtttgttaa caaagaatat gatgatttat tttgttcaga gactatatca tctagtgatg    900

atgaaaataa tcctggacct tcagcccctc caccctcttc tgcttctgcc tctgaagacc    960

ctgatcctga ggaagaagct ggatcatccc agagttcatt tacctgcacg ccccccaaaa   1020

gaaagaagcc tgaacctaat actccagagg actttcctat gtgtttgtat tcttttttaa   1080

gtcatgctat ctatagtaat aagactatga attgcttttt aatttatact acagttgaaa   1140

aaagtaagca gctttacaga actgttgaaa aatcaaaaat taaagtagat tttaaggcta   1200

ttttcttgta taaagatgat ggaattgaag gaggcctgtt atattttatt accttaggca   1260

agcatagagt ttctgctgta aaacattttt gtgttgcaca gtgtactttt agtttcattc   1320

attgtaaagc tgttattaaa cctttagagc tttatagagc tttaggtaaa ccccctttta   1380

agttgttgga agaaaacaag cctggtgtat ccatgtttga ctttcaggag gaaaaagaac   1440

aggctgtaaa ttggcaggag atttgtaatt atgcggttga agcaaaaatt actgatgtat   1500

tactgttgct tggcatctac ctagattttg cagtggaacc tggcacttgc tctaaatgtg   1560

aaaaaaagag tcataaattc cattataatt accacagtaa gcatcatgcc aatgcttgcc   1620

ttttcttgga gagtaaatcc caaaagaata tctgccaaca agcagttgac caggtccttg   1680

cagctaagag attaaagctt gtagagtgta ctagaatgga gcttttagaa gatagattta   1740

ttcaactttt tgatgaaatg gaggactttt tgcatgggga aattgaaatt ctaagatgga   1800

tgtcaggtgt ggcctggtac accattttac ttgacaactc atgggatgtt tttcaaaaaa   1860

ttttgcagct ggtaaccaca agccaaccaa aaaagaggaa catactcttt aaaggcccta   1920

taaatagtgg caaaaccacc ttagcttctg ctttcatgca cttttttgat ggtaaagctt   1980

tgaatattaa ctgcccagca gaaaaattat cttttgagtt aggctgtgct attgatcaat   2040

tttgtgtttt gcttgatgat gtgaagggcc agataacttt aaacaaaaca tcttcaacct   2100

gggcagggag ttaataattt ggataattta agagatcact tagatggtac tattaaagtt   2160

aatctggaaa aaaaacatgt gaataaaaga agccagatat ttcctcctgt aattatgaca   2220

atgaatgagt atttactccc acccacagtg ggagttagat ttgctttgca catccatttt   2280

cattgtaaga cctacctgaa gcagagttta gaaaaaagtg acttaattga aaaaagaatt   2340

cttaactctg gttacacaat cttgctgtta cttttatggt acaaccctgt tgattctttt   2400

actccaaaag tccaggaata tgttgtaaaa tggaaagaga ttttagagag acatgtatct   2460

attactcagt ttggaaatat ccagcaaaac attcttgatg gtaaagatcc cctgcatgga   2520

attgttattg aagaacaagc ataacaattt gtacttttct tcttcagatt tattcatggt   2580

tttgttaata caataaagct ttacaatgca accagcctca ttgatcattt gagcgagggg   2640

ggacagtttg attctgacaa aatttatcaa catatctatc aagatcaggg tccccgggta   2700

ggccttcagt gccctgataa attctgactt cttccacttg ccctgaagtt ccttccatgg   2760

gttgtccctg aatttgaggc ataagaccag agaacaagct attaaggaga gagcttacag   2820

gataaggatt tttaacaacc cgtttcctta gagttacatt aaaatatcta ggtaggcctc   2880

tccagttttg ggattctgaa taattagtgt gaattccaac aatatcaaca gcagacaaaa   2940

acagcttgtc ccctttacaa agaggcccca ctccattttc atccaatagc accgtggtta   3000

cagagttagt aaactgcata acaggggggg ttgtggctcc tccagtgaag ctcccatagt   3060

atcttgtatt ctcattttta gaggggtctg ggctccaaac ttctacaggg tactttccat   3120

ctttgtctag caaagcttta gcattaggat ccaaggcctg gtttactggt ttcatatttt   3180

taatagttac catatcagta ggataggtag tagtagagct agcaactagg ccttgaagtt   3240

caagaggctc tccacccact gaaaacatgt ggagagtggt accctgcact gggatagttc   3300

ctgaggatga gccatagata tatttacccc cctgatgcag atttactaga gaactaatcc   3360

ccatgacttc agtttttact gacacagcct cccacattag aagtgtgtca caggtcatgt   3420

cttcatttag catgggtagc ttaattacag ccactgagta agtagggagg gtagtagcat   3480

tagggttatc actagccttg ctggaggcaa catttatatc tgcactgtag ccatacaatt   3540

catcagtagg gttattgttt cccattcttg gatttaggta ggcctcaatt tgagttatag   3600

catctgggcc tgttctaact tctagaactt ctacccctcc tttgacaagg agtttgggaa   3660

cgggagcggg tgttggacag gtttttttta caggacatgc tccgcactct tgcctttttc   3720

tttggggggc catattcttc tttttccaat ttactcagct ctttctccca ggttggagtt   3780

atatcaccat acaaacctag aattagagga agcatccaat cttgagatac tctttgattt   3840

gcccctcctg gagcagcata atgttgtaca tagtgtccag atctaggctc tgaaccccct   3900

atctcccgcc tcagcctaac ttgttcctga tattcaaatt gttccctagt tgggggtagc   3960

tctcctctac ttctatactg ttgtctcagt tgtataggat ttactgaagg caaacctcta   4020

taatattctt caacactaga ataaatatga ataggcccat tagttagggc ccaccttgca   4080

ttttctgcaa tttgagcaag catatgttga aattcattag taccccttac agccaaagct   4140

ctagaagtat atccaatttg ctgagtagct tgcctcataa tatttctcca tatttccctg   4200

ccaacagcat gaaacagtga ttctccccag tctagagcag cattcagata gtaactaaaa   4260

gaagacaagc ctggaaacag atagtccact tgaggaaacc aaggagtgag agccatacta   4320

acaagtggta cttctttgga atatccaaaa gttgttactc ctgcagcaac cacagcactg   4380

gcacctgtaa cagtttgaaa aaagattcct attcctatgg cattgttcag ggcagttggt   4440

agagcactaa gtagagaaaa ttcttctgct gacagtccag tcaaagttaa ggcctctaag   4500

gctcctaggc ctgctacatc tacagcttct atttcaatta accaagctgc ttcagtagta   4560

gcagcagcta tagcttcccc agacaatatt gcatcaacag taaatccagt acttaaactt   4620

aattgttcag ccagttcaaa aatatccaac aatatagtta aaaccccccc catatcttac   4680

ccaagttcaa aattggcgcg tttagtttag gcgggcttct tctctgttga ccttagatgg   4740

caaaatgatt tcacttcccc cttagctact ggtatctaga ggggttgcta agcgccacct   4800

agcaacggaa accgcaatgc acttgtttgt cacacaccgg aatgtcacca aaaagtcccc   4860

aggcagtcaa gtggagcagg tagataccac agataccaca gtttcctcta gagttgattc   4920

tgcaaaaata acctgtcatt tagttcctca atttgcaaag ttatctccct gtcactcaaa   4980

atcactatgg caacacaggt ttttttttga tagtataaga ggccagggg               5029


<210>  2
<211>  1116
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(1116)

<220>
<221>  misc_feature
<222>  (1)..(371)
<223>  VP1

<400>  2
atg gcc ccc caa aga aaa agg caa gag tgc gga gca tgt cct gta aaa       48
Met Ala Pro Gln Arg Lys Arg Gln Glu Cys Gly Ala Cys Pro Val Lys         
1               5                   10                  15              

aaa acc tgt cca aca ccc gct ccc gtt ccc aaa ctc ctt gtc aaa gga       96
Lys Thr Cys Pro Thr Pro Ala Pro Val Pro Lys Leu Leu Val Lys Gly         
            20                  25                  30                  

ggg gta gaa gtt cta gaa gtt aga aca ggc cca gat gct ata act caa      144
Gly Val Glu Val Leu Glu Val Arg Thr Gly Pro Asp Ala Ile Thr Gln         
        35                  40                  45                      

att gag gcc tac cta aat cca aga atg gga aac aat aac cct act gat      192
Ile Glu Ala Tyr Leu Asn Pro Arg Met Gly Asn Asn Asn Pro Thr Asp         
    50                  55                  60                          

gaa ttg tat ggc tac agt gca gat ata aat gtt gcc tcc agc aag gct      240
Glu Leu Tyr Gly Tyr Ser Ala Asp Ile Asn Val Ala Ser Ser Lys Ala         
65                  70                  75                  80          

agt gat aac cct aat gct act acc ctc cct act tac tca gtg gct gta      288
Ser Asp Asn Pro Asn Ala Thr Thr Leu Pro Thr Tyr Ser Val Ala Val         
                85                  90                  95              

att aag cta ccc atg cta aat gaa gac atg acc tgt gac aca ctt cta      336
Ile Lys Leu Pro Met Leu Asn Glu Asp Met Thr Cys Asp Thr Leu Leu         
            100                 105                 110                 

atg tgg gag gct gtg tca gta aaa act gaa gtc atg ggg att agt tct      384
Met Trp Glu Ala Val Ser Val Lys Thr Glu Val Met Gly Ile Ser Ser         
        115                 120                 125                     

cta gta aat ctg cat cag ggg ggt aaa tat atc tat ggc tca tcc tca      432
Leu Val Asn Leu His Gln Gly Gly Lys Tyr Ile Tyr Gly Ser Ser Ser         
    130                 135                 140                         

gga act atc cca gtg cag ggt acc act ctc cac atg ttt tca gtg ggt      480
Gly Thr Ile Pro Val Gln Gly Thr Thr Leu His Met Phe Ser Val Gly         
145                 150                 155                 160         

gga gag cct ctt gaa ctt caa ggc cta gtt gct agc tct act act acc      528
Gly Glu Pro Leu Glu Leu Gln Gly Leu Val Ala Ser Ser Thr Thr Thr         
                165                 170                 175             

tat cct act gat atg gta act att aaa aat atg aaa cca gta aac cag      576
Tyr Pro Thr Asp Met Val Thr Ile Lys Asn Met Lys Pro Val Asn Gln         
            180                 185                 190                 

gcc ttg gat cct aat gct aaa gct ttg cta gac aaa gat gga aag tac      624
Ala Leu Asp Pro Asn Ala Lys Ala Leu Leu Asp Lys Asp Gly Lys Tyr         
        195                 200                 205                     

cct gta gaa gtt tgg agc cca gac ccc tct aaa aat gag aat aca aga      672
Pro Val Glu Val Trp Ser Pro Asp Pro Ser Lys Asn Glu Asn Thr Arg         
    210                 215                 220                         

tac tat ggg agc ttc act gga gga gcc aca acc ccc cct gtt atg cag      720
Tyr Tyr Gly Ser Phe Thr Gly Gly Ala Thr Thr Pro Pro Val Met Gln         
225                 230                 235                 240         

ttt act aac tct gta acc acg gtg cta ttg gat gaa aat gga gtg ggg      768
Phe Thr Asn Ser Val Thr Thr Val Leu Leu Asp Glu Asn Gly Val Gly         
                245                 250                 255             

cct ctt tgt aaa ggg gac aag ctg ttt ttg tct gct gtt gat att gtt      816
Pro Leu Cys Lys Gly Asp Lys Leu Phe Leu Ser Ala Val Asp Ile Val         
            260                 265                 270                 

gga att cac act aat tat tca gaa tcc caa aac tgg aga ggc cta cct      864
Gly Ile His Thr Asn Tyr Ser Glu Ser Gln Asn Trp Arg Gly Leu Pro         
        275                 280                 285                     

aga tat ttt aat gta act cta agg aaa cgg gtt gtt aaa aat cct tat      912
Arg Tyr Phe Asn Val Thr Leu Arg Lys Arg Val Val Lys Asn Pro Tyr         
    290                 295                 300                         

cct gta agc tct ctc ctt aat agc ttg ttc tct ggt ctt atg cct caa      960
Pro Val Ser Ser Leu Leu Asn Ser Leu Phe Ser Gly Leu Met Pro Gln         
305                 310                 315                 320         

att cag gga caa ccc atg gaa gga act tca ggg caa gtg gaa gaa gtc     1008
Ile Gln Gly Gln Pro Met Glu Gly Thr Ser Gly Gln Val Glu Glu Val         
                325                 330                 335             

aga att tat cag ggc act gaa ggc cta ccc ggg gac cct gat ctt gat     1056
Arg Ile Tyr Gln Gly Thr Glu Gly Leu Pro Gly Asp Pro Asp Leu Asp         
            340                 345                 350                 

aga tat gtt gat aaa ttt tgt cag aat caa act gtc ccc cct cgc tca     1104
Arg Tyr Val Asp Lys Phe Cys Gln Asn Gln Thr Val Pro Pro Arg Ser         
        355                 360                 365                     

aat gat caa tga                                                     1116
Asn Asp Gln                                                             
    370                                                                 


<210>  3
<211>  371
<212>  PRT
<213>  polyomavirus

<400>  3

Met Ala Pro Gln Arg Lys Arg Gln Glu Cys Gly Ala Cys Pro Val Lys 
1               5                   10                  15      


Lys Thr Cys Pro Thr Pro Ala Pro Val Pro Lys Leu Leu Val Lys Gly 
            20                  25                  30          


Gly Val Glu Val Leu Glu Val Arg Thr Gly Pro Asp Ala Ile Thr Gln 
        35                  40                  45              


Ile Glu Ala Tyr Leu Asn Pro Arg Met Gly Asn Asn Asn Pro Thr Asp 
    50                  55                  60                  


Glu Leu Tyr Gly Tyr Ser Ala Asp Ile Asn Val Ala Ser Ser Lys Ala 
65                  70                  75                  80  


Ser Asp Asn Pro Asn Ala Thr Thr Leu Pro Thr Tyr Ser Val Ala Val 
                85                  90                  95      


Ile Lys Leu Pro Met Leu Asn Glu Asp Met Thr Cys Asp Thr Leu Leu 
            100                 105                 110         


Met Trp Glu Ala Val Ser Val Lys Thr Glu Val Met Gly Ile Ser Ser 
        115                 120                 125             


Leu Val Asn Leu His Gln Gly Gly Lys Tyr Ile Tyr Gly Ser Ser Ser 
    130                 135                 140                 


Gly Thr Ile Pro Val Gln Gly Thr Thr Leu His Met Phe Ser Val Gly 
145                 150                 155                 160 


Gly Glu Pro Leu Glu Leu Gln Gly Leu Val Ala Ser Ser Thr Thr Thr 
                165                 170                 175     


Tyr Pro Thr Asp Met Val Thr Ile Lys Asn Met Lys Pro Val Asn Gln 
            180                 185                 190         


Ala Leu Asp Pro Asn Ala Lys Ala Leu Leu Asp Lys Asp Gly Lys Tyr 
        195                 200                 205             


Pro Val Glu Val Trp Ser Pro Asp Pro Ser Lys Asn Glu Asn Thr Arg 
    210                 215                 220                 


Tyr Tyr Gly Ser Phe Thr Gly Gly Ala Thr Thr Pro Pro Val Met Gln 
225                 230                 235                 240 


Phe Thr Asn Ser Val Thr Thr Val Leu Leu Asp Glu Asn Gly Val Gly 
                245                 250                 255     


Pro Leu Cys Lys Gly Asp Lys Leu Phe Leu Ser Ala Val Asp Ile Val 
            260                 265                 270         


Gly Ile His Thr Asn Tyr Ser Glu Ser Gln Asn Trp Arg Gly Leu Pro 
        275                 280                 285             


Arg Tyr Phe Asn Val Thr Leu Arg Lys Arg Val Val Lys Asn Pro Tyr 
    290                 295                 300                 


Pro Val Ser Ser Leu Leu Asn Ser Leu Phe Ser Gly Leu Met Pro Gln 
305                 310                 315                 320 


Ile Gln Gly Gln Pro Met Glu Gly Thr Ser Gly Gln Val Glu Glu Val 
                325                 330                 335     


Arg Ile Tyr Gln Gly Thr Glu Gly Leu Pro Gly Asp Pro Asp Leu Asp 
            340                 345                 350         


Arg Tyr Val Asp Lys Phe Cys Gln Asn Gln Thr Val Pro Pro Arg Ser 
        355                 360                 365             


Asn Asp Gln 
    370     


<210>  4
<211>  1059
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(1059)

<220>
<221>  misc_feature
<222>  (1)..(352)
<223>  VP2

<400>  4
atg ggg ggg gtt tta act ata ttg ttg gat att ttt gaa ctg gct gaa       48
Met Gly Gly Val Leu Thr Ile Leu Leu Asp Ile Phe Glu Leu Ala Glu         
1               5                   10                  15              

caa tta agt tta agt act gga ttt act gtt gat gca ata ttg tct ggg       96
Gln Leu Ser Leu Ser Thr Gly Phe Thr Val Asp Ala Ile Leu Ser Gly         
            20                  25                  30                  

gaa gct ata gct gct gct act act gaa gca gct tgg tta att gaa ata      144
Glu Ala Ile Ala Ala Ala Thr Thr Glu Ala Ala Trp Leu Ile Glu Ile         
        35                  40                  45                      

gaa gct gta gat gta gca ggc cta gga gcc tta gag gcc tta act ttg      192
Glu Ala Val Asp Val Ala Gly Leu Gly Ala Leu Glu Ala Leu Thr Leu         
    50                  55                  60                          

act gga ctg tca gca gaa gaa ttt tct cta ctt agt gct cta cca act      240
Thr Gly Leu Ser Ala Glu Glu Phe Ser Leu Leu Ser Ala Leu Pro Thr         
65                  70                  75                  80          

gcc ctg aac aat gcc ata gga ata gga atc ttt ttt caa act gtt aca      288
Ala Leu Asn Asn Ala Ile Gly Ile Gly Ile Phe Phe Gln Thr Val Thr         
                85                  90                  95              

ggt gcc agt gct gtg gtt gct gca gga gta aca act ttt gga tat tcc      336
Gly Ala Ser Ala Val Val Ala Ala Gly Val Thr Thr Phe Gly Tyr Ser         
            100                 105                 110                 

aaa gaa gta cca ctt gtt agt atg gct ctc act cct tgg ttt cct caa      384
Lys Glu Val Pro Leu Val Ser Met Ala Leu Thr Pro Trp Phe Pro Gln         
        115                 120                 125                     

gtg gac tat ctg ttt cca ggc ttg tct tct ttt agt tac tat ctg aat      432
Val Asp Tyr Leu Phe Pro Gly Leu Ser Ser Phe Ser Tyr Tyr Leu Asn         
    130                 135                 140                         

gct gct cta gac tgg gga gaa tca ctg ttt cat gct gtt ggc agg gaa      480
Ala Ala Leu Asp Trp Gly Glu Ser Leu Phe His Ala Val Gly Arg Glu         
145                 150                 155                 160         

ata tgg aga aat att atg agg caa gct act cag caa att gga tat act      528
Ile Trp Arg Asn Ile Met Arg Gln Ala Thr Gln Gln Ile Gly Tyr Thr         
                165                 170                 175             

tct aga gct ttg gct gta agg ggt act aat gaa ttt caa cat atg ctt      576
Ser Arg Ala Leu Ala Val Arg Gly Thr Asn Glu Phe Gln His Met Leu         
            180                 185                 190                 

gct caa att gca gaa aat gca agg tgg gcc cta act aat ggg cct att      624
Ala Gln Ile Ala Glu Asn Ala Arg Trp Ala Leu Thr Asn Gly Pro Ile         
        195                 200                 205                     

cat att tat tct agt gtt gaa gaa tat tat aga ggt ttg cct tca gta      672
His Ile Tyr Ser Ser Val Glu Glu Tyr Tyr Arg Gly Leu Pro Ser Val         
    210                 215                 220                         

aat cct ata caa ctg aga caa cag tat aga agt aga gga gag cta ccc      720
Asn Pro Ile Gln Leu Arg Gln Gln Tyr Arg Ser Arg Gly Glu Leu Pro         
225                 230                 235                 240         

cca act agg gaa caa ttt gaa tat cag gaa caa gtt agg ctg agg cgg      768
Pro Thr Arg Glu Gln Phe Glu Tyr Gln Glu Gln Val Arg Leu Arg Arg         
                245                 250                 255             

gag ata ggg ggt tca gag cct aga tct gga cac tat gta caa cat tat      816
Glu Ile Gly Gly Ser Glu Pro Arg Ser Gly His Tyr Val Gln His Tyr         
            260                 265                 270                 

gct gct cca gga ggg gca aat caa aga gta tct caa gat tgg atg ctt      864
Ala Ala Pro Gly Gly Ala Asn Gln Arg Val Ser Gln Asp Trp Met Leu         
        275                 280                 285                     

cct cta att cta ggt ttg tat ggt gat ata act cca acc tgg gag aaa      912
Pro Leu Ile Leu Gly Leu Tyr Gly Asp Ile Thr Pro Thr Trp Glu Lys         
    290                 295                 300                         

gag ctg agt aaa ttg gaa aaa gaa gaa tat ggc ccc cca aag aaa aag      960
Glu Leu Ser Lys Leu Glu Lys Glu Glu Tyr Gly Pro Pro Lys Lys Lys         
305                 310                 315                 320         

gca aga gtg cgg agc atg tcc tgt aaa aaa aac ctg tcc aac acc cgc     1008
Ala Arg Val Arg Ser Met Ser Cys Lys Lys Asn Leu Ser Asn Thr Arg         
                325                 330                 335             

tcc cgt tcc caa act cct tgt caa agg agg ggt aga agt tct aga agt     1056
Ser Arg Ser Gln Thr Pro Cys Gln Arg Arg Gly Arg Ser Ser Arg Ser         
            340                 345                 350                 

tag                                                                 1059


<210>  5
<211>  352
<212>  PRT
<213>  polyomavirus

<400>  5

Met Gly Gly Val Leu Thr Ile Leu Leu Asp Ile Phe Glu Leu Ala Glu 
1               5                   10                  15      


Gln Leu Ser Leu Ser Thr Gly Phe Thr Val Asp Ala Ile Leu Ser Gly 
            20                  25                  30          


Glu Ala Ile Ala Ala Ala Thr Thr Glu Ala Ala Trp Leu Ile Glu Ile 
        35                  40                  45              


Glu Ala Val Asp Val Ala Gly Leu Gly Ala Leu Glu Ala Leu Thr Leu 
    50                  55                  60                  


Thr Gly Leu Ser Ala Glu Glu Phe Ser Leu Leu Ser Ala Leu Pro Thr 
65                  70                  75                  80  


Ala Leu Asn Asn Ala Ile Gly Ile Gly Ile Phe Phe Gln Thr Val Thr 
                85                  90                  95      


Gly Ala Ser Ala Val Val Ala Ala Gly Val Thr Thr Phe Gly Tyr Ser 
            100                 105                 110         


Lys Glu Val Pro Leu Val Ser Met Ala Leu Thr Pro Trp Phe Pro Gln 
        115                 120                 125             


Val Asp Tyr Leu Phe Pro Gly Leu Ser Ser Phe Ser Tyr Tyr Leu Asn 
    130                 135                 140                 


Ala Ala Leu Asp Trp Gly Glu Ser Leu Phe His Ala Val Gly Arg Glu 
145                 150                 155                 160 


Ile Trp Arg Asn Ile Met Arg Gln Ala Thr Gln Gln Ile Gly Tyr Thr 
                165                 170                 175     


Ser Arg Ala Leu Ala Val Arg Gly Thr Asn Glu Phe Gln His Met Leu 
            180                 185                 190         


Ala Gln Ile Ala Glu Asn Ala Arg Trp Ala Leu Thr Asn Gly Pro Ile 
        195                 200                 205             


His Ile Tyr Ser Ser Val Glu Glu Tyr Tyr Arg Gly Leu Pro Ser Val 
    210                 215                 220                 


Asn Pro Ile Gln Leu Arg Gln Gln Tyr Arg Ser Arg Gly Glu Leu Pro 
225                 230                 235                 240 


Pro Thr Arg Glu Gln Phe Glu Tyr Gln Glu Gln Val Arg Leu Arg Arg 
                245                 250                 255     


Glu Ile Gly Gly Ser Glu Pro Arg Ser Gly His Tyr Val Gln His Tyr 
            260                 265                 270         


Ala Ala Pro Gly Gly Ala Asn Gln Arg Val Ser Gln Asp Trp Met Leu 
        275                 280                 285             


Pro Leu Ile Leu Gly Leu Tyr Gly Asp Ile Thr Pro Thr Trp Glu Lys 
    290                 295                 300                 


Glu Leu Ser Lys Leu Glu Lys Glu Glu Tyr Gly Pro Pro Lys Lys Lys 
305                 310                 315                 320 


Ala Arg Val Arg Ser Met Ser Cys Lys Lys Asn Leu Ser Asn Thr Arg 
                325                 330                 335     


Ser Arg Ser Gln Thr Pro Cys Gln Arg Arg Gly Arg Ser Ser Arg Ser 
            340                 345                 350         


<210>  6
<211>  702
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(702)

<220>
<221>  misc_feature
<222>  (1)..(702)
<223>  VP3

<220>
<221>  misc_feature
<222>  (1)..(233)
<223>  VP3

<400>  6
atg gct ctc act cct tgg ttt cct caa gtg gac tat ctg ttt cca ggc       48
Met Ala Leu Thr Pro Trp Phe Pro Gln Val Asp Tyr Leu Phe Pro Gly         
1               5                   10                  15              

ttg tct tct ttt agt tac tat ctg aat gct gct cta gac tgg gga gaa       96
Leu Ser Ser Phe Ser Tyr Tyr Leu Asn Ala Ala Leu Asp Trp Gly Glu         
            20                  25                  30                  

tca ctg ttt cat gct gtt ggc agg gaa ata tgg aga aat att atg agg      144
Ser Leu Phe His Ala Val Gly Arg Glu Ile Trp Arg Asn Ile Met Arg         
        35                  40                  45                      

caa gct act cag caa att gga tat act tct aga gct ttg gct gta agg      192
Gln Ala Thr Gln Gln Ile Gly Tyr Thr Ser Arg Ala Leu Ala Val Arg         
    50                  55                  60                          

ggt act aat gaa ttt caa cat atg ctt gct caa att gca gaa aat gca      240
Gly Thr Asn Glu Phe Gln His Met Leu Ala Gln Ile Ala Glu Asn Ala         
65                  70                  75                  80          

agg tgg gcc cta act aat ggg cct att cat att tat tct agt gtt gaa      288
Arg Trp Ala Leu Thr Asn Gly Pro Ile His Ile Tyr Ser Ser Val Glu         
                85                  90                  95              

gaa tat tat aga ggt ttg cct tca gta aat cct ata caa ctg aga caa      336
Glu Tyr Tyr Arg Gly Leu Pro Ser Val Asn Pro Ile Gln Leu Arg Gln         
            100                 105                 110                 

cag tat aga agt aga gga gag cta ccc cca act agg gaa caa ttt gaa      384
Gln Tyr Arg Ser Arg Gly Glu Leu Pro Pro Thr Arg Glu Gln Phe Glu         
        115                 120                 125                     

tat cag gaa caa gtt agg ctg agg cgg gag ata ggg ggt tca gag cct      432
Tyr Gln Glu Gln Val Arg Leu Arg Arg Glu Ile Gly Gly Ser Glu Pro         
    130                 135                 140                         

aga tct gga cac tat gta caa cat tat gct gct cca gga ggg gca aat      480
Arg Ser Gly His Tyr Val Gln His Tyr Ala Ala Pro Gly Gly Ala Asn         
145                 150                 155                 160         

caa aga gta tct caa gat tgg atg ctt cct cta att cta ggt ttg tat      528
Gln Arg Val Ser Gln Asp Trp Met Leu Pro Leu Ile Leu Gly Leu Tyr         
                165                 170                 175             

ggt gat ata act cca acc tgg gag aaa gag ctg agt aaa ttg gaa aaa      576
Gly Asp Ile Thr Pro Thr Trp Glu Lys Glu Leu Ser Lys Leu Glu Lys         
            180                 185                 190                 

gaa gaa tat ggc ccc cca aag aaa aag gca aga gtg cgg agc atg tcc      624
Glu Glu Tyr Gly Pro Pro Lys Lys Lys Ala Arg Val Arg Ser Met Ser         
        195                 200                 205                     

tgt aaa aaa aac ctg tcc aac acc cgc tcc cgt tcc caa act cct tgt      672
Cys Lys Lys Asn Leu Ser Asn Thr Arg Ser Arg Ser Gln Thr Pro Cys         
    210                 215                 220                         

caa agg agg ggt aga agt tct aga agt tag                              702
Gln Arg Arg Gly Arg Ser Ser Arg Ser                                     
225                 230                                                 


<210>  7
<211>  233
<212>  PRT
<213>  polyomavirus

<400>  7

Met Ala Leu Thr Pro Trp Phe Pro Gln Val Asp Tyr Leu Phe Pro Gly 
1               5                   10                  15      


Leu Ser Ser Phe Ser Tyr Tyr Leu Asn Ala Ala Leu Asp Trp Gly Glu 
            20                  25                  30          


Ser Leu Phe His Ala Val Gly Arg Glu Ile Trp Arg Asn Ile Met Arg 
        35                  40                  45              


Gln Ala Thr Gln Gln Ile Gly Tyr Thr Ser Arg Ala Leu Ala Val Arg 
    50                  55                  60                  


Gly Thr Asn Glu Phe Gln His Met Leu Ala Gln Ile Ala Glu Asn Ala 
65                  70                  75                  80  


Arg Trp Ala Leu Thr Asn Gly Pro Ile His Ile Tyr Ser Ser Val Glu 
                85                  90                  95      


Glu Tyr Tyr Arg Gly Leu Pro Ser Val Asn Pro Ile Gln Leu Arg Gln 
            100                 105                 110         


Gln Tyr Arg Ser Arg Gly Glu Leu Pro Pro Thr Arg Glu Gln Phe Glu 
        115                 120                 125             


Tyr Gln Glu Gln Val Arg Leu Arg Arg Glu Ile Gly Gly Ser Glu Pro 
    130                 135                 140                 


Arg Ser Gly His Tyr Val Gln His Tyr Ala Ala Pro Gly Gly Ala Asn 
145                 150                 155                 160 


Gln Arg Val Ser Gln Asp Trp Met Leu Pro Leu Ile Leu Gly Leu Tyr 
                165                 170                 175     


Gly Asp Ile Thr Pro Thr Trp Glu Lys Glu Leu Ser Lys Leu Glu Lys 
            180                 185                 190         


Glu Glu Tyr Gly Pro Pro Lys Lys Lys Ala Arg Val Arg Ser Met Ser 
        195                 200                 205             


Cys Lys Lys Asn Leu Ser Asn Thr Arg Ser Arg Ser Gln Thr Pro Cys 
    210                 215                 220                 


Gln Arg Arg Gly Arg Ser Ser Arg Ser 
225                 230             


<210>  8
<211>  1614
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(1614)

<220>
<221>  misc_feature
<222>  (1)..(1614)
<223>  nt genomic Large T polyomavirus

<400>  8
atg gat caa act ctg tct ttg gag gag aga aat gag ctt atg gat ttg       48
Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu         
1               5                   10                  15              

ctg caa ctt aca aga gca gca tgg gga aat tta tct ctt atg aaa aag       96
Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys         
            20                  25                  30                  

gcc tac aaa aca gtt tcc aaa att tac cac cct gat aaa ggt ggt aat      144
Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn         
        35                  40                  45                      

cct gag aaa atg caa aga tta aat gaa tta ttt caa aag ctg caa gtt      192
Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val         
    50                  55                  60                          

acc ttg ctg gaa ata aga agt aat tgt gga tcc tcc tct tct cag gga      240
Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Gly         
65                  70                  75                  80          

tac tac agt gat tct cca tac ttt act gaa act cca ttt tcc tac tgt      288
Tyr Tyr Ser Asp Ser Pro Tyr Phe Thr Glu Thr Pro Phe Ser Tyr Cys         
                85                  90                  95              

gaa aga aaa aat gaa gat cca gaa ggg ggg tca tgg ggt aaa tgg tgg      336
Glu Arg Lys Asn Glu Asp Pro Glu Gly Gly Ser Trp Gly Lys Trp Trp         
            100                 105                 110                 

agg gag ttt gtt aac aaa gaa tat gat gat tta ttt tgt tca gag act      384
Arg Glu Phe Val Asn Lys Glu Tyr Asp Asp Leu Phe Cys Ser Glu Thr         
        115                 120                 125                     

ata tca tct agt gat gat gaa aat aat cct gga cct tca gcc cct cca      432
Ile Ser Ser Ser Asp Asp Glu Asn Asn Pro Gly Pro Ser Ala Pro Pro         
    130                 135                 140                         

ccc tct tct gct tct gcc tct gaa gac cct gat cct gag gaa gaa gct      480
Pro Ser Ser Ala Ser Ala Ser Glu Asp Pro Asp Pro Glu Glu Glu Ala         
145                 150                 155                 160         

gga tca tcc cag agt tca ttt acc tgc acg ccc ccc aaa aga aag aag      528
Gly Ser Ser Gln Ser Ser Phe Thr Cys Thr Pro Pro Lys Arg Lys Lys         
                165                 170                 175             

cct gaa cct aat act cca gag gac ttt cct atg tgt ttg tat tct ttt      576
Pro Glu Pro Asn Thr Pro Glu Asp Phe Pro Met Cys Leu Tyr Ser Phe         
            180                 185                 190                 

tta agt cat gct atc tat agt aat aag act atg aat tgc ttt tta att      624
Leu Ser His Ala Ile Tyr Ser Asn Lys Thr Met Asn Cys Phe Leu Ile         
        195                 200                 205                     

tat act aca gtt gaa aaa agt aag cag ctt tac aga act gtt gaa aaa      672
Tyr Thr Thr Val Glu Lys Ser Lys Gln Leu Tyr Arg Thr Val Glu Lys         
    210                 215                 220                         

tca aaa att aaa gta gat ttt aag gct att ttc ttg tat aaa gat gat      720
Ser Lys Ile Lys Val Asp Phe Lys Ala Ile Phe Leu Tyr Lys Asp Asp         
225                 230                 235                 240         

gga att gaa gga ggc ctg tta tat ttt att acc tta ggc aag cat aga      768
Gly Ile Glu Gly Gly Leu Leu Tyr Phe Ile Thr Leu Gly Lys His Arg         
                245                 250                 255             

gtt tct gct gta aaa cat ttt tgt gtt gca cag tgt act ttt agt ttc      816
Val Ser Ala Val Lys His Phe Cys Val Ala Gln Cys Thr Phe Ser Phe         
            260                 265                 270                 

att cat tgt aaa gct gtt att aaa cct tta gag ctt tat aga gct tta      864
Ile His Cys Lys Ala Val Ile Lys Pro Leu Glu Leu Tyr Arg Ala Leu         
        275                 280                 285                     

ggt aaa ccc cct ttt aag ttg ttg gaa gaa aac aag cct ggt gta tcc      912
Gly Lys Pro Pro Phe Lys Leu Leu Glu Glu Asn Lys Pro Gly Val Ser         
    290                 295                 300                         

atg ttt gac ttt cag gag gaa aaa gaa cag gct gta aat tgg cag gag      960
Met Phe Asp Phe Gln Glu Glu Lys Glu Gln Ala Val Asn Trp Gln Glu         
305                 310                 315                 320         

att tgt aat tat gcg gtt gaa gca aaa att act gat gta tta ctg ttg     1008
Ile Cys Asn Tyr Ala Val Glu Ala Lys Ile Thr Asp Val Leu Leu Leu         
                325                 330                 335             

ctt ggc atc tac cta gat ttt gca gtg gaa cct ggc act tgc tct aaa     1056
Leu Gly Ile Tyr Leu Asp Phe Ala Val Glu Pro Gly Thr Cys Ser Lys         
            340                 345                 350                 

tgt gaa aaa aag agt cat aaa ttc cat tat aat tac cac agt aag cat     1104
Cys Glu Lys Lys Ser His Lys Phe His Tyr Asn Tyr His Ser Lys His         
        355                 360                 365                     

cat gcc aat gct tgc ctt ttc ttg gag agt aaa tcc caa aag aat atc     1152
His Ala Asn Ala Cys Leu Phe Leu Glu Ser Lys Ser Gln Lys Asn Ile         
    370                 375                 380                         

tgc caa caa gca gtt gac cag gtc ctt gca gct aag aga tta aag ctt     1200
Cys Gln Gln Ala Val Asp Gln Val Leu Ala Ala Lys Arg Leu Lys Leu         
385                 390                 395                 400         

gta gag tgt act aga atg gag ctt tta gaa gat aga ttt att caa ctt     1248
Val Glu Cys Thr Arg Met Glu Leu Leu Glu Asp Arg Phe Ile Gln Leu         
                405                 410                 415             

ttt gat gaa atg gag gac ttt ttg cat ggg gaa att gaa att cta aga     1296
Phe Asp Glu Met Glu Asp Phe Leu His Gly Glu Ile Glu Ile Leu Arg         
            420                 425                 430                 

tgg atg tca ggt gtg gcc tgg tac acc att tta ctt gac aac tca tgg     1344
Trp Met Ser Gly Val Ala Trp Tyr Thr Ile Leu Leu Asp Asn Ser Trp         
        435                 440                 445                     

gat gtt ttt caa aaa att ttg cag ctg gta acc aca agc caa cca aaa     1392
Asp Val Phe Gln Lys Ile Leu Gln Leu Val Thr Thr Ser Gln Pro Lys         
    450                 455                 460                         

aag agg aac ata ctc ttt aaa ggc cct ata aat agt ggc aaa acc acc     1440
Lys Arg Asn Ile Leu Phe Lys Gly Pro Ile Asn Ser Gly Lys Thr Thr         
465                 470                 475                 480         

tta gct tct gct ttc atg cac ttt ttt gat ggt aaa gct ttg aat att     1488
Leu Ala Ser Ala Phe Met His Phe Phe Asp Gly Lys Ala Leu Asn Ile         
                485                 490                 495             

aac tgc cca gca gaa aaa tta tct ttt gag tta ggc tgt gct att gat     1536
Asn Cys Pro Ala Glu Lys Leu Ser Phe Glu Leu Gly Cys Ala Ile Asp         
            500                 505                 510                 

caa ttt tgt gtt ttg ctt gat gat gtg aag ggc cag ata act tta aac     1584
Gln Phe Cys Val Leu Leu Asp Asp Val Lys Gly Gln Ile Thr Leu Asn         
        515                 520                 525                     

aaa aca tct tca acc tgg gca ggg agt taa                             1614
Lys Thr Ser Ser Thr Trp Ala Gly Ser                                     
    530                 535                                             


<210>  9
<211>  537
<212>  PRT
<213>  polyomavirus

<400>  9

Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu 
1               5                   10                  15      


Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys 
            20                  25                  30          


Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn 
        35                  40                  45              


Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val 
    50                  55                  60                  


Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Gly 
65                  70                  75                  80  


Tyr Tyr Ser Asp Ser Pro Tyr Phe Thr Glu Thr Pro Phe Ser Tyr Cys 
                85                  90                  95      


Glu Arg Lys Asn Glu Asp Pro Glu Gly Gly Ser Trp Gly Lys Trp Trp 
            100                 105                 110         


Arg Glu Phe Val Asn Lys Glu Tyr Asp Asp Leu Phe Cys Ser Glu Thr 
        115                 120                 125             


Ile Ser Ser Ser Asp Asp Glu Asn Asn Pro Gly Pro Ser Ala Pro Pro 
    130                 135                 140                 


Pro Ser Ser Ala Ser Ala Ser Glu Asp Pro Asp Pro Glu Glu Glu Ala 
145                 150                 155                 160 


Gly Ser Ser Gln Ser Ser Phe Thr Cys Thr Pro Pro Lys Arg Lys Lys 
                165                 170                 175     


Pro Glu Pro Asn Thr Pro Glu Asp Phe Pro Met Cys Leu Tyr Ser Phe 
            180                 185                 190         


Leu Ser His Ala Ile Tyr Ser Asn Lys Thr Met Asn Cys Phe Leu Ile 
        195                 200                 205             


Tyr Thr Thr Val Glu Lys Ser Lys Gln Leu Tyr Arg Thr Val Glu Lys 
    210                 215                 220                 


Ser Lys Ile Lys Val Asp Phe Lys Ala Ile Phe Leu Tyr Lys Asp Asp 
225                 230                 235                 240 


Gly Ile Glu Gly Gly Leu Leu Tyr Phe Ile Thr Leu Gly Lys His Arg 
                245                 250                 255     


Val Ser Ala Val Lys His Phe Cys Val Ala Gln Cys Thr Phe Ser Phe 
            260                 265                 270         


Ile His Cys Lys Ala Val Ile Lys Pro Leu Glu Leu Tyr Arg Ala Leu 
        275                 280                 285             


Gly Lys Pro Pro Phe Lys Leu Leu Glu Glu Asn Lys Pro Gly Val Ser 
    290                 295                 300                 


Met Phe Asp Phe Gln Glu Glu Lys Glu Gln Ala Val Asn Trp Gln Glu 
305                 310                 315                 320 


Ile Cys Asn Tyr Ala Val Glu Ala Lys Ile Thr Asp Val Leu Leu Leu 
                325                 330                 335     


Leu Gly Ile Tyr Leu Asp Phe Ala Val Glu Pro Gly Thr Cys Ser Lys 
            340                 345                 350         


Cys Glu Lys Lys Ser His Lys Phe His Tyr Asn Tyr His Ser Lys His 
        355                 360                 365             


His Ala Asn Ala Cys Leu Phe Leu Glu Ser Lys Ser Gln Lys Asn Ile 
    370                 375                 380                 


Cys Gln Gln Ala Val Asp Gln Val Leu Ala Ala Lys Arg Leu Lys Leu 
385                 390                 395                 400 


Val Glu Cys Thr Arg Met Glu Leu Leu Glu Asp Arg Phe Ile Gln Leu 
                405                 410                 415     


Phe Asp Glu Met Glu Asp Phe Leu His Gly Glu Ile Glu Ile Leu Arg 
            420                 425                 430         


Trp Met Ser Gly Val Ala Trp Tyr Thr Ile Leu Leu Asp Asn Ser Trp 
        435                 440                 445             


Asp Val Phe Gln Lys Ile Leu Gln Leu Val Thr Thr Ser Gln Pro Lys 
    450                 455                 460                 


Lys Arg Asn Ile Leu Phe Lys Gly Pro Ile Asn Ser Gly Lys Thr Thr 
465                 470                 475                 480 


Leu Ala Ser Ala Phe Met His Phe Phe Asp Gly Lys Ala Leu Asn Ile 
                485                 490                 495     


Asn Cys Pro Ala Glu Lys Leu Ser Phe Glu Leu Gly Cys Ala Ile Asp 
            500                 505                 510         


Gln Phe Cys Val Leu Leu Asp Asp Val Lys Gly Gln Ile Thr Leu Asn 
        515                 520                 525             


Lys Thr Ser Ser Thr Trp Ala Gly Ser 
    530                 535         


<210>  10
<211>  570
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(570)

<220>
<221>  misc_feature
<222>  (1)..(570)
<223>  nt -  genomic DNA  - Small T polyomavirus

<400>  10
atg gat caa act ctg tct ttg gag gag aga aat gag ctt atg gat ttg       48
Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu         
1               5                   10                  15              

ctg caa ctt aca aga gca gca tgg gga aat tta tct ctt atg aaa aag       96
Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys         
            20                  25                  30                  

gcc tac aaa aca gtt tcc aaa att tac cac cct gat aaa ggt ggt aat      144
Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn         
        35                  40                  45                      

cct gag aaa atg caa aga tta aat gaa tta ttt caa aag ctg caa gtt      192
Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val         
    50                  55                  60                          

acc ttg ctg gaa ata aga agt aat tgt gga tcc tcc tct tct cag gta      240
Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Val         
65                  70                  75                  80          

gct tgg tac ttt tgg gat gag aat ttt aga aca cta ggt gct ttt cta      288
Ala Trp Tyr Phe Trp Asp Glu Asn Phe Arg Thr Leu Gly Ala Phe Leu         
                85                  90                  95              

gga gaa aaa ttt aat caa aga att att ggt gga tat cct gat tgc att      336
Gly Glu Lys Phe Asn Gln Arg Ile Ile Gly Gly Tyr Pro Asp Cys Ile         
            100                 105                 110                 

acc tat aat aag ccc agt tgt tgc tgc att gta tgt tta tta aag cag      384
Thr Tyr Asn Lys Pro Ser Cys Cys Cys Ile Val Cys Leu Leu Lys Gln         
        115                 120                 125                     

cag cac aaa agt aca aaa ata aat aaa aaa aag cct tgc tta gta tgg      432
Gln His Lys Ser Thr Lys Ile Asn Lys Lys Lys Pro Cys Leu Val Trp         
    130                 135                 140                         

ggt gaa tgc ttt tgc tac aag tgc tac tta ctt tgg ttt gga ttt cct      480
Gly Glu Cys Phe Cys Tyr Lys Cys Tyr Leu Leu Trp Phe Gly Phe Pro         
145                 150                 155                 160         

gag gat ttt aca tct ttt aac tac tgg acc tta tta atg aga aat atg      528
Glu Asp Phe Thr Ser Phe Asn Tyr Trp Thr Leu Leu Met Arg Asn Met         
                165                 170                 175             

gat tta agt ttg ctg cgc ctc tgg act gag ctt gga ttc taa              570
Asp Leu Ser Leu Leu Arg Leu Trp Thr Glu Leu Gly Phe                     
            180                 185                                     


<210>  11
<211>  189
<212>  PRT
<213>  polyomavirus

<400>  11

Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu 
1               5                   10                  15      


Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys 
            20                  25                  30          


Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn 
        35                  40                  45              


Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val 
    50                  55                  60                  


Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Val 
65                  70                  75                  80  


Ala Trp Tyr Phe Trp Asp Glu Asn Phe Arg Thr Leu Gly Ala Phe Leu 
                85                  90                  95      


Gly Glu Lys Phe Asn Gln Arg Ile Ile Gly Gly Tyr Pro Asp Cys Ile 
            100                 105                 110         


Thr Tyr Asn Lys Pro Ser Cys Cys Cys Ile Val Cys Leu Leu Lys Gln 
        115                 120                 125             


Gln His Lys Ser Thr Lys Ile Asn Lys Lys Lys Pro Cys Leu Val Trp 
    130                 135                 140                 


Gly Glu Cys Phe Cys Tyr Lys Cys Tyr Leu Leu Trp Phe Gly Phe Pro 
145                 150                 155                 160 


Glu Asp Phe Thr Ser Phe Asn Tyr Trp Thr Leu Leu Met Arg Asn Met 
                165                 170                 175     


Asp Leu Ser Leu Leu Arg Leu Trp Thr Glu Leu Gly Phe 
            180                 185                 


<210>  12
<211>  57
<212>  DNA
<213>  polyomavirus

<400>  12
ttgtatggct acagtgcaga tataaatgtt gcctccagca aggctagtga taaccct        57


<210>  13
<211>  19
<212>  PRT
<213>  polyomavirus

<400>  13

Leu Tyr Gly Tyr Ser Ala Asp Ile Asn Val Ala Ser Ser Lys Ala Ser 
1               5                   10                  15      


Asp Asn Pro 
            


<210>  14
<211>  54
<212>  DNA
<213>  polyomavirus

<400>  14
ctgcatcagg ggggtaaata tatctatggc tcatcctcag gaactatccc agtg           54


<210>  15
<211>  18
<212>  PRT
<213>  polyomavirus

<400>  15

Leu His Gln Gly Gly Lys Tyr Ile Tyr Gly Ser Ser Ser Gly Thr Ile 
1               5                   10                  15      


Pro Val 
        


<210>  16
<211>  15
<212>  DNA
<213>  polyomavirus

<400>  16
aattattcag aatcc                                                      15


<210>  17
<211>  5
<212>  PRT
<213>  polyomavirus

<400>  17

Asn Tyr Ser Glu Ser 
1               5   


<210>  18
<211>  244
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(244)
<223>  contig6449 IPPyV

<220>
<221>  misc_feature
<222>  (1)..(244)
<223>  contig649 IPPyV

<400>  18
cttcacatca tcaagcaaaa cacaaaattg atcaatagca cagcctaact caaaagataa     60

tttttctgct gggcagttaa tattcaaagc tttaccatca aaaaagtgca tgaaagcaga    120

agctaaggtg gttttgccac tatttatagg gcctttaaag agtatgttcc tcttttttgg    180

ttggcttgtg gttaccagct gcaaaatttt ttgaaaaaca tcccatgagt tgtcaagtaa    240

aatg                                                                 244


<210>  19
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  19
tgatcaatag cacagcctaa c                                               21


<210>  20
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  20
aattttgcag ctggtaacca c                                               21


<210>  21
<211>  190
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(190)
<223>  contig 650

<400>  21
aatccatatt tctcattaat aaggtccagt agttaaaaga tgtaaaatcc tcaggaaatc     60

caaaccaaag taagtagcac ttgtagcaaa agcattcacc ccatactaag caaggctttt    120

ttttatttat ttttgtactt ttgtgctgct gctttaataa acatacaatg cagcaacaac    180

tgggcttatt                                                           190


<210>  22
<211>  22
<212>  DNA
<213>  polyomavirus

<400>  22
tctcattaat aaggtccagt ag                                              22


<210>  23
<211>  22
<212>  DNA
<213>  polyomavirus

<400>  23
tattaaagca gcagcacaaa ag                                              22


<210>  24
<211>  329
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(329)
<223>  contig 816

<400>  24
aagtaaaatg gtgtaccagg ccacacctga catccatctt agaatttcaa tttccccatg     60

caaaaagtcc tccatttcat caaaaagttg aataaatcta tcttctaaaa gctccattct    120

agtacactct acaagcttta atctcttagc tgcaaggacc tggtcaactg cttgttggca    180

gatattcttt tgggatttac tctccaagaa aaggcaagca ttggcatgat gcttactgtg    240

gtaattataa tggaatttat gactcttttt ttcacattta gagcaagtgc caggttccac    300

tgcaaaatct aggtagatgc caagcaaca                                      329


<210>  25
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  25
aaatggtgta ccaggccaca c                                               21


<210>  26
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  26
ttttgcagtg gaacctggca c                                               21


<210>  27
<211>  193
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(193)
<223>  contig 1378

<400>  27
attgaaggag gcctgttata ttttattacc ttaggcaagc atagagtttc tgctgtaaaa     60

catttttgtg ttgcacagtg tacttttagt ttcattcatt gtaaagctgt tattaaacct    120

ttagagcttt atagagcttt aggtaaaccc ccttttaagt tgttggaaga aaacaagcct    180

ggtgtatcca tgt                                                       193


<210>  28
<211>  23
<212>  DNA
<213>  polyomavirus

<400>  28
accttaggca agcatagagt ttc                                             23


<210>  29
<211>  23
<212>  DNA
<213>  polyomavirus

<400>  29
atggatacac caggcttgtt ttc                                             23


<210>  30
<211>  240
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(240)
<223>  contig 4636

<400>  30
cttcagtgcc ctgataaatt ctgacttctt ccacttgccc tgaagttcct tccatgggtt     60

gtccctgaat ttgaggcata agaccagaga acaagctatt aaggagagag cttacaggat    120

aaggattttt aacaacccgt ttccttagag ttacattaaa atatctaggt aggcctctcc    180

agttttggga ttctgaataa ttagtgtgaa ttccaacaat atcaacagca gacaaaaaca    240


<210>  31
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  31
tctgacttct tccacttgcc c                                               21


<210>  32
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  32
cccaaaactg gagaggccta c                                               21


<210>  33
<211>  290
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(290)
<223>  contig 6390

<400>  33
atctgaatgc tgctctagac tggggagaat cactgtttca tgctgttggc agggaaatat     60

ggagaaatat tatgaggcaa gctactcagc aaattggata tacttctaga gctttggctg    120

taaggggtac taatgaattt caacatatgc ttgctcaaat tgcagaaaat gcaaggtggg    180

ccctaactaa tgggcctatt catatttatt ctagtgttga agaatattat agaggtttgc    240

cttcagtaaa tcctatacaa ctgagacaac agtatagaag tagaggagag               290


<210>  34
<211>  20
<212>  DNA
<213>  polyomavirus

<400>  34
ctgaatgctg ctctagactg                                                 20


<210>  35
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  35
ctctcctcta cttctatact g                                               21


<210>  36
<211>  273
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(273)
<223>  contig 6671

<400>  36
aattacttct tatttccagc aaggtaactt gcagcttttg aaataattca tttaatcttt     60

gcattttctc aggattacca cctttatcag ggtggtaaat tttggaaact gttttgtagg    120

cctttttcat aagagataaa tttccccatg ctgctcttgt aagttgcagc aaatccataa    180

gctcatttct ctcctccaaa gacagagttt gatccatggc tctgcaaaaa gtaaaataag    240

tcttactacc tgagaatcaa gttaattaag ttt                                 273


<210>  37
<211>  20
<212>  DNA
<213>  polyomavirus

<400>  37
tccagcaagg taacttgcag                                                 20


<210>  38
<211>  20
<212>  DNA
<213>  polyomavirus

<400>  38
actctgtctt tggaggagag                                                 20


<210>  39
<211>  24
<212>  DNA
<213>  polyomavirus

<400>  39
aattacttct tatttccagc aagg                                            24


<210>  40
<211>  25
<212>  DNA
<213>  polyomavirus

<400>  40
aaacttaatt aacttgattc tcagg                                           25


<210>  41
<211>  252
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(252)
<223>  contig 7646

<400>  41
aagtgtgtca caggtcatgt cttcatttag catgggtagc ttaattacag ccactgagta     60

agtagggagg gtagtagcat tagggttatc actagccttg ctggaggcaa catttatatc    120

tgcactgtag ccatacaatt catcagtagg gttattgttt cccattcttg gatttaggta    180

ggcctcaatt tgagttatag catctgggcc tgttctaact tctagaactt ctacccctcc    240

tttgacaagg ag                                                        252


<210>  42
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  42
acagccactg agtaagtagg g                                               21


<210>  43
<211>  21
<212>  DNA
<213>  polyomavirus

<400>  43
tccttgtcaa aggaggggta g                                               21


<210>  44
<211>  134
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(134)
<223>  Contig 5689

<400>  44
aacaaacatc ttcaacctgg gcagggagtt aataatttgg ataatttaag agatcactta     60

gatggtacta ttaaagttaa tctggaaaaa aaacatgtga ataaaagaag ccagatattt    120

cctcctgtaa ttat                                                      134


<210>  45
<211>  124
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(124)
<223>  Contig 1884

<400>  45
atgtggagag tggtaccctg cactgggata gttcctgagg atgagccata gatatattta     60

cccccctgat gcagatttac tagagaacta atccccatga cttcagtttt tactgacaca    120

gcct                                                                 124


<210>  46
<211>  110
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(110)
<223>  Contig 4639

<400>  46
taatgttgta catagtgtcc agatctaggc tctgaacccc ctatctcccg cctcagccta     60

acttgttcct gatattcaaa ttgttcccta gtaggggatg aatcttaaga               110


<210>  47
<211>  141
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(141)
<223>  Contig 4874

<400>  47
ctactactga agcagcttgg ttaattgaaa tagaagctgt agatgtagca ggcctaggag     60

ccttagaggc cttaactttg actggactgt cagcagaaga attttctcta cttagtgctc    120

taccaactgc cctgaacaat g                                              141


<210>  48
<211>  159
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(159)
<223>  Contig 2412

<400>  48
atgctatcta tagtaataag actatgaatt gctttttaat ttatactaca gttgaaaaaa     60

gtaagcagct ttacagaact gttgaaaaat caaaaattaa agtagatttt aaggctattt    120

tcttgtataa agatgatgga attgaaggag gcctgttat                           159


<210>  49
<211>  160
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(160)
<223>  Contig 6783

<400>  49
ctccagtgaa gctcccatag tatcttgtat tctcattttt agaggggtct gggctccaaa     60

cttctacagg gtactttcca tctttgtcta gcaaagcttt agcattagga tccaaggcct    120

ggtttactgg tttcatattt ttaatagtta ccatatcagt                          160


<210>  50
<211>  122
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(122)
<223>  Contig 5689 LPV

<400>  50
caaccaggtc aaggggtaaa taatcttgat aacctgagag atcatcttga tggaacaatt     60

aaagttaatt tagaaaagaa acatgtaaac aaaaggagtc aaatttttcc cccggttatt    120

at                                                                   122


<210>  51
<211>  122
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(122)
<223>  IPPyv contig 5689

<400>  51
caacctgggc agggagttaa taatttggat aatttaagag atcacttaga tggtactatt     60

aaagttaatc tggaaaaaaa acatgtgaat aaaagaagcc agatatttcc tcctgtaatt    120

at                                                                   122


<210>  52
<211>  244
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(244)
<223>  LPV contig 649

<400>  52
cattttacta gataattctt gggatgtttt tcaaaatatc ctacaattaa taactaccag     60

ccaacccaaa aaaaggaatg tcctgataaa gggaccaatt aacagtggta aaactacttt    120

ggcttctgct ttcatgcatt tttttgatgg caaagctcta aatataaatt gtcctgcaga    180

taaactgtcc tttgaacttg gctgtgctat tgatcaattc tgtgttttgt tagatgatgt    240

gaag                                                                 244


<210>  53
<211>  244
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(244)
<223>  IPPyV contig 649

<400>  53
cattttactt gacaactcat gggatgtttt tcaaaaaatt ttgcagctgg taaccacaag     60

ccaaccaaaa aagaggaaca tactctttaa aggccctata aatagtggca aaaccacctt    120

agcttctgct ttcatgcact tttttgatgg taaagctttg aatattaact gcccagcaga    180

aaaattatct tttgagttag gctgtgctat tgatcaattt tgtgttttgc ttgatgatgt    240

gaag                                                                 244


<210>  54
<211>  172
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(172)
<223>  LPV contig 650

<400>  54
tgtatagtat gtctgctaaa aaagcagcat gcaggtacaa aaaaaaattt aaaaaagcca     60

tgtttagtct ggggagaatg ttggtgctac aaatgttatt tagtatggtt tggctttcct    120

gaggatttca cctcttttcg ctactggacc cttcttatgg caaatatgga tt            172


<210>  55
<211>  172
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(172)
<223>  IPPyV contig 650

<400>  55
tgcattgtat gtttattaaa gcagcagcac aaaagtacaa aaataaataa aaaaaagcct     60

tgcttagtat ggggtgaatg cttttgctac aagtgctact tactttggtt tggatttcct    120

gaggatttta catcttttaa ctactggacc ttattaatga gaaatatgga tt            172


<210>  56
<211>  328
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(328)
<223>  LPV contig 816

<400>  56
tgttgcttgg catctacata gattttgcag tggaacctgg caaatgtggc aagtgtgaaa     60

aaaagcagca caaattccac tataattatc acaaagcaca tcatgccaat gcttgcctct    120

tcttggagag tagagcccaa aaaaacattt gccaacaagc agttgaccag gtcctagcag    180

ctaaaaggtt aaaattagta gaatgcagta gaattgaatt attagaagag agatttttgc    240

agctttttga tgaaatggat gacttcctgc atggtgagat agaaattcta agatggatgg    300

cgggtgtggc ctggtacacc attttact                                       328


<210>  57
<211>  328
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(328)
<223>  IPPyV contig 816

<400>  57
tgttgcttgg catctaccta gattttgcag tggaacctgg cacttgctct aaatgtgaaa     60

aaaagagtca taaattccat tataattacc acagtaagca tcatgccaat gcttgccttt    120

tcttggagag taaatcccaa aagaatatct gccaacaagc agttgaccag gtccttgcag    180

ctaagagatt aaagcttgta gagtgtacta gaatggagct tttagaagat agatttattc    240

aactttttga tgaaatggag gactttttgc atggggaaat tgaaattcta agatggatgt    300

caggtgtggc ctggtacacc attttact                                       328


<210>  58
<211>  173
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(173)
<223>  LPV contig 1378

<400>  58
tttaattact ttaggaaaac atagagtgtc tgctgttaag catttttgtg tatcccaatg     60

tacttttagt tttattcatt gtaaagctgt tgttaaacct ctagagttat ataagacctt    120

aagtaaacca ccttttaagt tgttggaaga gaacaaaccg ggtgtatcca tgt           173


<210>  59
<211>  173
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(173)
<223>  IPPyV contig 1378

<400>  59
ttttattacc ttaggcaagc atagagtttc tgctgtaaaa catttttgtg ttgcacagtg     60

tacttttagt ttcattcatt gtaaagctgt tattaaacct ttagagcttt atagagcttt    120

aggtaaaccc ccttttaagt tgttggaaga aaacaagcct ggtgtatcca tgt           173


<210>  60
<211>  113
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(113)
<223>  LPV contig 1884

<400>  60
gtagtgccct gcacggggac acaccctgag gatgacccat agatgtactt tcctccctgg     60

tgcaaattaa ctagtgagga aattccaaca acttcagtct ttacagacac tgc           113


<210>  61
<211>  113
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(113)
<223>  IPPyV contig 1884

<400>  61
gtggtaccct gcactgggat agttcctgag gatgagccat agatatattt acccccctga     60

tgcagattta ctagagaact aatccccatg acttcagttt ttactgacac agc           113


<210>  62
<211>  240
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(240)
<223>  LPV contig 4636

<400>  62
cttctgttcc ctcaaatatt ctgacttctt ccacttgtcc tgagacccct tccattggtt     60

gtccctgaat ttggggcata agaccagaga agaagctatt tagaagagag ctgacaggat    120

aaggattttt aacaatcctt ttcctgaggg tcacattgaa atatctggga agccccctcc    180

aactttgggt ttcagaatag ttggtatgaa ctccagcaat atcagcacaa gacagaaaca    240


<210>  63
<211>  240
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(240)
<223>  IPPyV contig 4636

<400>  63
cttcagtgcc ctgataaatt ctgacttctt ccacttgccc tgaagttcct tccatgggtt     60

gtccctgaat ttgaggcata agaccagaga acaagctatt aaggagagag cttacaggat    120

aaggattttt aacaacccgt ttccttagag ttacattaaa atatctaggt aggcctctcc    180

agttttggga ttctgaataa ttagtgtgaa ttccaacaat atcaacagca gacaaaaaca    240


<210>  64
<211>  15
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(15)
<223>  LPV contig 4639

<400>  64
ttcttgatat tcaaa                                                      15


<210>  65
<211>  15
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(15)
<223>  IPPyV contig 4639

<400>  65
ttcctgatat tcaaa                                                      15


<210>  66
<211>  137
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(137)
<223>  LPV contig 4874

<400>  66
cattgttgag agctgttggg atagcactta ggagggaaaa ctgctctgtt gtaagtccag     60

taagagacaa ggcctctaga gtactaagtc cagcaagatc cactgcttct atttcaatga    120

gccaggctgc ctcagta                                                   137


<210>  67
<211>  137
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(137)
<223>  IPPyV contig 4874

<400>  67
cattgttcag ggcagttggt agagcactaa gtagagaaaa ttcttctgct gacagtccag     60

tcaaagttaa ggcctctaag gctcctaggc ctgctacatc tacagcttct atttcaatta    120

accaagctgc ttcagta                                                   137


<210>  68
<211>  288
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(288)
<223>  LPV contig 6390

<400>  68
ctctcctctg tttctatatt cttgtcttag ctggatggga tttctagcag gtagatacct     60

gtaataatct tggacactgg aataaatatg gacaggccca ctggtcaaag cccacctagc    120

attttcagca atttgagcca aggtgtgact cagttcattg gtacttctga cagccacagc    180

ccttgtagct tgaccaattt gcaaagtggc ctgtctcatc aaatgcctcc atacttctct    240

gcccacagca tgaaacaatg attcacccca gtcaagtaca gcattcag                 288


<210>  69
<211>  288
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(288)
<223>  IPPyV contig 6390

<400>  69
ctctcctcta cttctatact gttgtctcag ttgtatagga tttactgaag gcaaacctct     60

ataatattct tcaacactag aataaatatg aataggccca ttagttaggg cccaccttgc    120

attttctgca atttgagcaa gcatatgttg aaattcatta gtacccctta cagccaaagc    180

tctagaagta tatccaattt gctgagtagc ttgcctcata atatttctcc atatttccct    240

gccaacagca tgaaacagtg attctcccca gtctagagca gcattcag                 288


<210>  70
<211>  247
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(247)
<223>  LPV contig 6671

<400>  70
aggtaattaa atttattcca ttttattcac agccatggac caaacgctgt ctaaggagga     60

gagaaatgag cttatggatt tattgcaaat aactagagct gcatggggaa atctttctat    120

gatgaaaaaa gcctataaaa atgtctccaa gctctaccat cctgataaag gaggagattc    180

agctaaaatg cagcggctca atgaattatt tcaaagggtc caggttacct tgatggagat    240

aaggagt                                                              247


<210>  71
<211>  247
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(247)
<223>  IPPyV contig 6671

<400>  71
aggtagtaag acttatttta ctttttgcag agccatggat caaactctgt ctttggagga     60

gagaaatgag cttatggatt tgctgcaact tacaagagca gcatggggaa atttatctct    120

tatgaaaaag gcctacaaaa cagtttccaa aatttaccac cctgataaag gtggtaatcc    180

tgagaaaatg caaagattaa atgaattatt tcaaaagctg caagttacct tgctggaaat    240

aagaagt                                                              247


<210>  72
<211>  248
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(248)
<223>  LPV contig 7646

<400>  72
gtgtcacagg tcatgtcttc atttaggagg gggagtttaa taacagctac tgaataacaa     60

ggaagggtgc ctttgttggg ggtgtcagag gccttactga aagcagtatt tatagaatta    120

ctatatccat acaagtcctc agaaggaata ttatttccca ttctaggatt aagataggcc    180

tcaatttggg taatagcatc aggccctgtt cttacttcta gcacctctac tcctcctttt    240

actaggag                                                             248


<210>  73
<211>  248
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(248)
<223>  IPPyV contig 7646

<400>  73
gtgtcacagg tcatgtcttc atttagcatg ggtagcttaa ttacagccac tgagtaagta     60

gggagggtag tagcattagg gttatcacta gccttgctgg aggcaacatt tatatctgca    120

ctgtagccat acaattcatc agtagggtta ttgtttccca ttcttggatt taggtaggcc    180

tcaatttgag ttatagcatc tgggcctgtt ctaacttcta gaacttctac ccctcctttg    240

acaaggag                                                             248


<210>  74
<211>  140
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(140)
<223>  LPV contig 2412

<400>  74
atgcaattta tagtaataag actatgaata gttttttaat atatactact ttggagaaag     60

ccaggcaact gtataaaact gtggaaaaat ctaaaattgt agttgatttt aaggctagtt    120

tttcttatca ggatgaggaa                                                140


<210>  75
<211>  141
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(141)
<223>  IPPyV contig 2412

<400>  75
atgctatcta tagtaataag actatgaatt gctttttaat ttatactaca gttgaaaaaa     60

gtaagcagct ttacagaact gttgaaaaat caaaaattaa agtagatttt aaggctattt    120

tcttgtataa agatgatgga a                                              141


<210>  76
<211>  156
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(156)
<223>  LPV  contig  6783

<400>  76
cctgtaaaac tcccataata tctagtattt tcatttttag aggggtcagg gcaccacacc     60

tccactgggt actttccatc tttatccagc aaggctttgg cctttggatc taggccttgg    120

tttcctggtt tcatattttt aatagcaact acatca                              156


<210>  77
<211>  156
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(156)
<223>  IPPyV contig 6783

<400>  77
ccagtgaagc tcccatagta tcttgtattc tcatttttag aggggtctgg gctccaaact     60

tctacagggt actttccatc tttgtctagc aaagctttag cattaggatc caaggcctgg    120

tttactggtt tcatattttt aatagttacc atatca                              156


<210>  78
<211>  368
<212>  PRT
<213>  polyomavirus


<220>
<221>  MISC_FEATURE
<222>  (1)..(368)
<223>  LPV VP1

<400>  78

Met Ala Pro Gln Arg Lys Arg Gln Asp Gly Ala Cys Lys Lys Thr Cys 
1               5                   10                  15      


Pro Ile Pro Ala Pro Val Pro Arg Leu Leu Val Lys Gly Gly Val Glu 
            20                  25                  30          


Val Leu Glu Val Arg Thr Gly Pro Asp Ala Ile Thr Gln Ile Glu Ala 
        35                  40                  45              


Tyr Leu Asn Pro Arg Met Gly Asn Asn Ile Pro Ser Glu Asp Leu Tyr 
    50                  55                  60                  


Gly Tyr Ser Asn Ser Ile Asn Thr Ala Phe Ser Lys Ala Ser Asp Thr 
65                  70                  75                  80  


Pro Asn Lys Gly Thr Leu Pro Cys Tyr Ser Val Ala Val Ile Lys Leu 
                85                  90                  95      


Pro Leu Leu Asn Glu Asp Met Thr Cys Asp Thr Ile Leu Met Trp Glu 
            100                 105                 110         


Ala Val Ser Val Lys Thr Glu Val Val Gly Ile Ser Ser Leu Val Asn 
        115                 120                 125             


Leu His Gln Gly Gly Lys Tyr Ile Tyr Gly Ser Ser Ser Gly Cys Val 
    130                 135                 140                 


Pro Val Gln Gly Thr Thr Tyr His Met Phe Ala Val Gly Gly Glu Pro 
145                 150                 155                 160 


Leu Glu Leu Gln Gly Leu Val Ala Ser Ser Thr Ala Thr Tyr Pro Asp 
                165                 170                 175     


Asp Val Val Ala Ile Lys Asn Met Lys Pro Gly Asn Gln Gly Leu Asp 
            180                 185                 190         


Pro Lys Ala Lys Ala Leu Leu Asp Lys Asp Gly Lys Tyr Pro Val Glu 
        195                 200                 205             


Val Trp Cys Pro Asp Pro Ser Lys Asn Glu Asn Thr Arg Tyr Tyr Gly 
    210                 215                 220                 


Ser Phe Thr Gly Gly Ala Thr Thr Pro Pro Val Met Gln Phe Thr Asn 
225                 230                 235                 240 


Ser Val Thr Thr Val Leu Leu Asp Glu Asn Gly Val Gly Pro Leu Cys 
                245                 250                 255     


Lys Gly Asp Lys Leu Phe Leu Ser Cys Ala Asp Ile Ala Gly Val His 
            260                 265                 270         


Thr Asn Tyr Ser Glu Thr Gln Ser Trp Arg Gly Leu Pro Arg Tyr Phe 
        275                 280                 285             


Asn Val Thr Leu Arg Lys Arg Ile Val Lys Asn Pro Tyr Pro Val Ser 
    290                 295                 300                 


Ser Leu Leu Asn Ser Phe Phe Ser Gly Leu Met Pro Gln Ile Gln Gly 
305                 310                 315                 320 


Gln Pro Met Glu Gly Val Ser Gly Gln Val Glu Glu Val Arg Ile Phe 
                325                 330                 335     


Glu Gly Thr Glu Gly Leu Pro Gly Asp Pro Asp Leu Asn Arg Tyr Val 
            340                 345                 350         


Asp Lys Phe Cys Gln Asn Gln Thr Val Leu Pro Val Ser Asn Asp Met 
        355                 360                 365             


<210>  79
<211>  1107
<212>  DNA
<213>  polyomavirus


<220>
<221>  misc_feature
<222>  (1)..(1107)
<223>  LPV VP1

<400>  79
tcacatatca tttgagacag ggagaacagt ctggttctga caaaatttat caacatatct     60

attaaggtca gggtcccctg ggagtccttc tgttccctca aatattctga cttcttccac    120

ttgtcctgag accccttcca ttggttgtcc ctgaatttgg ggcataagac cagagaagaa    180

gctatttaga agagagctga caggataagg atttttaaca atccttttcc tgagggtcac    240

attgaaatat ctgggaagcc ccctccaact ttgggtttca gaatagttgg tatgaactcc    300

agcaatatca gcacaagaca gaaacagttt gtccccttta caaagaggcc caactccatt    360

ttcatccagc agcacagttg tgacagaatt agtgaactgc ataactggtg gggtggtggc    420

tccccctgta aaactcccat aatatctagt attttcattt ttagaggggt cagggcacca    480

cacctccact gggtactttc catctttatc cagcaaggct ttggcctttg gatctaggcc    540

ttggtttcct ggtttcatat ttttaatagc aactacatca tcaggatagg tagctgtaga    600

gctagcaact aggccttgga gttccagggg ctctcctcca acagcaaaca tgtgataggt    660

agtgccctgc acggggacac accctgagga tgacccatag atgtactttc ctccctggtg    720

caaattaact agtgaggaaa ttccaacaac ttcagtcttt acagacactg cttcccacat    780

caaaatggtg tcacaggtca tgtcttcatt taggaggggg agtttaataa cagctactga    840

ataacaagga agggtgcctt tgttgggggt gtcagaggcc ttactgaaag cagtatttat    900

agaattacta tatccataca agtcctcaga aggaatatta tttcccattc taggattaag    960

ataggcctca atttgggtaa tagcatcagg ccctgttctt acttctagca cctctactcc   1020

tccttttact aggagcctgg ggacgggagc gggaataggg catgtttttt tgcatgctcc   1080

gtcttgcctt tttctttgag gggccat                                       1107


<210>  80
<211>  423
<212>  PRT
<213>  polyomavirus


<220>
<221>  MISC_FEATURE
<222>  (1)..(423)
<223>  LPV  - VP1

<400>  80

Met Ala Pro Lys Arg Lys Ala Ser Ser Thr Cys Lys Thr Pro Lys Arg 
1               5                   10                  15      


Gln Cys Ile Pro Lys Pro Gly Cys Cys Pro Asn Val Ala Ser Val Pro 
            20                  25                  30          


Lys Leu Leu Val Lys Gly Gly Val Glu Val Leu Ser Val Val Thr Gly 
        35                  40                  45              


Glu Asp Ser Ile Thr Gln Ile Glu Leu Tyr Leu Asn Pro Arg Met Gly 
    50                  55                  60                  


Val Asn Ser Pro Asp Leu Pro Thr Thr Ser Asn Trp Tyr Thr Tyr Thr 
65                  70                  75                  80  


Tyr Asp Leu Gln Pro Lys Gly Ser Ser Pro Asp Gln Pro Ile Lys Glu 
                85                  90                  95      


Asn Leu Pro Ala Tyr Ser Val Ala Arg Val Ser Leu Pro Met Leu Asn 
            100                 105                 110         


Glu Asp Ile Thr Cys Asp Thr Leu Gln Met Trp Glu Ala Ile Ser Val 
        115                 120                 125             


Lys Thr Glu Val Val Gly Ile Ser Ser Leu Ile Asn Val His Tyr Trp 
    130                 135                 140                 


Asp Met Lys Arg Val His Asp Tyr Gly Ala Gly Ile Pro Val Ser Gly 
145                 150                 155                 160 


Val Asn Tyr His Met Phe Ala Ile Gly Gly Glu Pro Leu Asp Leu Gln 
                165                 170                 175     


Gly Leu Val Leu Asp Tyr Gln Thr Glu Tyr Pro Lys Thr Thr Asn Gly 
            180                 185                 190         


Gly Pro Ile Thr Ile Glu Thr Val Leu Gly Arg Lys Met Thr Pro Lys 
        195                 200                 205             


Asn Gln Gly Leu Asp Pro Gln Ala Lys Ala Lys Leu Asp Lys Asp Gly 
    210                 215                 220                 


Asn Tyr Pro Ile Glu Val Trp Cys Pro Asp Pro Ser Lys Asn Glu Asn 
225                 230                 235                 240 


Ser Arg Tyr Tyr Gly Ser Ile Gln Thr Gly Ser Gln Thr Pro Thr Val 
                245                 250                 255     


Leu Gln Phe Ser Asn Thr Leu Thr Thr Val Leu Leu Asp Glu Asn Gly 
            260                 265                 270         


Val Gly Pro Leu Cys Lys Gly Asp Gly Leu Phe Ile Ser Cys Ala His 
        275                 280                 285             


Ile Val Gly Phe Leu Phe Lys Thr Ser Gly Lys Met Ala Leu His Gly 
    290                 295                 300                 


Leu Pro Arg Tyr Phe Asn Val Thr Leu Arg Lys Ile Trp Val Lys Asn 
305                 310                 315                 320 


Pro Tyr Pro Val Val Asn Leu Ile Asn Ser Leu Phe Ser Asn Leu Met 
                325                 330                 335     


Pro Lys Val Ser Gly Gln Pro Met Glu Gly Lys Asp Asn Gln Val Glu 
            340                 345                 350         


Glu Val Arg Ile Tyr Glu Gly Ser Glu Gln Leu Pro Gly Asn Pro Asp 
        355                 360                 365             


Ile Val Arg Phe Leu Asp Lys Phe Gly Gln Glu Lys Thr Val Tyr Pro 
    370                 375                 380                 


Lys Pro Ser Val Ala Pro Ala Ala Val Thr Phe Gln Ser Asn Gln Gln 
385                 390                 395                 400 


Asp Lys Gly Lys Ala Pro Leu Lys Gly Pro Gln Lys Ala Ser Gln Lys 
                405                 410                 415     


Glu Ser Gln Thr Gln Gln Leu 
            420             


<210>  81
<211>  697
<212>  PRT
<213>  polyomavirus

<400>  81

Met Asp Gln Thr Leu Ser Lys Glu Glu Arg Asn Glu Leu Met Asp Leu 
1               5                   10                  15      


Leu Gln Ile Thr Arg Ala Ala Trp Gly Asn Leu Ser Met Met Lys Lys 
            20                  25                  30          


Ala Tyr Lys Asn Val Ser Lys Leu Tyr His Pro Asp Lys Gly Gly Asp 
        35                  40                  45              


Ser Ala Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Arg Val Gln Val 
    50                  55                  60                  


Thr Leu Met Glu Ile Arg Ser Gln Cys Gly Ser Ser Ser Ser Gln Gly 
65                  70                  75                  80  


Tyr Phe Ser Glu Asp Phe Tyr Phe Gly Pro Thr Thr Phe Gln Tyr Ser 
                85                  90                  95      


Pro Met Asp Arg Asp Ala Val Arg Glu Asp Leu Pro Asn Pro Gly Glu 
            100                 105                 110         


Gly Ser Trp Gly Lys Trp Trp Arg Glu Phe Val Asn Arg Gln Cys Cys 
        115                 120                 125             


Asp Asp Leu Phe Cys Ser Glu Thr Met Ser Ser Ser Ser Asp Glu Asp 
    130                 135                 140                 


Thr Pro Pro Ala Ala Gln Pro Pro Pro Pro Pro Ala Pro Ser Pro Glu 
145                 150                 155                 160 


Glu Glu Asp Glu Ile Glu Phe Val Glu Glu Thr Pro Ser Ser Cys Asp 
                165                 170                 175     


Gly Ser Ser Ser Gln Ser Ser Tyr Thr Cys Thr Pro Pro Lys Arg Lys 
            180                 185                 190         


Lys Thr Glu Glu Lys Lys Pro Asp Asp Phe Pro Val Cys Leu Tyr Ser 
        195                 200                 205             


Phe Leu Ser His Ala Ile Tyr Ser Asn Lys Thr Met Asn Ser Phe Leu 
    210                 215                 220                 


Ile Tyr Thr Thr Leu Glu Lys Ala Arg Gln Leu Tyr Lys Thr Val Glu 
225                 230                 235                 240 


Lys Ser Lys Ile Val Val Asp Phe Lys Ala Ser Phe Ser Tyr Gln Asp 
                245                 250                 255     


Glu Glu Gly Glu Gly Cys Leu Leu Phe Leu Ile Thr Leu Gly Lys His 
            260                 265                 270         


Arg Val Ser Ala Val Lys His Phe Cys Val Ser Gln Cys Thr Phe Ser 
        275                 280                 285             


Phe Ile His Cys Lys Ala Val Val Lys Pro Leu Glu Leu Tyr Lys Thr 
    290                 295                 300                 


Leu Ser Lys Pro Pro Phe Lys Leu Leu Glu Glu Asn Lys Pro Gly Val 
305                 310                 315                 320 


Ser Met Phe Glu Phe Gln Glu Glu Lys Glu Gln Ser Val Asn Trp Gln 
                325                 330                 335     


Glu Ile Cys Asn Phe Ala Asn Glu Ala Asn Ile Ser Asp Val Leu Leu 
            340                 345                 350         


Leu Leu Gly Ile Tyr Ile Asp Phe Ala Val Glu Pro Gly Lys Cys Gly 
        355                 360                 365             


Lys Cys Glu Lys Lys Gln His Lys Phe His Tyr Asn Tyr His Lys Ala 
    370                 375                 380                 


His His Ala Asn Ala Cys Leu Phe Leu Glu Ser Arg Ala Gln Lys Asn 
385                 390                 395                 400 


Ile Cys Gln Gln Ala Val Asp Gln Val Leu Ala Ala Lys Arg Leu Lys 
                405                 410                 415     


Leu Val Glu Cys Ser Arg Ile Glu Leu Leu Glu Glu Arg Phe Leu Gln 
            420                 425                 430         


Leu Phe Asp Glu Met Asp Asp Phe Leu His Gly Glu Ile Glu Ile Leu 
        435                 440                 445             


Arg Trp Met Ala Gly Val Ala Trp Tyr Thr Ile Leu Leu Asp Asn Ser 
    450                 455                 460                 


Trp Asp Val Phe Gln Asn Ile Leu Gln Leu Ile Thr Thr Ser Gln Pro 
465                 470                 475                 480 


Lys Lys Arg Asn Val Leu Ile Lys Gly Pro Ile Asn Ser Gly Lys Thr 
                485                 490                 495     


Thr Leu Ala Ser Ala Phe Met His Phe Phe Asp Gly Lys Ala Leu Asn 
            500                 505                 510         


Ile Asn Cys Pro Ala Asp Lys Leu Ser Phe Glu Leu Gly Cys Ala Ile 
        515                 520                 525             


Asp Gln Phe Cys Val Leu Leu Asp Asp Val Lys Gly Gln Ile Thr Leu 
    530                 535                 540                 


Asn Lys His Leu Gln Pro Gly Gln Gly Val Asn Asn Leu Asp Asn Leu 
545                 550                 555                 560 


Arg Asp His Leu Asp Gly Thr Ile Lys Val Asn Leu Glu Lys Lys His 
                565                 570                 575     


Val Asn Lys Arg Ser Gln Ile Phe Pro Pro Val Ile Met Thr Met Asn 
            580                 585                 590         


Glu Tyr Leu Leu Pro Pro Thr Ile Gly Val Arg Phe Ala Leu His Leu 
        595                 600                 605             


His Leu Lys Pro Lys Ala Tyr Leu Lys Gln Ser Leu Glu Lys Ser Asp 
    610                 615                 620                 


Leu Val Ala Lys Arg Ile Leu Asn Ser Gly Tyr Thr Ile Leu Leu Leu 
625                 630                 635                 640 


Leu Leu Trp Tyr Asn Pro Val Asp Ser Phe Thr Pro Lys Val Gln Glu 
                645                 650                 655     


Lys Val Val Gln Trp Lys Glu Thr Leu Glu Lys Tyr Val Ser Ile Thr 
            660                 665                 670         


Gln Phe Gly Asn Ile Gln Gln Asn Ile Ile Asp Gly Lys Asp Pro Leu 
        675                 680                 685             


His Gly Ile Val Ile Glu Glu Gln Met 
    690                 695         


<210>  82
<211>  5028
<212>  DNA
<213>  polyomavirus 

<400>  82
ccccttgcct ccttctcttg ttgcaacaaa gagagaggct ttggaggctt ttccaaaact     60

cattaaggta agaagttctc cacctatttg aaacttaatt aacttgattc tcaggtagta    120

agacttattt tactttttgc agagccatgg atcaaactct gtctttggag gagagaaatg    180

agcttatgga tttgctgcaa cttacaagag cagcatgggg aaatttatct cttatgaaaa    240

aggcctacaa aacagtttcc aaaatttacc accctgataa aggtggtaat cctgagaaaa    300

tgcaaagatt aaatgaatta tttcaaaagc tgcaagttac cttgctggaa ataagaagta    360

attgtggatc ctcctcttct caggtagctt ggtacttttg ggatgagaat tttagaacac    420

taggtgcttt tctaggagaa aaatttaatc aaagaattat tggtggatat cctgattgca    480

ttacctataa taagcccagt tgttgctgca ttgtatgttt attaaagcag cagcacaaaa    540

gtacaaaaat aaataaaaaa aagccttgct tagtatgggg tgaatgcttt tgctacaagt    600

gctacttact ttggtttgga tttcctgagg attttacatc ttttaactac tggaccttat    660

taatgagaaa tatggattta agtttgctgc gcctctggac tgagcttgga ttctaatgta    720

agtatttttt tttttaggga tactacagtg attctccata ctttactgaa actccatttt    780

cctactgtga aagaaaaaat gaagatccag aaggggggtc atggggtaaa tggtggaggg    840

agtttgttaa caaagaatat gatgatttat tttgttcaga gactatatca tctagtgatg    900

atgaaaataa tcctggacct tcagcccctc caccctcttc tgcttctgcc tctgaagacc    960

ctgatcctga ggaagaagct ggatcatccc agagttcatt tacctgcacg ccccccaaaa   1020

gaaagaagcc tgaacctaat actccagagg actttcctat gtgtttgtat tcttttttaa   1080

gtcatgctat ctatagtaat aagactatga attgcttttt aatttatact acagttgaaa   1140

aaagtaagca gctttacaga actgttgaaa aatcaaaaat taaagtagat tttaaggcta   1200

ttttcttgta taaagatgat ggaattgaag gaggcctgtt atattttatt accttaggca   1260

agcatagagt ttctgctgta aaacattttt gtgttgcaca gtgtactttt agtttcattc   1320

attgtaaagc tgttattaaa cctttagagc tttatagagc tttaggtaaa ccccctttta   1380

agttgttgga agaaaacaag cctggtgtat ccatgtttga ctttcaggag gaaaaagaac   1440

aggctgtaaa ttggcaggag atttgtaatt atgcggttga agcaaaaatt actgatgtat   1500

tactgttgct tggcatctac ctagattttg cagtggaacc tggcacttgc tctaaatgtg   1560

aaaaaaagag tcataaattc cattataatt accacagtaa gcatcatgcc aatgcttgcc   1620

ttttcttgga gagtaaatcc caaaagaata tctgccaaca agcagttgac caggtccttg   1680

cagctaagag attaaagctt gtagagtgta ctagaatgga gcttttagaa gatagattta   1740

ttcaactttt tgatgaaatg gaggactttt tgcatgggga aattgaaatt ctaagatgga   1800

tgtcaggtgt ggcctggtac accattttac ttgacaactc atgggatgtt tttcaaaaaa   1860

ttttgcagct ggtaaccaca agccaaccaa aaaagaggaa catactcttt aaaggcccta   1920

taaatagtgg caaaaccacc ttagcttctg ctttcatgca cttttttgat ggtaaagctt   1980

tgaatattaa ctgcccagca gaaaaattat cttttgagtt aggctgtgct attgatcaat   2040

tttgtgtttt gcttgatgat gtgaagggcc agataacttt aaacaaacat cttcaacctg   2100

ggcagggagt taataatttg gataatttaa gagatcactt agatggtact attaaagtta   2160

atctggaaaa aaaacatgtg aataaaagaa gccagatatt tcctcctgta attatgacaa   2220

tgaatgagta tttactccca cccacagtgg gagttagatt tgctttgcac atccattttc   2280

attgtaagac ctacctgaag cagagtttag aaaaaagtga cttaattgaa aaaagaattc   2340

ttaactctgg ttacacaatc ttgctgttac ttttatggta caaccctgtt gattctttta   2400

ctccaaaagt ccaggaatat gttgtaaaat ggaaagagat tttagagaga catgtatcta   2460

ttactcagtt tggaaatatc cagcaaaaca ttcttgatgg taaagatccc ctgcatggaa   2520

ttgttattga agaacaagca taacaatttg tacttttctt cttcagattt attcatggtt   2580

ttgttaatac aataaagctt tacaatgcaa ccagcctcat tgatcatttg agcgaggggg   2640

gacagtttga ttctgacaaa atttatcaac atatctatca agatcagggt ccccgggtag   2700

gccttcagtg ccctgataaa ttctgacttc ttccacttgc cctgaagttc cttccatggg   2760

ttgtccctga atttgaggca taagaccaga gaacaagcta ttaaggagag agcttacagg   2820

ataaggattt ttaacaaccc gtttccttag agttacatta aaatatctag gtaggcctct   2880

ccagttttgg gattctgaat aattagtgtg aattccaaca atatcaacag cagacaaaaa   2940

cagcttgtcc cctttacaaa gaggccccac tccattttca tccaatagca ccgtggttac   3000

agagttagta aactgcataa cagggggggt tgtggctcct ccagtgaagc tcccatagta   3060

tcttgtattc tcatttttag aggggtctgg gctccaaact tctacagggt actttccatc   3120

tttgtctagc aaagctttag cattaggatc caaggcctgg tttactggtt tcatattttt   3180

aatagttacc atatcagtag gataggtagt agtagagcta gcaactaggc cttgaagttc   3240

aagaggctct ccacccactg aaaacatgtg gagagtggta ccctgcactg ggatagttcc   3300

tgaggatgag ccatagatat atttaccccc ctgatgcaga tttactagag aactaatccc   3360

catgacttca gtttttactg acacagcctc ccacattaga agtgtgtcac aggtcatgtc   3420

ttcatttagc atgggtagct taattacagc cactgagtaa gtagggaggg tagtagcatt   3480

agggttatca ctagccttgc tggaggcaac atttatatct gcactgtagc catacaattc   3540

atcagtaggg ttattgtttc ccattcttgg atttaggtag gcctcaattt gagttatagc   3600

atctgggcct gttctaactt ctagaacttc tacccctcct ttgacaagga gtttgggaac   3660

gggagcgggt gttggacagg ttttttttac aggacatgct ccgcactctt gcctttttct   3720

ttggggggcc atattcttct ttttccaatt tactcagctc tttctcccag gttggagtta   3780

tatcaccata caaacctaga attagaggaa gcatccaatc ttgagatact ctttgatttg   3840

cccctcctgg agcagcataa tgttgtacat agtgtccaga tctaggctct gaacccccta   3900

tctcccgcct cagcctaact tgttcctgat attcaaattg ttccctagtt gggggtagct   3960

ctcctctact tctatactgt tgtctcagtt gtataggatt tactgaaggc aaacctctat   4020

aatattcttc aacactagaa taaatatgaa taggcccatt agttagggcc caccttgcat   4080

tttctgcaat ttgagcaagc atatgttgaa attcattagt accccttaca gccaaagctc   4140

tagaagtata tccaatttgc tgagtagctt gcctcataat atttctccat atttccctgc   4200

caacagcatg aaacagtgat tctccccagt ctagagcagc attcagatag taactaaaag   4260

aagacaagcc tggaaacaga tagtccactt gaggaaacca aggagtgaga gccatactaa   4320

caagtggtac ttctttggaa tatccaaaag ttgttactcc tgcagcaacc acagcactgg   4380

cacctgtaac agtttgaaaa aagattccta ttcctatggc attgttcagg gcagttggta   4440

gagcactaag tagagaaaat tcttctgctg acagtccagt caaagttaag gcctctaagg   4500

ctcctaggcc tgctacatct acagcttcta tttcaattaa ccaagctgct tcagtagtag   4560

cagcagctat agcttcccca gacaatattg catcaacagt aaatccagta cttaaactta   4620

attgttcagc cagttcaaaa atatccaaca atatagttaa aacccccccc atatcttacc   4680

caagttcaaa attggcgcgt ttagtttagg cgggcttctt ctctgttgac cttagatggc   4740

aaaatgattt cacttccccc ttagctactg gtatctagag gggttgctaa gcgccaccta   4800

gcaacggaaa ccgcaatgca cttgtttgtc acacaccgga atgtcaccaa aaagtcccca   4860

ggcagtcaag tggagcaggt agataccaca gataccacag tttcctctag agttgattct   4920

gcaaaaataa cctgtcattt agttcctcaa tttgcaaagt tatctccctg tcactcaaaa   4980

tcactatggc aacacaggtt tttttttgat agtataagag gccagggg                5028


<210>  83
<211>  2043
<212>  DNA
<213>  polyomavirus


<220>
<221>  CDS
<222>  (1)..(2043)

<220>
<221>  misc_feature
<222>  (1)..(2043)
<223>  Large T DNA


<400>  83
atg gat caa act ctg tct ttg gag gag aga aat gag ctt atg gat ttg       48
Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu         
1               5                   10                  15              

ctg caa ctt aca aga gca gca tgg gga aat tta tct ctt atg aaa aag       96
Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys         
            20                  25                  30                  

gcc tac aaa aca gtt tcc aaa att tac cac cct gat aaa ggt ggt aat      144
Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn         
        35                  40                  45                      

cct gag aaa atg caa aga tta aat gaa tta ttt caa aag ctg caa gtt      192
Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val         
    50                  55                  60                          

acc ttg ctg gaa ata aga agt aat tgt gga tcc tcc tct tct cag gga      240
Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Gly         
65                  70                  75                  80          

tac tac agt gat tct cca tac ttt act gaa act cca ttt tcc tac tgt      288
Tyr Tyr Ser Asp Ser Pro Tyr Phe Thr Glu Thr Pro Phe Ser Tyr Cys         
                85                  90                  95              

gaa aga aaa aat gaa gat cca gaa ggg ggg tca tgg ggt aaa tgg tgg      336
Glu Arg Lys Asn Glu Asp Pro Glu Gly Gly Ser Trp Gly Lys Trp Trp         
            100                 105                 110                 

agg gag ttt gtt aac aaa gaa tat gat gat tta ttt tgt tca gag act      384
Arg Glu Phe Val Asn Lys Glu Tyr Asp Asp Leu Phe Cys Ser Glu Thr         
        115                 120                 125                     

ata tca tct agt gat gat gaa aat aat cct gga cct tca gcc cct cca      432
Ile Ser Ser Ser Asp Asp Glu Asn Asn Pro Gly Pro Ser Ala Pro Pro         
    130                 135                 140                         

ccc tct tct gct tct gcc tct gaa gac cct gat cct gag gaa gaa gct      480
Pro Ser Ser Ala Ser Ala Ser Glu Asp Pro Asp Pro Glu Glu Glu Ala         
145                 150                 155                 160         

gga tca tcc cag agt tca ttt acc tgc acg ccc ccc aaa aga aag aag      528
Gly Ser Ser Gln Ser Ser Phe Thr Cys Thr Pro Pro Lys Arg Lys Lys         
                165                 170                 175             

cct gaa cct aat act cca gag gac ttt cct atg tgt ttg tat tct ttt      576
Pro Glu Pro Asn Thr Pro Glu Asp Phe Pro Met Cys Leu Tyr Ser Phe         
            180                 185                 190                 

tta agt cat gct atc tat agt aat aag act atg aat tgc ttt tta att      624
Leu Ser His Ala Ile Tyr Ser Asn Lys Thr Met Asn Cys Phe Leu Ile         
        195                 200                 205                     

tat act aca gtt gaa aaa agt aag cag ctt tac aga act gtt gaa aaa      672
Tyr Thr Thr Val Glu Lys Ser Lys Gln Leu Tyr Arg Thr Val Glu Lys         
    210                 215                 220                         

tca aaa att aaa gta gat ttt aag gct att ttc ttg tat aaa gat gat      720
Ser Lys Ile Lys Val Asp Phe Lys Ala Ile Phe Leu Tyr Lys Asp Asp         
225                 230                 235                 240         

gga att gaa gga ggc ctg tta tat ttt att acc tta ggc aag cat aga      768
Gly Ile Glu Gly Gly Leu Leu Tyr Phe Ile Thr Leu Gly Lys His Arg         
                245                 250                 255             

gtt tct gct gta aaa cat ttt tgt gtt gca cag tgt act ttt agt ttc      816
Val Ser Ala Val Lys His Phe Cys Val Ala Gln Cys Thr Phe Ser Phe         
            260                 265                 270                 

att cat tgt aaa gct gtt att aaa cct tta gag ctt tat aga gct tta      864
Ile His Cys Lys Ala Val Ile Lys Pro Leu Glu Leu Tyr Arg Ala Leu         
        275                 280                 285                     

ggt aaa ccc cct ttt aag ttg ttg gaa gaa aac aag cct ggt gta tcc      912
Gly Lys Pro Pro Phe Lys Leu Leu Glu Glu Asn Lys Pro Gly Val Ser         
    290                 295                 300                         

atg ttt gac ttt cag gag gaa aaa gaa cag gct gta aat tgg cag gag      960
Met Phe Asp Phe Gln Glu Glu Lys Glu Gln Ala Val Asn Trp Gln Glu         
305                 310                 315                 320         

att tgt aat tat gcg gtt gaa gca aaa att act gat gta tta ctg ttg     1008
Ile Cys Asn Tyr Ala Val Glu Ala Lys Ile Thr Asp Val Leu Leu Leu         
                325                 330                 335             

ctt ggc atc tac cta gat ttt gca gtg gaa cct ggc act tgc tct aaa     1056
Leu Gly Ile Tyr Leu Asp Phe Ala Val Glu Pro Gly Thr Cys Ser Lys         
            340                 345                 350                 

tgt gaa aaa aag agt cat aaa ttc cat tat aat tac cac agt aag cat     1104
Cys Glu Lys Lys Ser His Lys Phe His Tyr Asn Tyr His Ser Lys His         
        355                 360                 365                     

cat gcc aat gct tgc ctt ttc ttg gag agt aaa tcc caa aag aat atc     1152
His Ala Asn Ala Cys Leu Phe Leu Glu Ser Lys Ser Gln Lys Asn Ile         
    370                 375                 380                         

tgc caa caa gca gtt gac cag gtc ctt gca gct aag aga tta aag ctt     1200
Cys Gln Gln Ala Val Asp Gln Val Leu Ala Ala Lys Arg Leu Lys Leu         
385                 390                 395                 400         

gta gag tgt act aga atg gag ctt tta gaa gat aga ttt att caa ctt     1248
Val Glu Cys Thr Arg Met Glu Leu Leu Glu Asp Arg Phe Ile Gln Leu         
                405                 410                 415             

ttt gat gaa atg gag gac ttt ttg cat ggg gaa att gaa att cta aga     1296
Phe Asp Glu Met Glu Asp Phe Leu His Gly Glu Ile Glu Ile Leu Arg         
            420                 425                 430                 

tgg atg tca ggt gtg gcc tgg tac acc att tta ctt gac aac tca tgg     1344
Trp Met Ser Gly Val Ala Trp Tyr Thr Ile Leu Leu Asp Asn Ser Trp         
        435                 440                 445                     

gat gtt ttt caa aaa att ttg cag ctg gta acc aca agc caa cca aaa     1392
Asp Val Phe Gln Lys Ile Leu Gln Leu Val Thr Thr Ser Gln Pro Lys         
    450                 455                 460                         

aag agg aac ata ctc ttt aaa ggc cct ata aat agt ggc aaa acc acc     1440
Lys Arg Asn Ile Leu Phe Lys Gly Pro Ile Asn Ser Gly Lys Thr Thr         
465                 470                 475                 480         

tta gct tct gct ttc atg cac ttt ttt gat ggt aaa gct ttg aat att     1488
Leu Ala Ser Ala Phe Met His Phe Phe Asp Gly Lys Ala Leu Asn Ile         
                485                 490                 495             

aac tgc cca gca gaa aaa tta tct ttt gag tta ggc tgt gct att gat     1536
Asn Cys Pro Ala Glu Lys Leu Ser Phe Glu Leu Gly Cys Ala Ile Asp         
            500                 505                 510                 

caa ttt tgt gtt ttg ctt gat gat gtg aag ggc cag ata act tta aac     1584
Gln Phe Cys Val Leu Leu Asp Asp Val Lys Gly Gln Ile Thr Leu Asn         
        515                 520                 525                     

aaa cat ctt caa cct ggg cag gga gtt aat aat ttg gat aat tta aga     1632
Lys His Leu Gln Pro Gly Gln Gly Val Asn Asn Leu Asp Asn Leu Arg         
    530                 535                 540                         

gat cac tta gat ggt act att aaa gtt aat ctg gaa aaa aaa cat gtg     1680
Asp His Leu Asp Gly Thr Ile Lys Val Asn Leu Glu Lys Lys His Val         
545                 550                 555                 560         

aat aaa aga agc cag ata ttt cct cct gta att atg aca atg aat gag     1728
Asn Lys Arg Ser Gln Ile Phe Pro Pro Val Ile Met Thr Met Asn Glu         
                565                 570                 575             

tat tta ctc cca ccc aca gtg gga gtt aga ttt gct ttg cac atc cat     1776
Tyr Leu Leu Pro Pro Thr Val Gly Val Arg Phe Ala Leu His Ile His         
            580                 585                 590                 

ttt cat tgt aag acc tac ctg aag cag agt tta gaa aaa agt gac tta     1824
Phe His Cys Lys Thr Tyr Leu Lys Gln Ser Leu Glu Lys Ser Asp Leu         
        595                 600                 605                     

att gaa aaa aga att ctt aac tct ggt tac aca atc ttg ctg tta ctt     1872
Ile Glu Lys Arg Ile Leu Asn Ser Gly Tyr Thr Ile Leu Leu Leu Leu         
    610                 615                 620                         

tta tgg tac aac cct gtt gat tct ttt act cca aaa gtc cag gaa tat     1920
Leu Trp Tyr Asn Pro Val Asp Ser Phe Thr Pro Lys Val Gln Glu Tyr         
625                 630                 635                 640         

gtt gta aaa tgg aaa gag att tta gag aga cat gta tct att act cag     1968
Val Val Lys Trp Lys Glu Ile Leu Glu Arg His Val Ser Ile Thr Gln         
                645                 650                 655             

ttt gga aat atc cag caa aac att ctt gat ggt aaa gat ccc ctg cat     2016
Phe Gly Asn Ile Gln Gln Asn Ile Leu Asp Gly Lys Asp Pro Leu His         
            660                 665                 670                 

gga att gtt att gaa gaa caa gca taa                                 2043
Gly Ile Val Ile Glu Glu Gln Ala                                         
        675                 680                                         


<210>  84
<211>  680
<212>  PRT
<213>  polyomavirus     


<220>
<221>  MISC_FEATURE
<222>  (1)..(680)
<223>  Large T antigen


<400>  84

Met Asp Gln Thr Leu Ser Leu Glu Glu Arg Asn Glu Leu Met Asp Leu 
1               5                   10                  15      


Leu Gln Leu Thr Arg Ala Ala Trp Gly Asn Leu Ser Leu Met Lys Lys 
            20                  25                  30          


Ala Tyr Lys Thr Val Ser Lys Ile Tyr His Pro Asp Lys Gly Gly Asn 
        35                  40                  45              


Pro Glu Lys Met Gln Arg Leu Asn Glu Leu Phe Gln Lys Leu Gln Val 
    50                  55                  60                  


Thr Leu Leu Glu Ile Arg Ser Asn Cys Gly Ser Ser Ser Ser Gln Gly 
65                  70                  75                  80  


Tyr Tyr Ser Asp Ser Pro Tyr Phe Thr Glu Thr Pro Phe Ser Tyr Cys 
                85                  90                  95      


Glu Arg Lys Asn Glu Asp Pro Glu Gly Gly Ser Trp Gly Lys Trp Trp 
            100                 105                 110         


Arg Glu Phe Val Asn Lys Glu Tyr Asp Asp Leu Phe Cys Ser Glu Thr 
        115                 120                 125             


Ile Ser Ser Ser Asp Asp Glu Asn Asn Pro Gly Pro Ser Ala Pro Pro 
    130                 135                 140                 


Pro Ser Ser Ala Ser Ala Ser Glu Asp Pro Asp Pro Glu Glu Glu Ala 
145                 150                 155                 160 


Gly Ser Ser Gln Ser Ser Phe Thr Cys Thr Pro Pro Lys Arg Lys Lys 
                165                 170                 175     


Pro Glu Pro Asn Thr Pro Glu Asp Phe Pro Met Cys Leu Tyr Ser Phe 
            180                 185                 190         


Leu Ser His Ala Ile Tyr Ser Asn Lys Thr Met Asn Cys Phe Leu Ile 
        195                 200                 205             


Tyr Thr Thr Val Glu Lys Ser Lys Gln Leu Tyr Arg Thr Val Glu Lys 
    210                 215                 220                 


Ser Lys Ile Lys Val Asp Phe Lys Ala Ile Phe Leu Tyr Lys Asp Asp 
225                 230                 235                 240 


Gly Ile Glu Gly Gly Leu Leu Tyr Phe Ile Thr Leu Gly Lys His Arg 
                245                 250                 255     


Val Ser Ala Val Lys His Phe Cys Val Ala Gln Cys Thr Phe Ser Phe 
            260                 265                 270         


Ile His Cys Lys Ala Val Ile Lys Pro Leu Glu Leu Tyr Arg Ala Leu 
        275                 280                 285             


Gly Lys Pro Pro Phe Lys Leu Leu Glu Glu Asn Lys Pro Gly Val Ser 
    290                 295                 300                 


Met Phe Asp Phe Gln Glu Glu Lys Glu Gln Ala Val Asn Trp Gln Glu 
305                 310                 315                 320 


Ile Cys Asn Tyr Ala Val Glu Ala Lys Ile Thr Asp Val Leu Leu Leu 
                325                 330                 335     


Leu Gly Ile Tyr Leu Asp Phe Ala Val Glu Pro Gly Thr Cys Ser Lys 
            340                 345                 350         


Cys Glu Lys Lys Ser His Lys Phe His Tyr Asn Tyr His Ser Lys His 
        355                 360                 365             


His Ala Asn Ala Cys Leu Phe Leu Glu Ser Lys Ser Gln Lys Asn Ile 
    370                 375                 380                 


Cys Gln Gln Ala Val Asp Gln Val Leu Ala Ala Lys Arg Leu Lys Leu 
385                 390                 395                 400 


Val Glu Cys Thr Arg Met Glu Leu Leu Glu Asp Arg Phe Ile Gln Leu 
                405                 410                 415     


Phe Asp Glu Met Glu Asp Phe Leu His Gly Glu Ile Glu Ile Leu Arg 
            420                 425                 430         


Trp Met Ser Gly Val Ala Trp Tyr Thr Ile Leu Leu Asp Asn Ser Trp 
        435                 440                 445             


Asp Val Phe Gln Lys Ile Leu Gln Leu Val Thr Thr Ser Gln Pro Lys 
    450                 455                 460                 


Lys Arg Asn Ile Leu Phe Lys Gly Pro Ile Asn Ser Gly Lys Thr Thr 
465                 470                 475                 480 


Leu Ala Ser Ala Phe Met His Phe Phe Asp Gly Lys Ala Leu Asn Ile 
                485                 490                 495     


Asn Cys Pro Ala Glu Lys Leu Ser Phe Glu Leu Gly Cys Ala Ile Asp 
            500                 505                 510         


Gln Phe Cys Val Leu Leu Asp Asp Val Lys Gly Gln Ile Thr Leu Asn 
        515                 520                 525             


Lys His Leu Gln Pro Gly Gln Gly Val Asn Asn Leu Asp Asn Leu Arg 
    530                 535                 540                 


Asp His Leu Asp Gly Thr Ile Lys Val Asn Leu Glu Lys Lys His Val 
545                 550                 555                 560 


Asn Lys Arg Ser Gln Ile Phe Pro Pro Val Ile Met Thr Met Asn Glu 
                565                 570                 575     


Tyr Leu Leu Pro Pro Thr Val Gly Val Arg Phe Ala Leu His Ile His 
            580                 585                 590         


Phe His Cys Lys Thr Tyr Leu Lys Gln Ser Leu Glu Lys Ser Asp Leu 
        595                 600                 605             


Ile Glu Lys Arg Ile Leu Asn Ser Gly Tyr Thr Ile Leu Leu Leu Leu 
    610                 615                 620                 


Leu Trp Tyr Asn Pro Val Asp Ser Phe Thr Pro Lys Val Gln Glu Tyr 
625                 630                 635                 640 


Val Val Lys Trp Lys Glu Ile Leu Glu Arg His Val Ser Ile Thr Gln 
                645                 650                 655     


Phe Gly Asn Ile Gln Gln Asn Ile Leu Asp Gly Lys Asp Pro Leu His 
            660                 665                 670         


Gly Ile Val Ile Glu Glu Gln Ala 
        675                 680 


<210>  85
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  primer VP1-354F

<400>  85
accatatcag taggataggt a                                               21


<210>  86
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  primer VP1-354R

<400>  86
tgaattgtat ggctacagtg c                                               21


<210>  87
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  primer VP1-198F

<400>  87
cactgggata gttcctgagg                                                 20


<210>  88
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  primer VP1-198R

<400>  88
cctaatgcta ctaccctccc t                                               21


