                         SEQUENCE LISTING

<110>  Brandeis University
       Wangh, Lawrence J.
       Rice, John
 
<120>  Compositions, Methods, and Kits for Detecting and Identifying 
       Mycobacteria

<130>  SG-31685/US-1/PRO

<160>  84    

<170>  PatentIn version 3.5

<210>  1
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  1
ctccagccag gcacgctcac gtgacagacc g                                      31


<210>  2
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  2
ccggtggtcg ccgcgatcaa ggag                                              24


<210>  3
<211>  150
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  3
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatggac       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc cgggctggag                                       150


<210>  4
<211>  150
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  4
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatggtc       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc cgggctggag                                       150


<210>  5
<211>  150
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  5
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatggac       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgttggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc cgggctggag                                       150


<210>  6
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  6
ctggttggtg cagaag                                                       16


<210>  7
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  7
tcaggtccat gaattggctc aga                                               23


<210>  8
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  8
cagcgggttg tt                                                           12


<210>  9
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  9
atgcgcttgt ggatcaaccc cgat                                              24


<210>  10
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  10
aagccccagc gccgacagtc gtt                                               23


<210>  11
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  11
acagaccgcc gg                                                           12


<210>  12
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  12
accagggctg ggccatgcgc acca                                              24


<210>  13
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  13
ggaccgcagc cacgccaagt c                                                 21


<210>  14
<211>  113
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  14
ggaccgcagc cacgccaagt cggcccggtc ggttgccgag accatgggca actaccaccc       60

gcacggcgac gcgtcgatct acgacagcct ggtgcgcatg gcccagccct ggt             113


<210>  15
<211>  113
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  15
ggaccgcagc cacgccaagt cggcccggtc ggttgccgag accatgggca actaccaccc       60

gcacggcgac gtgtcgatct acgacagcct ggtgcgcatg gcccagccct ggt             113


<210>  16
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  16
cgaccgggcc                                                              10


<210>  17
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  17
aacccatggt ctcggcaact t                                                 21


<210>  18
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  18
aatcgccgtg cgggtggtag tt                                                22


<210>  19
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  19
gctgtcgtag atcgacgcg                                                    19


<210>  20
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  20
agcgcccact cgtagccgta caggatctcg aggaaac                                37


<210>  21
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  21
tcttgggctg gaagagctcg tatggcac                                          28


<210>  22
<211>  139
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  22
gcttgggctg gaagagctcg tatggcaccg gaaccggtaa ggacgcgatc accagcggca       60

tcgaggtcgt atggacgaac accccgacga aatgggacaa cagtttcctc gagatcctgt      120

acggctacga gtgggagct                                                   139


<210>  23
<211>  139
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  23
gcttgggctg gaagagctcg tatggcaccg gaaccggtaa ggacgcgatc accaccggca       60

tcgaggtcgt atggacgaac accccgacga aatgggacaa cagtttcctc gagatcctgt      120

acggctacga gtgggagct                                                   139


<210>  24
<211>  139
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  24
gcttgggctg gaagagctcg tatggcaccg gaaccggtaa ggacgcgatc accaacggca       60

tcgaggtcgt atggacgaac accccgacga aatgggacaa cagtttcctc gagatcctgt      120

acggctacga gtgggagct                                                   139


<210>  25
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  25
aagtgatcgc gtccttacct t                                                 21


<210>  26
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  26
gacctcgatg cagctg                                                       16


<210>  27
<211>  150
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  27
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatggac       60

cagaacaacc cgctgtcggg gttgaccgac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc cgggctggag                                       150


<210>  28
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  28
ctccagccag gcacgctcac gtgacagacc g                                      31


<210>  29
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  29
ccggtggtcg ccgcgatcaa ggag                                              24


<210>  30
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  30
ctggttggtg cagaag                                                       16


<210>  31
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  31
tcaggtccat gaattggctc aga                                               23


<210>  32
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  32
cagcgggttg tt                                                           12


<210>  33
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  33
atgcgcttgt ggatcaaccc cgat                                              24


<210>  34
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  34
aagccccagc gccgacagtc gtt                                               23


<210>  35
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  35
acagaccgcc gg                                                           12


<210>  36
<211>  150
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  36
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatgggc       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc ctggctggag                                       150


<210>  37
<211>  150
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  37
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagccc attcatggac       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc ctggctggag                                       150


<210>  38
<211>  150
<212>  DNA
<213>  Mycobacterium africanum

<400>  38
ccggtggtcg ccgcgatcaa ggagttcttc ggcaccagcc agctgagcca attcatggac       60

cagaacaacc cgctgtcggg gttgacccac aagcgccgac tgtcggcgct ggggcccggc      120

ggtctgtcac gtgagcgtgc cgggctggag                                       150


<210>  39
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  39
agcgcccact cgtagccgta caggatctcg aggaaac                                37


<210>  40
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  40
tcttgggctg gaagagctcg tatggcac                                          28


<210>  41
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  41
gtatcgcgtc cttaccggtt ccac                                              24


<210>  42
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  42
ctcgatgctg ctggtg                                                       16


<210>  43
<211>  139
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  43
gcttgggctg gaagagctcg tatggcaccg gaaccggtaa ggacgcgatc accaccggca       60

tcgaggtcgt atggacgaac accccgacga aatgggacaa cagtttcctc gagatcctgt      120

acggctacga gtgggagct                                                   139


<210>  44
<211>  139
<212>  DNA
<213>  Mycobacterium intracellulare

<400>  44
ggctgggctg gaagagctcg tacggcaccg gttcgggcaa ggatgcgatc accagcggcc       60

tcgaggtggt ctggacgccc accccgacga agtgggacaa cagcttcctg gagacgctgt      120

acggctacga atgggagct                                                   139


<210>  45
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  45
ttccggtaac caggactgaa cgggatacga atgggggttt gg                          42


<210>  46
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  46
tcgcagccac gttacgctcg tggacatac                                         29


<210>  47
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  47
ttacaaccta tcgtctcgcc gcaa                                              24


<210>  48
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  48
gcagtcaccc cg                                                           12


<210>  49
<211>  182
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  49
tcgcagccac gttacgctcg tggacatacc gatttcggcc cggccgcggc gagacgatag       60

gttgtcgggg tgactgccac agccactgaa ggggccaaac ccccattcgt atcccgttca      120

gtcctggtta ccggaggaaa ccgggggatc gggctggcga tcgcacagcg gctggctgcc      180

ga                                                                     182


<210>  50
<211>  182
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  50
tcgcagccac gttacgctcg tggacatacc gatttcggcc cggccgcggc gagatgatag       60

gttgtcgggg tgactgccac agccactgaa ggggccaaac ccccattcgt atcccgttca      120

gtcctggtta ccggaggaaa ccgggggatc gggctggcga tcgcacagcg gctggctgcc      180

ga                                                                     182


<210>  51
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  51
acaccctctc aggccggcta cccgtcg                                           27


<210>  52
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  52
gagtggcgaa cgggtgagta acacg                                             25


<210>  53
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  53
ttggctcatc ccacaccgct aaagtgcttt aa                                     32


<210>  54
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  54
ccaccacaag atatgcgtct cgtgttccta t                                      31


<210>  55
<211>  211
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  55
gagtggcgaa cgggtgagta acacgtgggt gatctgccct gcacttcggg ataagcctgg       60

gaaactgggt ctaataccgg ataggaccac gggatgcatg tcttgtggtg gaaagcgctt      120

tagcggtgtg ggatgagccc gcggcctatc agcttgttgg tggggtgacg gcctaccaag      180

gcgacgacgg gtagccggcc tgagagggtg t                                     211


<210>  56
<211>  209
<212>  DNA
<213>  Mycobacterium intracellulare

<400>  56
gagtggcgaa cgggtgagta acacgtgggc aatctgccct gcacttcggg ataagcctgg       60

gaaactgggt ctaataccgg ataggacctt tagacgcatg tcttttggtg gaaagctttt      120

gcggtgtggg atgggcccgc ggcctatcag cttgttggtg gggtgacggc ctaccaaggc      180

gacgacgggt agccggcctg agagggtgt                                        209


<210>  57
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  57
atacgggctt gcgccgagga cac                                               23


<210>  58
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  58
gtcagcgaac cgcagttcga gggccagacc aagacc                                 36


<210>  59
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  59
ccactggttt gaagccaacc cca                                               23


<210>  60
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  60
cgtgtaatga atagctgcg                                                    19


<210>  61
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  61
aggacgcgaa agtcgttgct                                                   20


<210>  62
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  62
tgaacaaggc t                                                            11


<210>  63
<211>  170
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  63
gtcagcgaac cgcagttcga gggccagacc aagaccaagt tgggcaacac cgaggtcaaa       60

tcgtttgtgc agaaggtctg taacgaacag ctgacccact ggtttgaagc caaccccacc      120

gacgcgaaag tcgttgtgaa caaggctgtg tcctcggcgc aagcccgtat                 170


<210>  64
<211>  170
<212>  DNA
<213>  Mycobacterium africanum

<400>  64
gtcagcgaac cgcagttcga gggccagacc aagaccaagt tgggcaacac cgaggtcaaa       60

tcgtttgtgc agaaggtctg taacgaacag ctgacccact ggtttgaagc caaccccacc      120

gactcgaaag tcgttgtgaa caaggctgtg tcctcggcgc aagcccgtat                 170


<210>  65
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  65
ggagcagact agcactgagg ta                                                22


<210>  66
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  66
tacctcagtg ctagtctgct cc                                                22


<210>  67
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  67
atcctccggg ctgccgaacc agcgga                                            26


<210>  68
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  68
tgctctggca tgtcatcggc gcgaattcgt                                        30


<210>  69
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  69
ttctcgggtc atgctcaaa                                                    19


<210>  70
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  70
gggtgtagcc                                                              10


<210>  71
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  71
gcttgaccgc cggcagcccg tcgatgc                                           27


<210>  72
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  72
agtcggcgga gaagggttga gtgc                                              24


<210>  73
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  73
gacaggtcgc cgccgatgag agcggtgagc                                        30


<210>  74
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  74
cgatatggtg tgatatatca cctttgcctg acagc                                  35


<210>  75
<211>  170
<212>  DNA
<213>  Mycobacterium microti

<400>  75
gtcagcgaac cgcagttcga gggccagacc aagaccaagt tgggcaacac cgaggtcaaa       60

tcgtttgtgc agaaggtctg taacgaacag ctgacccact ggtttgaagc caaccccacc      120

gactcgaaag tcgttgtgaa caaggctgtg tcctcggcgc aagcccgtat                 170


<210>  76
<211>  170
<212>  DNA
<213>  Mycobacterium bovis

<400>  76
gtcagcgaac cgcagttcga gggccagacc aagaccaagt tgggcaacac cgaggtcaaa       60

tcgtttgtgc agaaggtctg taatgaacag ctgacccact ggtttgaagc caaccccacc      120

gactcgaaag tcgttgtgaa caaggctgtg tcctcggcgc aagcccgtat                 170


<210>  77
<211>  122
<212>  DNA
<213>  Mycobacterium chelonae

<400>  77
gtcggcgaac ctcagttcga gggtcaaacc aagaccaagc tgggcaacac cgaggtcaag       60

tcgtttgtgc agaaggtgtg caacgagcag ctgcagcact ggttcgactc gaaccccgcc      120

ga                                                                     122


<210>  78
<211>  122
<212>  DNA
<213>  Mycobacterium intracellulare

<400>  78
gtcagcgaac cgcagttcga gggtcagacc aagaccaagc tgggcaacac cgaagtgaag       60

tcgttcgtgc agaaggtctg caacgaacag ctcacccact ggttcgaggc caaccccgcg      120

ga                                                                     122


<210>  79
<211>  122
<212>  DNA
<213>  Mycobacterium asiaticum

<400>  79
gtcgccgaac cccagttcga gggccagaca aagaccaagc tgggcaacac cgaggtcaag       60

tcgttcgtgc agaaggtgtg caacgaacag ctcacccact ggttcgaggc caatccgtcg      120

ga                                                                     122


<210>  80
<211>  121
<212>  DNA
<213>  Mycobacterium avium

<400>  80
gtgagcgaac cgcagttcga gggccagacc aagaccaaac tgggcaacac cgaggtgaag       60

tcgttcgtgc agaaggtgtg caacgaacag ctcacccact ggttcgaagc caaccccgca      120

g                                                                      121


<210>  81
<211>  209
<212>  DNA
<213>  Mycobacterium chelonae

<400>  81
gagtggcgaa cgggtgagta acacgtgggt gatctgccct gcactctggg ataagcctgg       60

gaaactgggt ctaataccgg ataggaccac acacttcatg gtgagtggtg caaagctttt      120

gcggtgtggg atgagcccgc ggcctatcag cttgttggtg gggtaatggc ccaccaaggc      180

gacgacgggt agccggcctg agagggtga                                        209


<210>  82
<211>  209
<212>  DNA
<213>  Mycobacterium asiaticum

<400>  82
gagtggcgaa cgggtgagta acacgtgggt gatctgccct gcacttcggg ataagcctgg       60

gaaactgggt ctaataccgg ataggaccac gggatgcatg tcctgtggtg gaaagctttt      120

gcggtgtggg atgggcccgc ggcctatcag cttgttggtg gggtgacggc ctaccaaggc      180

gacgacgggt agccggcctg agagggtgt                                        209


<210>  83
<211>  209
<212>  DNA
<213>  Mycobacterium avium

<400>  83
gagtggcgaa cgggtgagta acacgtgggc aatctgccct gcacttcggg ataagcctgg       60

gaaactgggt ctaataccgg ataggacctc aagacgcatg tcttctggtg gaaagctttt      120

gcggtgtggg atgggcccgc ggcctatcag cttgttggtg gggtgacggc ctaccaaggc      180

gacgacgggt agccggcctg agagggtgt                                        209


<210>  84
<211>  209
<212>  DNA
<213>  Mycobacterium fortuitum

<400>  84
gagtggcgaa cgggtgagta acacgtgggt gatctgccct gcactctggg ataagcctgg       60

gaaactgggt ctaataccga ataggaccgc gctcttcatg tggggtggtg gaaagctttt      120

gcggtgtggg atgggcccgc ggcctatcag cttgttggtg gggtaatggc ctaccaaggc      180

gacgacgggt agccggcctg agagggtgt                                        209


