                         SEQUENCE LISTING

<110>  Translational Genomics Research Institute
       Bittner, Michael
       Trent, Jeffrey
 
<120>  IDENTIFICATION AND TREATMENT OF CANCER SUBSETS

<130>  063608-432218

<150>  US 61/393,065
<151>  2010-10-14

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  2938
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  INPP5A mRNA/cDNA NCBI Reference Sequence NM_005539.3

<400>  1
gcgcgggccg ctgtgaggcg cggcggcgag cgacgggcgc ggggccgcgg agcagcgagc       60

gagcgagcga gcgcgaggcc ggagccccgg ccaggcccgg ccgacccgcc gagcccgcga      120

tgcgccccgg ggccgccccc cggcgcagct gacgccccgc ggccccgcga agaccccggc      180

cggccggtcc cggaggaagc ggccgccgcc gccgccgccc agcccagcgc ccgcgccgcc      240

cgggcaccat ggcggggaag gcggccgccc cgggcaccgc ggtgctgctg gtcacggcca      300

acgtgggctc gctcttcgac gacccagaaa acctgcagaa gaactggctt cgggaatttt      360

accaggtcgt gcacacacac aagccgcact tcatggcctt gcactgtcag gagtttggag      420

ggaagaacta cgaggcctcc atgtcccacg tggacaagtt cgtcaaagaa ctattgtcga      480

gtgatgcgat gaaagaatat aacagggctc gagtctacct ggatgaaaac tacaaatccc      540

aggagcactt cacggcacta ggaagctttt attttcttca tgagtcctta aaaaacatct      600

accagtttga ctttaaagct aagaagtata gaaaggtcgc tggcaaagag atctactcgg      660

ataccttaga gagcacgccc atgctggaga aggagaagtt tccgcaggac tacttccccg      720

agtgcaaatg gtcaagaaaa ggcttcatcc ggacgaggtg gtgcattgca gactgtgcct      780

ttgacttggt gaatatccat cttttccatg atgcttccaa tctggtcgcc tgggaaacaa      840

gcccttccgt gtactcggga atccggcaca aggcactggg ctacgtgctg gacagaatca      900

ttgatcagcg attcgagaag gtttcctact ttgtatttgg tgatttcaac ttccggctgg      960

attccaagtc cgtcgtggag acgctctgca caaaagccac catgcagacg gtccgggccg     1020

ccgacaccaa tgaagtggtg aagctcatat ttcgtgagtc ggacaacgac cggaaggtta     1080

tgctccagtt agaaaagaaa ctcttcgact acttcaacca ggaggttttc cgagacaaca     1140

acggcaccgc gctcttggag tttgacaagg agttgtctgt ctttaaggac agactgtatg     1200

aactggacat ctcgttccct cccagctacc cgtacagtga ggacgcccgc cagggtgagc     1260

agtacatgaa cacccggtgc ccagcctggt gtgaccgcat cctcatgtcc ccgtctgcca     1320

aggagctggt gctgcggtcg gagagcgagg agaaggttgt cacctatgac cacattgggc     1380

ccaacgtctg catgggagac cacaagcccg tgttcctggc cttccgaatc atgcccgggg     1440

caggtaaacc tcatgcccat gtgcacaagt gttgtgtcgt gcagtgacgt ggtgggaaga     1500

gatgccagcg ccacgagagg acacttcgtg agcctccctg tagccgtgga ccgaatacgc     1560

actcttgaaa gctgcatcga gaacccgccc aagcgccacc tgctagacgg ccagccccac     1620

acttcgcttc agcctccgga ccattccgga gcagcctcac atacctcact gtctcgtctg     1680

tctatgtgac attaagtaga aatattggtt tttttttttt ttttttaaat aagtcacagt     1740

cctgttgtca aaactctaat agacagcaaa gagggtctgt accgtagact tcacagtttt     1800

cagtttttaa tgattgccag tggaggggct tcttcagcac agagaccccc cactgtgtcc     1860

agggaccccc tctgccaggt ggaggtgtgt ccaggggctg gggaagccga gacgggcact     1920

ccctctgccg gccggcagcg tggccctgag catggcaagg gggtctgtct ctgccgatgc     1980

tccttccgcg gcactgactc tgcgccgtgt cacatggttt ttgaatcaca ctgcagctgc     2040

tttccatttt tatatatata taaatatata taaatatata ctttttaaaa ataatttata     2100

aatcttacca aaacttatgc taaatatact ttccagtatg aacgcacagg agagtcccat     2160

cagcaggcgg cattggagtc taggagctca gctgtgtgtc catcaacaca caaattcgta     2220

aaaaacacac atggcctcgc catcgtgggt aaaatcggcc ccacagcacg tctgcaccag     2280

cgggccgtta ctcccatgcc gttcttctgt gtaatattaa gaactgaatg tgaagtttat     2340

agctagcctg ggtgtacctt ttaagaattt tgtaaaccgt ttgtctgtct tttgttactg     2400

ttttatggtg ccaagtatcc tacgttacaa caataatatc atgggagaaa tagaaatagc     2460

ctagtttgct tccaatagaa actgctttta acatgggctg tatataaaaa tattaaagag     2520

aaacaaaact gtacatttcc tcattgctcc gctacagaca acccatgtca taaccttgtt     2580

gcaaatattt ttctcctata gcagtaagta cagcattaga aggtgattag agagtctgtt     2640

gatgaaacac aaatgtatgt tttattgatt ttactttaga acactacaga gttcctggac     2700

cgggtgaagg cattagctgg gtgtttgtgt gggataaata ctaccactgc aagtgactgc     2760

tgtccgctgc ggaatctgtt cttggtggaa gcacaggtcc gtgtcgctgc tgtggttgcc     2820

gctgtccgcg gttcaacacg gagtccgccc cgcgggtttc agctgttggt cgttctgagg     2880

ggcctttgga agtgaccggt ctggttccta agcaataaaa ttgaccgtgg tgaaaata       2938


<210>  2
<211>  412
<212>  PRT
<213>  Homo sapiens


<220>
<221>  MISC_FEATURE
<223>  INPP5A Protein GenBank CAI40942.1

<400>  2

Met Ala Gly Lys Ala Ala Ala Pro Gly Thr Ala Val Leu Leu Val Thr 
1               5                   10                  15      


Ala Asn Val Gly Ser Leu Phe Asp Asp Pro Glu Asn Leu Gln Lys Asn 
            20                  25                  30          


Trp Leu Arg Glu Phe Tyr Gln Val Val His Thr His Lys Pro His Phe 
        35                  40                  45              


Met Ala Leu His Cys Gln Glu Phe Gly Gly Lys Asn Tyr Glu Ala Ser 
    50                  55                  60                  


Met Ser His Val Asp Lys Phe Val Lys Glu Leu Leu Ser Ser Asp Ala 
65                  70                  75                  80  


Met Lys Glu Tyr Asn Arg Ala Arg Val Tyr Leu Asp Glu Asn Tyr Lys 
                85                  90                  95      


Ser Gln Glu His Phe Thr Ala Leu Gly Ser Phe Tyr Phe Leu His Glu 
            100                 105                 110         


Ser Leu Lys Asn Ile Tyr Gln Phe Asp Phe Lys Ala Lys Lys Tyr Arg 
        115                 120                 125             


Lys Val Ala Gly Lys Glu Ile Tyr Ser Asp Thr Leu Glu Ser Thr Pro 
    130                 135                 140                 


Met Leu Glu Lys Glu Lys Phe Pro Gln Asp Tyr Phe Pro Glu Cys Lys 
145                 150                 155                 160 


Trp Ser Arg Lys Gly Phe Ile Arg Thr Arg Trp Cys Ile Ala Asp Cys 
                165                 170                 175     


Ala Phe Asp Leu Val Asn Ile His Leu Phe His Asp Ala Ser Asn Leu 
            180                 185                 190         


Val Ala Trp Glu Thr Ser Pro Ser Val Tyr Ser Gly Ile Arg His Lys 
        195                 200                 205             


Ala Leu Gly Tyr Val Leu Asp Arg Ile Ile Asp Gln Arg Phe Glu Lys 
    210                 215                 220                 


Val Ser Tyr Phe Val Phe Gly Asp Phe Asn Phe Arg Leu Asp Ser Lys 
225                 230                 235                 240 


Ser Val Val Glu Thr Leu Cys Thr Lys Ala Thr Met Gln Thr Val Arg 
                245                 250                 255     


Ala Ala Asp Thr Asn Glu Val Val Lys Leu Ile Phe Arg Glu Ser Asp 
            260                 265                 270         


Asn Asp Arg Lys Val Met Leu Gln Leu Glu Lys Lys Leu Phe Asp Tyr 
        275                 280                 285             


Phe Asn Gln Glu Val Phe Arg Asp Asn Asn Gly Thr Ala Leu Leu Glu 
    290                 295                 300                 


Phe Asp Lys Glu Leu Ser Val Phe Lys Asp Arg Leu Tyr Glu Leu Asp 
305                 310                 315                 320 


Ile Ser Phe Pro Pro Ser Tyr Pro Tyr Ser Glu Asp Ala Arg Gln Gly 
                325                 330                 335     


Glu Gln Tyr Met Asn Thr Arg Cys Pro Ala Trp Cys Asp Arg Ile Leu 
            340                 345                 350         


Met Ser Pro Ser Ala Lys Glu Leu Val Leu Arg Ser Glu Ser Glu Glu 
        355                 360                 365             


Lys Val Val Thr Tyr Asp His Ile Gly Pro Asn Val Cys Met Gly Asp 
    370                 375                 380                 


His Lys Pro Val Phe Leu Ala Phe Arg Ile Met Pro Gly Ala Gly Lys 
385                 390                 395                 400 


Pro His Ala His Val His Lys Cys Cys Val Val Gln 
                405                 410         


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  The primer used for INPP5A q-Real-Time PCR

<400>  3
ttgcagactg tgcctttgac                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  The primer used for INPP5A q-Real-Time PCR

<400>  4
aaaccttctc gaatcgctga                                                   20


<210>  5
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  The primers used for ACTB q-Real-Time PCR

<400>  5
tcatgaagtg tgacgtggac atc                                               23


<210>  6
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  The primers used for ACTB q-Real-Time PCR

<400>  6
caggaggagc aatgatcttg atct                                              24


