                         SEQUENCE LISTING

<110>  Gu, Li-Qun
       Wang, Yong
       Kai, Tian
 
<120>  NANOPORE-FACILITATED SINGLE MOLECULE DETECTION OF NUCLEIC ACIDS

<130>  52553_96854

<150>  US 61/399578
<151>  2010-07-14

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  22
<212>  RNA
<213>  Homo sapiens

<400>  1
uuaaugcuaa ucgugauagg gg                                                22


<210>  2
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  2
cccctatcac gattagcatt aa                                                22


<210>  3
<211>  52
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  3
cccccccccc cccccccccc cccccccccc cccctatcac gattagcatt aa               52


<210>  4
<211>  52
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  4
cccctatcac gattagcatt aacccccccc cccccccccc cccccccccc cc               52


<210>  5
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  5
cccccccccc cccccccccc cccccccccc cccctatcac gattagcatt aacccccccc       60

cccccccccc cccccccccc cc                                                82


<210>  6
<211>  22
<212>  RNA
<213>  Homo sapiens

<400>  6
ugagguagua gguuguauag uu                                                22


<210>  7
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  7
cccccccccc cccccccccc cccccccccc aactatacaa cctactacct cacccccccc       60

cccccccccc cccccccccc cc                                                82


<210>  8
<211>  22
<212>  RNA
<213>  Homo sapiens

<400>  8
ugagguagua gguugugugg uu                                                22


<210>  9
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  9
cccccccccc cccccccccc cccccccccc aaccacacaa cctactacct cacccccccc       60

cccccccccc cccccccccc cc                                                82


<210>  10
<211>  49
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is a, c, g, or t

<400>  10
gcgagcacag aattaatacg actcactata ggtttttttt tttttttvn                   49


<210>  11
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  11
ttaatgctaa tcgtgatagg ggt                                               23


<210>  12
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  12
gcgagcacag aattaatacg ac                                                22


<210>  13
<211>  22
<212>  RNA
<213>  Homo sapiens

<400>  13
ugagguagua gguuguaugg uu                                                22


<210>  14
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  14
cccccccccc cccccccccc cccccccccc aaccatacaa cctactacct cacccccccc       60

cccccccccc cccccccccc cc                                                82


<210>  15
<211>  22
<212>  RNA
<213>  Homo sapiens

<400>  15
ucaccgggug uaaaucagcu ug                                                22


<210>  16
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  synthetic

<400>  16
cccccccccc cccccccccc cccccccccc caagctgatt tacacccggt gacccccccc       60

cccccccccc cccccccccc cc                                                82


<210>  17
<211>  21
<212>  PRT
<213>  Artificial

<220>
<223>  synthetic


<220>
<221>  MISC_FEATURE
<222>  (12)..(12)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (13)..(13)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (14)..(14)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (15)..(15)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (16)..(16)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (17)..(17)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (18)..(18)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (19)..(19)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (20)..(20)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (21)..(21)
<223>  peptide nucleic acid adenine residue

<400>  17

Tyr Gly Arg Lys Lys Arg Arg Gln Arg Arg Arg Xaa Xaa Xaa Xaa Xaa 
1               5                   10                  15      


Xaa Xaa Xaa Xaa Xaa 
            20      


<210>  18
<211>  10
<212>  PRT
<213>  Artificial

<220>
<223>  synthetic


<220>
<221>  MISC_FEATURE
<222>  (1)..(1)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (2)..(2)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (3)..(3)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (4)..(4)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (5)..(5)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (6)..(6)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (7)..(7)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (8)..(8)
<223>  peptide nucleic acid cytosine residue

<220>
<221>  MISC_FEATURE
<222>  (9)..(9)
<223>  peptide nucleic acid adenine residue

<220>
<221>  MISC_FEATURE
<222>  (10)..(10)
<223>  peptide nucleic acid adenine residue

<400>  18

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 
1               5                   10  


<210>  19
<211>  11
<212>  PRT
<213>  Human immunodeficiency virus

<400>  19

Tyr Gly Arg Lys Lys Arg Arg Gln Arg Arg Arg 
1               5                   10      


<210>  20
<211>  882
<212>  DNA
<213>  Staphylococcus aureus

<400>  20
gcagattctg atattaatat taaaaccggt actacagata ttggaagcaa tactacagta       60

aaaacaggtg atttagtcac ttatgataaa gaaaatggca tgcacaaaaa agtattttat      120

agttttatcg atgataaaaa tcacaataaa aaactgctag ttattagaac gaaaggtacc      180

attgctggtc aatatagagt ttatagcgaa gaaggtgcta acaaaagtgg tttagcctgg      240

ccttcagcct ttaaggtaca gttgcaacta cctgataatg aagtagctca aatatctgat      300

tactatccaa gaaattcgat tgatacaaaa gagtatatga gtactttaac ttatggattc      360

aacggtaatg ttactggtga tgatacagga aaaattggcg gccttattgg tgcaaatgtt      420

tcgattggtc atacactgaa atatgttcaa cctgatttca aaacaatttt agagagccca      480

actgataaaa aagtaggctg gaaagtgata tttaacaata tggtgaatca aaattgggga      540

ccatatgata gagattcttg gaacccggta tatggcaatc aacttttcat gaaaactaga      600

aatggttcta tgaaagcagc agataacttc cttgatccta acaaagcaag ttctctatta      660

tcttcagggt tttcaccaga cttcgctaca gttattacta tggatagaaa agcatccaaa      720

caacaaacaa atatagatgt aatatacgaa cgagttcgtg atgattacca attgcattgg      780

acttcaacaa attggaaagg taccaatact aaagataaat ggacagatcg ttcttcagaa      840

agatataaaa tcgattggga aaaagaagaa atgacaaatt aa                         882


<210>  21
<211>  293
<212>  PRT
<213>  Staphylococcus aureus

<400>  21

Ala Asp Ser Asp Ile Asn Ile Lys Thr Gly Thr Thr Asp Ile Gly Ser 
1               5                   10                  15      


Asn Thr Thr Val Lys Thr Gly Asp Leu Val Thr Tyr Asp Lys Glu Asn 
            20                  25                  30          


Gly Met His Lys Lys Val Phe Tyr Ser Phe Ile Asp Asp Lys Asn His 
        35                  40                  45              


Asn Lys Lys Leu Leu Val Ile Arg Thr Lys Gly Thr Ile Ala Gly Gln 
    50                  55                  60                  


Tyr Arg Val Tyr Ser Glu Glu Gly Ala Asn Lys Ser Gly Leu Ala Trp 
65                  70                  75                  80  


Pro Ser Ala Phe Lys Val Gln Leu Gln Leu Pro Asp Asn Glu Val Ala 
                85                  90                  95      


Gln Ile Ser Asp Tyr Tyr Pro Arg Asn Ser Ile Asp Thr Lys Glu Tyr 
            100                 105                 110         


Met Ser Thr Leu Thr Tyr Gly Phe Asn Gly Asn Val Thr Gly Asp Asp 
        115                 120                 125             


Thr Gly Lys Ile Gly Gly Leu Ile Gly Ala Asn Val Ser Ile Gly His 
    130                 135                 140                 


Thr Leu Lys Tyr Val Gln Pro Asp Phe Lys Thr Ile Leu Glu Ser Pro 
145                 150                 155                 160 


Thr Asp Lys Lys Val Gly Trp Lys Val Ile Phe Asn Asn Met Val Asn 
                165                 170                 175     


Gln Asn Trp Gly Pro Tyr Asp Arg Asp Ser Trp Asn Pro Val Tyr Gly 
            180                 185                 190         


Asn Gln Leu Phe Met Lys Thr Arg Asn Gly Ser Met Lys Ala Ala Asp 
        195                 200                 205             


Asn Phe Leu Asp Pro Asn Lys Ala Ser Ser Leu Leu Ser Ser Gly Phe 
    210                 215                 220                 


Ser Pro Asp Phe Ala Thr Val Ile Thr Met Asp Arg Lys Ala Ser Lys 
225                 230                 235                 240 


Gln Gln Thr Asn Ile Asp Val Ile Tyr Glu Arg Val Arg Asp Asp Tyr 
                245                 250                 255     


Gln Leu His Trp Thr Ser Thr Asn Trp Lys Gly Thr Asn Thr Lys Asp 
            260                 265                 270         


Lys Trp Thr Asp Arg Ser Ser Glu Arg Tyr Lys Ile Asp Trp Glu Lys 
        275                 280                 285             


Glu Glu Met Thr Asn 
    290             


<210>  22
<211>  293
<212>  PRT
<213>  Staphylococcus aureus

<400>  22

Ala Asp Ser Asp Ile Asn Ile Lys Thr Gly Thr Thr Asp Ile Gly Ser 
1               5                   10                  15      


Asn Thr Thr Val Lys Thr Gly Asp Leu Val Thr Tyr Asp Lys Glu Asn 
            20                  25                  30          


Gly Met His Lys Lys Val Phe Tyr Ser Phe Ile Asp Asp Lys Asn His 
        35                  40                  45              


Asn Lys Lys Leu Leu Val Ile Arg Thr Lys Gly Thr Ile Ala Gly Gln 
    50                  55                  60                  


Tyr Arg Val Tyr Ser Glu Glu Gly Ala Asn Lys Ser Gly Leu Ala Trp 
65                  70                  75                  80  


Pro Ser Ala Phe Lys Val Gln Leu Gln Leu Pro Asp Asn Glu Val Ala 
                85                  90                  95      


Gln Ile Ser Asp Tyr Tyr Pro Arg Asn Ser Ile Asp Thr Lys Glu Tyr 
            100                 105                 110         


Met Ser Thr Leu Thr Tyr Gly Phe Asn Gly Asn Val Thr Gly Asp Asp 
        115                 120                 125             


Thr Gly Asp Ile Gly Gly Leu Ile Gly Ala Asn Val Ser Ile Gly His 
    130                 135                 140                 


Thr Leu Lys Tyr Val Gln Pro Asp Phe Lys Thr Ile Leu Glu Ser Pro 
145                 150                 155                 160 


Thr Asp Lys Lys Val Gly Trp Lys Val Ile Phe Asn Asn Met Val Asn 
                165                 170                 175     


Gln Asn Trp Gly Pro Tyr Asp Arg Asp Ser Trp Asn Pro Val Tyr Gly 
            180                 185                 190         


Asn Gln Leu Phe Met Lys Thr Arg Asn Gly Ser Met Lys Ala Ala Asp 
        195                 200                 205             


Asn Phe Leu Asp Pro Asn Lys Ala Ser Ser Leu Leu Ser Ser Gly Phe 
    210                 215                 220                 


Ser Pro Asp Phe Ala Thr Val Ile Thr Met Asp Arg Lys Ala Ser Lys 
225                 230                 235                 240 


Gln Gln Thr Asn Ile Asp Val Ile Tyr Glu Arg Val Arg Asp Asp Tyr 
                245                 250                 255     


Gln Leu His Trp Thr Ser Thr Asn Trp Lys Gly Thr Asn Thr Lys Asp 
            260                 265                 270         


Lys Trp Thr Asp Arg Ser Ser Glu Arg Tyr Lys Ile Asp Trp Glu Lys 
        275                 280                 285             


Glu Glu Met Thr Asn 
    290             


