                                SEQUENCE LISTING

<110> Bart, Rebecca
      Chern, Mawsheng
      Ronald, Pamela
      Vega-Sanchez, Miguel E.
      The Regents of the University of California

<120> Inhibition of Snl6 Expression for
  Biofuel Production

<130> 77429-807994

<140> WO PCT/US11/40941   
<141> 2011-06-17  

<150> US 61/356,503       
<151> 2010-06-18  

<160> 38

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 1092
<212> DNA
<213> Oryza sativa

<220> 
<223> suppressor of NH1-mediated lesion formation 6
      (Snl6) cDNA, cinnamoyl-CoA reductase-like family

<400> 1
atgcgggcgg cgctgctgca tggccacggg ggcggggcgg cggcggcggc ggcggccggg 60
tggcgcccct cggccggcga cgcggacgtc aagcgcaccg cgggcggcga cgggggcgcg 120
gcggggccgc gcaccgtctg cgtcacgggc ggcatctcct tcgtcgggtt cgccgtcgtc 180
gaccgcctgc tccggcacgg ctacaccgtg cgcctcgccc tcgagaccca agaggacctg 240
gacaagctga gggagatgga gatgttcggc gaggacggcc gggacggcgt gtggacggtg 300
atggcgaacg tgacggaccc cgagagcctg caccgggcgt tcgacggatg cgccggcgtg 360
tttcacacct cggcgttcgt ggatccgggg ggcatgtccg gctacacgaa acatatggca 420
agcttggagg cgaaagcagc agagcaggtg atcgaggcgt gcgtgaggac agagtccgtc 480
agaaaatgcg tcttcacgtc gtcgttgcta gcatgtgtat ggaggcaaaa ttaccctcat 540
gaccgacggt ttcctaccat catcgacgag aactgctgga gcgatgagag cttctgccgt 600
gacaacaagc tgtggtttgc actgggcaag acggcagcgg agaagacggc gtggagggca 660
gccaggggta gggacctgaa gctggtcacc gtctgcccgg cgctggtcac cggtccggga 720
ttccgccgcc gcaactccac cgcctccatc gcctacctca aaggggctcg cgccatgctc 780
gccgacggcc tgctcgcgac ggcgagcgtg gagacggtgg cggaggcgca cgtccgggtg 840
tacgaggcga tgggcgacaa cacggccggc gggaggtaca tctgctacga ccacgtggtg 900
aagaggcccg aggagttcgc ggagctggag cgccagctgg ggatcccgcg cagagcggcg 960
gcggcggcgg ccgcgcagga ctccggcgac cggccggcga ggttcgatct gtgcaggcag 1020
aagctggcga ggctcatgtc cacccgaagg cggtgcacgt acgacgacta ctactccgtc 1080
gcattcgact ag                                                     1092

<210> 2
<211> 363
<212> PRT
<213> Oryza sativa

<220> 
<223> suppressor of NH1-mediated lesion formation 6
      (Snl6), cinnamoyl-CoA reductase-like family

<400> 2
Met Arg Ala Ala Leu Leu His Gly His Gly Gly Gly Ala Ala Ala Ala
 1               5                  10                  15      
Ala Ala Ala Gly Trp Arg Pro Ser Ala Gly Asp Ala Asp Val Lys Arg
            20                  25                  30          
Thr Ala Gly Gly Asp Gly Gly Ala Ala Gly Pro Arg Thr Val Cys Val
        35                  40                  45              
Thr Gly Gly Ile Ser Phe Val Gly Phe Ala Val Val Asp Arg Leu Leu
    50                  55                  60                  
Arg His Gly Tyr Thr Val Arg Leu Ala Leu Glu Thr Gln Glu Asp Leu
65                  70                  75                  80  
Asp Lys Leu Arg Glu Met Glu Met Phe Gly Glu Asp Gly Arg Asp Gly
                85                  90                  95      
Val Trp Thr Val Met Ala Asn Val Thr Asp Pro Glu Ser Leu His Arg
            100                 105                 110         
Ala Phe Asp Gly Cys Ala Gly Val Phe His Thr Ser Ala Phe Val Asp
        115                 120                 125             
Pro Gly Gly Met Ser Gly Tyr Thr Lys His Met Ala Ser Leu Glu Ala
    130                 135                 140                 
Lys Ala Ala Glu Gln Val Ile Glu Ala Cys Val Arg Thr Glu Ser Val
145                 150                 155                 160 
Arg Lys Cys Val Phe Thr Ser Ser Leu Leu Ala Cys Val Trp Arg Gln
                165                 170                 175     
Asn Tyr Pro His Asp Arg Arg Phe Pro Thr Ile Ile Asp Glu Asn Cys
            180                 185                 190         
Trp Ser Asp Glu Ser Phe Cys Arg Asp Asn Lys Leu Trp Phe Ala Leu
        195                 200                 205             
Gly Lys Thr Ala Ala Glu Lys Thr Ala Trp Arg Ala Ala Arg Gly Arg
    210                 215                 220                 
Asp Leu Lys Leu Val Thr Val Cys Pro Ala Leu Val Thr Gly Pro Gly
225                 230                 235                 240 
Phe Arg Arg Arg Asn Ser Thr Ala Ser Ile Ala Tyr Leu Lys Gly Ala
                245                 250                 255     
Arg Ala Met Leu Ala Asp Gly Leu Leu Ala Thr Ala Ser Val Glu Thr
            260                 265                 270         
Val Ala Glu Ala His Val Arg Val Tyr Glu Ala Met Gly Asp Asn Thr
        275                 280                 285             
Ala Gly Gly Arg Tyr Ile Cys Tyr Asp His Val Val Lys Arg Pro Glu
    290                 295                 300                 
Glu Phe Ala Glu Leu Glu Arg Gln Leu Gly Ile Pro Arg Arg Ala Ala
305                 310                 315                 320 
Ala Ala Ala Ala Ala Gln Asp Ser Gly Asp Arg Pro Ala Arg Phe Asp
                325                 330                 335     
Leu Cys Arg Gln Lys Leu Ala Arg Leu Met Ser Thr Arg Arg Arg Cys
            340                 345                 350         
Thr Tyr Asp Asp Tyr Tyr Ser Val Ala Phe Asp
        355                 360             


<210> 3
<211> 381
<212> PRT
<213> Sorghum bicolor

<220> 
<223> sorghum Snl6 homolog, GenBank Accession No.
      EES03334.1

<400> 3
Met Gly Val Leu Arg Ser Thr Gln Ser Leu Gln Ala Glu Val Asp Glu
 1               5                  10                  15      
Leu Arg Ala Ala Leu Gly Leu Ser Gly Gly Gly Gly His Gly Glu Ala
            20                  25                  30          
Ala Ala Gly Gly Gly Trp Arg Arg Ser Ala Gly Arg Gly His Ala Asp
        35                  40                  45              
Ala Lys Arg Ala Pro Gly Gly Asp Ala Gly Ala Gly Ala Ala Ala Arg
    50                  55                  60                  
Ala Val Cys Val Thr Gly Gly Ile Ser Phe Val Gly Phe Ala Val Val
65                  70                  75                  80  
Asp Arg Leu Leu Arg His Gly Tyr Thr Val Arg Leu Ala Leu Glu Thr
                85                  90                  95      
Gln Glu Asp Met Asp Lys Leu Arg Glu Met Glu Met Phe Gly Glu Asp
            100                 105                 110         
Gly Arg Asp Gly Val Trp Thr Val Met Ala Asn Val Met Asp Pro Glu
        115                 120                 125             
Ser Leu His Arg Ala Phe Asp Gly Cys Ala Gly Val Phe His Thr Ser
    130                 135                 140                 
Ala Phe Val Asp Pro Gly Gly Met Ser Gly Tyr Thr Lys His Met Ala
145                 150                 155                 160 
Thr Leu Glu Ala Gln Ala Ala Glu Arg Val Ile Glu Ala Cys Val Arg
                165                 170                 175     
Thr Glu Ser Val Arg Lys Cys Val Phe Thr Ser Ser Leu Leu Ala Cys
            180                 185                 190         
Val Trp Arg Gln Asn Tyr Pro His Asp Arg Arg Cys Pro Thr Ile Ile
        195                 200                 205             
Asp Glu Ser Cys Trp Ser Asp Glu Ser Phe Cys Arg Asp Asn Lys Leu
    210                 215                 220                 
Trp Phe Ala Leu Gly Lys Thr Ala Ala Glu Lys Ala Ala Trp Arg Ala
225                 230                 235                 240 
Ala Arg Gly Arg Asp Leu Lys Leu Val Thr Ile Cys Pro Ala Leu Val
                245                 250                 255     
Thr Gly Pro Gly Phe Arg Arg Arg Asn Ser Thr Ala Ser Ile Ala Tyr
            260                 265                 270         
Leu Lys Gly Ala Arg Ala Met Leu Ala Asp Gly Leu Leu Ala Thr Ala
        275                 280                 285             
Asn Val Glu Thr Val Ala Glu Ala His Val His Ala Tyr Glu Ala Met
    290                 295                 300                 
Gly Asp Asn Thr Ala Gly Gly Arg Tyr Ile Cys Tyr Asp His Val Val
305                 310                 315                 320 
Lys Arg Pro Glu Glu Phe Ala Glu Leu Glu Arg Gln Leu Gly Leu Pro
                325                 330                 335     
Gly Gly Ala Thr Ala Ala Arg Gly Ser Asp Asp Asp Arg Pro Ala Arg
            340                 345                 350         
Phe Glu Leu Cys Lys Arg Lys Leu Ser Arg Leu Met Ser Ser Arg Arg
        355                 360                 365             
Arg Cys Thr Tyr Asp Thr Tyr Tyr Ser Val Ala Phe Asp
    370                 375                 380     


<210> 4
<211> 370
<212> PRT
<213> Zea mays

<220> 
<223> maize Snl6 homolog, GenBank Accession No.
      ACR34585.1

<400> 4
Met Gly Val Leu Arg Ser Thr Gln Ser Leu Glu Ala Glu Val Asp Glu
 1               5                  10                  15      
Leu Arg Ala Ala Leu Leu Ala Gly Gly Trp Arg Arg Ser Ala Gly His
            20                  25                  30          
Ala Asp Ala Lys Arg Ala Pro Arg Gly Asp Ala Gly Gly Ala Ala Ala
        35                  40                  45              
Arg Ala Val Cys Val Thr Gly Gly Ile Ser Phe Val Gly Phe Ala Val
    50                  55                  60                  
Val Asp Arg Leu Leu Arg His Gly Tyr Thr Val Arg Leu Ala Leu Glu
65                  70                  75                  80  
Thr Gln Glu Asp Met Asp Lys Leu Arg Glu Met Glu Met Phe Gly Glu
                85                  90                  95      
Asp Gly Arg Asp Gly Gly Val Ser Thr Val Met Ala Asn Val Met Asp
            100                 105                 110         
Pro Asp Gly Leu Arg Arg Ala Phe Asp Gly Cys Ala Gly Val Phe His
        115                 120                 125             
Thr Ser Ala Phe Val Asp Pro Gly Gly Met Ser Gly Tyr Thr Lys His
    130                 135                 140                 
Met Ala Ala Leu Glu Ala Gln Ala Ala Glu Arg Val Ile Glu Ala Cys
145                 150                 155                 160 
Val Arg Thr Glu Ser Val Arg Lys Cys Val Phe Thr Ser Ser Leu Leu
                165                 170                 175     
Ala Cys Val Trp Arg Gln Asp Tyr Pro His Asp Arg Arg Cys Pro Thr
            180                 185                 190         
Thr Ile Asp Glu Ser Cys Trp Ser Asp Glu Ser Phe Cys Arg Asp Asn
        195                 200                 205             
Lys Leu Trp Phe Ala Leu Gly Lys Thr Ala Ala Glu Lys Ala Ala Trp
    210                 215                 220                 
Arg Ala Ala Arg Gly Arg Asp Leu Lys Leu Val Thr Ile Cys Pro Ala
225                 230                 235                 240 
Leu Val Thr Gly Pro Gly Phe Arg Arg Arg Asn Ser Thr Ala Ser Ile
                245                 250                 255     
Ala Tyr Leu Lys Ala Gly Ala Arg Ala Met Leu Ala Asp Gly Leu Leu
            260                 265                 270         
Ala Thr Ala Asn Val Glu Thr Val Ala Glu Ala His Val His Ala Tyr
        275                 280                 285             
Glu Ala Met Gly Asp Asn Thr Ala Gly Gly Arg Tyr Ile Cys Tyr Asp
    290                 295                 300                 
His Val Val Lys Arg Pro Glu Glu Phe Ala Glu Leu Glu Arg Gln Leu
305                 310                 315                 320 
Gly Leu Pro Gly Gly Ala Ala Pro Ala Pro Ala His Gly Ser Asp Asp
                325                 330                 335     
Arg Pro Ala Arg Phe Glu Leu Cys Lys Arg Lys Leu Ser Arg Leu Met
            340                 345                 350         
Ser Ser Arg Arg Arg Cys Ala Tyr Asp Thr Tyr Tyr Ser Val Ala Phe
        355                 360                 365             
Glu Val
    370 


<210> 5
<211> 406
<212> PRT
<213> Brachypodium sp.

<220> 
<223> Brachypodium Snl6 homolog, Brachypodium Sequence
      Resource Accession No. Bradi2g44800.1

<400> 5
Asn Phe Ala Asn His Thr Pro Pro Pro Gly Thr Thr Pro Pro Gly Glu
 1               5                  10                  15      
Thr Ser Ser Leu Gln Glu Gly Arg Ala Pro Ala Gly Val Ala Ala Ser
            20                  25                  30          
Ser Arg Ala Arg Gly Gly Met Gly Val Leu Arg Ser Thr Gln Ser Leu
        35                  40                  45              
Gln Ala Glu Val Glu Glu Met Arg Ala Ala Leu Leu Leu Pro Gly Gly
    50                  55                  60                  
Ala Ala Ala Gly Trp Lys Pro Ser Gly Gly Asp Ala Gly Gly Glu Glu
65                  70                  75                  80  
Gly Ala Ala Gly Pro Arg Thr Val Cys Val Thr Gly Gly Ile Ser Phe
                85                  90                  95      
Val Gly Phe Ala Ile Val Asp Arg Leu Leu Arg Gln Gly Tyr Thr Val
            100                 105                 110         
Arg Leu Ala Leu Glu Thr Gln Glu Asp Val Asp Lys Leu Arg Glu Met
        115                 120                 125             
Glu Met Phe Gly Glu Asp Gly Arg Asp Gly Val Trp Thr Val Met Ala
    130                 135                 140                 
Asn Val Met Asp Pro Glu Ser Leu His Arg Ala Phe Asp Gly Cys Ala
145                 150                 155                 160 
Gly Val Phe His Thr Ser Ala Phe Val Asp Pro Gly Gly Met Ser Gly
                165                 170                 175     
Tyr Thr Lys His Met Ala Ser Leu Glu Ala Lys Ala Ala Glu Arg Val
            180                 185                 190         
Ile Glu Thr Cys Val Arg Thr Glu Ser Val Arg Lys Cys Ile Phe Thr
        195                 200                 205             
Ser Ser Leu Leu Ala Cys Val Trp Arg Gln Asn Tyr Pro His Asp Arg
    210                 215                 220                 
Arg Gly Pro Ser Ile Ile Asp Glu Asn Cys Trp Ser Asp Glu Ser Phe
225                 230                 235                 240 
Cys Arg Asp Asn Lys Leu Trp Phe Ala Leu Gly Lys Thr Ala Ala Glu
                245                 250                 255     
Lys Ala Ala Trp Arg Ala Ala Arg Gly Arg Asp Leu Lys Leu Val Thr
            260                 265                 270         
Val Cys Pro Ala Leu Val Thr Gly Pro Gly Phe Arg Arg Arg Asn Ser
        275                 280                 285             
Thr Ala Ser Ile Ala Tyr Leu Lys Gly Ser Arg Asp Met Leu Ala Glu
    290                 295                 300                 
Gly Val Leu Ala Thr Ala Asn Val Glu Thr Val Ala Glu Ala His Val
305                 310                 315                 320 
Arg Ala Tyr Glu Ala Met Gly Asn Asn Thr Ala Gly Gly Arg Tyr Ile
                325                 330                 335     
Cys Tyr Asp His Val Ile Arg Arg Ala Glu Asp Phe Ala Glu Leu Glu
            340                 345                 350         
Arg Gln Leu Gly Ile Pro Ser Arg Thr Ala Ala Ser Val Leu Gln Ser
        355                 360                 365             
Gly Asp Glu Asp Arg Pro Ala Arg Phe Glu Leu Cys Lys Arg Lys Leu
    370                 375                 380                 
Ala Arg Leu Met Ser Ser Arg Arg Arg Cys Thr Tyr Asp Asp Tyr Tyr
385                 390                 395                 400 
Tyr Ser Val Thr Ser Pro
                405     


<210> 6
<211> 379
<212> PRT
<213> Oryza sativa

<220> 
<223> rice locus ID Os05g50250

<400> 6
Met Gly Val Leu Arg Ser Thr Gln Ser Met Glu Ala Glu Val Glu Glu
 1               5                  10                  15      
Met Arg Ala Ala Leu Ala Leu Ala Pro Leu Gly Arg His Gly Ala Trp
            20                  25                  30          
Arg Ser Gly Ala Ala Ala Lys Arg Glu Ala Gly Ala Glu Glu Gly Ala
        35                  40                  45              
Ala Pro Glu Ala Arg Thr Val Cys Val Thr Gly Gly Ile Ser Phe Val
    50                  55                  60                  
Gly Leu Ala Val Val Asp Arg Leu Leu Arg His Gly Tyr Ala Val Arg
65                  70                  75                  80  
Leu Ala Leu Glu Thr Gln Glu Asp Leu Asp Lys Leu Arg Glu Met Glu
                85                  90                  95      
Met Phe Gly Glu Asn Gly Arg Asp Gly Val Trp Thr Val Met Ala Asn
            100                 105                 110         
Val Met Asp Pro Glu Ser Leu Asn Gln Ala Phe Asn Gly Cys Val Gly
        115                 120                 125             
Val Phe His Thr Ser Ser Leu Ile Asp Pro Gly Gly Ile Ser Gly Tyr
    130                 135                 140                 
Thr Lys His Met Ala Ile Leu Glu Ala Arg Ala Ala Glu Gln Val Val
145                 150                 155                 160 
Glu Ala Cys Val Arg Thr Glu Ser Val Arg Lys Cys Val Phe Thr Ser
                165                 170                 175     
Ser Leu Leu Ala Cys Val Trp Arg Gln Ser Tyr Pro His His Arg Arg
            180                 185                 190         
Arg Phe Pro Ala Ile Ile Asp Glu Ser Cys Trp Ser Asp Glu Ser Phe
        195                 200                 205             
Cys Arg Asp Asn Lys Leu Trp Phe Ala Leu Gly Lys Thr Met Ala Glu
    210                 215                 220                 
Lys Ala Ala Trp Arg Ala Ala Arg Gly Arg Asp Leu Lys Leu Val Thr
225                 230                 235                 240 
Ile Cys Pro Ala Leu Val Thr Gly Pro Gly Phe Arg Arg Arg Asn Ser
                245                 250                 255     
Thr Pro Ser Ile Ala Tyr Leu Lys Gly Ala His Ala Met Leu Ala Glu
            260                 265                 270         
Gly Leu Leu Ala Thr Ala Asp Val Glu Arg Val Ala Glu Ala His Val
        275                 280                 285             
Arg Val Tyr Glu Ala Met Ser Gly Gly Gly Ala Ala Gly Gly Arg Tyr
    290                 295                 300                 
Ile Cys Tyr Asp His Val Val Arg Arg Gly Glu Glu Phe Ala Glu Leu
305                 310                 315                 320 
Gln Arg Gln Leu Gly Leu Pro Ile Thr Gly Val Ala Ala Ala Ser Arg
                325                 330                 335     
Pro Gly Tyr Ser Asp Asp Gly Asp Val Gly Gly Asp Gly Arg Phe Ala
            340                 345                 350         
Leu Cys Asn Gly Lys Leu Ala Arg Leu Val Ser Ser Arg Arg Arg Cys
        355                 360                 365             
Thr Tyr Asp Val Tyr Tyr Pro Ala Ser Tyr Asp
    370                 375                 


<210> 7
<211> 6506
<212> DNA
<213> Oryza sativa

<220> 
<223> suppressor of NH1-mediated lesion formation 6 (Snl6)
      genomic DNA, cinnamoyl-CoA reductase-like family

<400> 7
atgcgggcgg cgctgctgca tggccacggg ggcggggcgg cggcggcggc ggcggccggg 60
tggcgcccct cggccggcga cgcggacgtc aagcgcaccg cgggcggcga cgggggcgcg 120
gcggggccgc gcaccgtctg cgtcacgggc ggcatctcct tcgtcgggtt cgccgtcgtc 180
gaccgcctgc tccggcacgg ctacaccgtg cgcctcgccc tcgagaccca aggtcagctc 240
caaatccagc tcacccccac atcttttacc gtttacctgt tcgattacct cctttgcctt 300
gtttggctgt ttcgcttctg tgtcaccgac atgtgggccc cggtcgccac atgtatctca 360
aagccccggc cacttgtgcc aatacattcc acgtattttt attattttat atacctcggc 420
aaaaaaaaca aacatgaaaa aacaaaaacg ctcgtgccta gcatgacgta ccccttcgct 480
agttcgctgt atccaatttc tggactttat ctcgcagcag tagattttac ttctaccagc 540
ttattgagcc gatcagtctt ccaatccatc ttaattacca ctcgtttttg gacaaaaggc 600
aagcgacttc ccagcataaa ccaagcttag ttgctgttca agccggatta gcagatactc 660
tgcgtctcct cccgaagtgt tgttggggat ggaaccttgc cacctaccgc tgcactgcgg 720
gtttggtgtg ctacctgcag tccggtcacc atttcgtcac atctccatag accggttgct 780
agcttggagt agctaggaac tactacgctg catcttcccg tcagtagaat ttgctttcgt 840
tggataatgg cgtaacgctc tttgacggtg tatatccatt tgcgaataga gaccaaacta 900
aaaaaaaaaa tattggcata atgctctgct cgggctggtg ggtggtatgg cagccacttt 960
cctatgcaca gtgtgcatgt agccgtgaga gtatacctaa tgatgattgc ttttatgctt 1020
tggtgaatat aaccaactta attacctact tggaaatgac agaccgaaag aaacgtgcga 1080
aagctaaaga gaggaacata tacgtttatg tctaattcgc cacacacaag gaaaaacgga 1140
agaaaaaaac aaatgctaac aaggagtagg attgatggga ggtggtagct agactgaatt 1200
agtttaagac gtacgcaacc atctctatga tcgatcagcg ttgaacattt gactactcgt 1260
atatataaag ctaccgggcg tatgatttcc tcgtgtagta gttagttatt ctcgcattcg 1320
ttttttcctc gtgctatatg cacaatcttt ggatgcattc aaaacattct gattgtgact 1380
ttctccatat accaatgggc tcatgcttat ggcgtaacat taaacttttc gccggttttt 1440
attcttgttc tggtggtcag ccggtttctt ggaaagagga aattgatcgt agtttcaaag 1500
tctcctatac gactcgtcca gttggggatg aaacaatcta caaatcaaac actagcagag 1560
acgtacgcag aatttttttt tccactggca gcaccatttt tctttgaccc gaggtagaaa 1620
tcttcaggtc taccacatca tgattagatt tcaaccaacc agtgctccaa ttcggatacc 1680
cattttaaca ttgcgccact aattagtcag ctttgtgttg cttagttgag ccatacttta 1740
cgcgttctga tccttcacat cagctaacaa atccaatcct tcccctgaac caaaatcttt 1800
cagtactgct cccttcaatt ccctagcaag aaagcagaga acctttcgac aaacaaatag 1860
tgttgatact aattataagt gggtgctgga cttctgatag cttcgtttca acagtctaca 1920
cccaagggcc attaggaaaa tttatctgat gatagcttag ctccaatctt aatctggaac 1980
aacatgtctg gtccattagg cctccactgg aatagaggaa tatcacggga gttgaactaa 2040
ttcttgtgaa aatcctgtag aagtcatgcc tttatcttta tgctatcact accattctct 2100
aagtcatcgc ggataagaaa ccatgggcaa gaaaattttc agaatatcaa aaagataaaa 2160
tcctctctcc ggtttcccag ccagctacga atagttggaa acacacctgc tgcttggcta 2220
tgcttataat agtggaacat gattcatatt tctggttttc aaatggagtc aggtgagaag 2280
gatggaacga gattattgat aaagtaccgt tccaaaaacg ttcttatcct tatcggacaa 2340
ttatcaatga tagataacag aaagtaaaat cacacggcat catcgctatt attttattaa 2400
agcaacatgg cttctttttt tttgtgagta ttcatgcaac catcgtaatc ttgacgtgta 2460
ataatttggc ttattgctat ttgctacatc gcagaggacc tggacaagct gagggagatg 2520
gagatgttcg gcgaggacgg ccgggacggc gtgtggacgg tgatggcgaa cgtgacggac 2580
cccgagagcc tgcaccgggc gttcgacgga tgcgccggcg tgtttcacac ctcggcgttc 2640
gtggatccgg ggggcatgtc cggctacacg gtgagtgcac caaactcggt ccctaacctt 2700
aagatcctcg caactactac acctacctat gttatgtgtt ccctaatgct gtcacagaag 2760
tcactaagta agttagttat gtgttcccta atgctgtcat atagaagtca ctaaataagt 2820
taggttagta aaatatagaa aaaatcatgc aaacaaaaca gagtgaactt gaagagaatg 2880
gcggaaaaca gagtatatat gctccatcta acattctaac tcaaggcgca actgaacatc 2940
aaagattgat gttgaatgtt tggtgtacta taaaaagagc aatattattt atggtcgtta 3000
agaaggtatc aagaagtact acaattttac tagaagacac taaattttac aattaaaaaa 3060
agatacctcc tgatacacca taaaataact cgtaaaagga acattgcgat tttctttgtg 3120
gtgatgtggt ggggacccag taacagtctg aacttctgga aatcaagcaa ttaattgaca 3180
cataacggcg ttcgggaatt tttgaagcca atggacatag atcattttcg taattaatgg 3240
catgcacatc acagagcctc agacatctgg cccagagaaa tttgtacagt tgagctgtag 3300
agtttgcatc tacatgtaca tggcctttgg tactgcacgt ggaggcactc atgcctcaaa 3360
attcagaaag attttgtaag accgagtgac gagactctgt agttcgtgta ccacacgggg 3420
aagattctgc tcattcttgg cttctcctcc caagagacac caaatagttt atggtacccg 3480
ttatctagaa acgttgggcg ctgcggtgtc catcacagat gttaacggtt ataccttcca 3540
tggttactta aaaactgaga ccttgctgat tgtcgattcc attggtcgta cagtagtatc 3600
aagatttcaa aaatgacaaa ccagtactat tgactgatgt gaagagcggc agatgccata 3660
aaactagcct tatttcgagc agacttaata aaaaaagggt ttatagaaaa aggctcaatc 3720
accaactcgt accttcaagg attattttgt ttacgagcca atgtcttgtt tgttgccaaa 3780
ggcagggtgg gagaggatct tgaggctgga cagtcctcct tgtcgccctt tcgttgacat 3840
tttgccaaac ctgaagtcct cctgatggga gcaggttgta actggtagtc ctgcctatgc 3900
agatggtctt gcacctatct gatccatgaa gtagagcttc cggagcacag cattggtggg 3960
cgcacgcctg tcaactccgt cacctaattc attgacagaa aatcgcttgt ccatagcagg 4020
ggaccgggtt tattatctga taagaacggg taatcaggta ggattagtat ctgagtgtga 4080
tgagagtccg cattgcagca agagttggac aatacaacca ccgaatccac ttcggttggg 4140
tacttccaag cagccgtcag aatcatgacg accttagtgt aaccaaggcg attaaagaac 4200
agagatgcca tccagttgcg tcctactctg caacaatata tactccctct cttttagatt 4260
tattaacata tatataaata taggcaatat tataaaatct tatattgtga aatgcacaat 4320
agagggagta tgctagtaat aggctttatt ttactgttct tgaatacctt tatttttttt 4380
accattcttg ttccacacaa tataacctct ttttaatgga agaaatttgc tgcaatttgg 4440
aggaaatgaa ctggttcaat gaaaatcctg taaaatttat gcgtttcaaa gtagccctac 4500
gttcgatttt gctatatatt tgtcgacaaa ttttccccta aaaatttaac agatgtaatt 4560
acagtacaat cgtagtgtaa ttacactata acttgcatgt aattacactg taactatagt 4620
gtaacttgta tgtaactttc aaaaatctct ccgtaatatg ttatttcgat aaaatggagg 4680
tcgtgggaac aaattctttc acatatgtgt gtactatgat ttgttttctt cctcaccaaa 4740
acaaatcttg taatagatct aacaattcaa aattatgtga aacttacata taagttacac 4800
tgtagttaca tgcaagttac agtgtaatta catatatgtt acagtgtaat tacattatga 4860
ttgtattata attacatctg tcaaattttt aggagaaaat ttgtcaacaa atgtataggt 4920
agtcccccct acgtttggta tctcaatcac actagtgttt atcatttatc tgcagtaaga 4980
gcctattgta gctaaaataa accttaccaa attttggtat tgccaaaatt ttggcaagat 5040
gacaatattg cgaaaatttt ggcaggatat cttatgtatt tacttaattt ggcaacaaac 5100
taaatataga tattttttaa caactttaca ttaaaaaaat ggtatggttg aaaatagcat 5160
caaagtgaac gggcctgatt ttcgctagtg gaccgttcgc tctcacccat cattcctggt 5220
agtcaattct tgtgtagtca tggtaatttg ttgtttagta gcgattgggc gtacgattga 5280
ggcggtgtaa ttaacttttt ccctgttaat gtccaactct cgaacagaaa catatggcaa 5340
gcttggaggc gaaagcagca gagcaggtga tcgaggcgtg cgtgaggaca gagtccgtca 5400
gaaaatgcgt cttcacgtcg tcgttgctag catgtgtatg gaggcaaaat taccctcatg 5460
accgacggtt tcctaccatc atcgacgaga actgctggag cgatgagagc ttctgccgtg 5520
acaacaaggt gagtttgtta ctgtattaaa aaaaaaagga gggtttgttc agtgacacgg 5580
aagcgcactt gcaatggtgg atgcataagc atattttatc acccaccaac tgaatctttt 5640
ttttttcttg tggaaaattt gtgcaatcta atgactttct ggataaactt ttcagctgtg 5700
gtttgcactg ggcaagacgg cagcggagaa gacggcgtgg agggcagcca ggggtaggga 5760
cctgaagctg gtcaccgtct gcccggcgct ggtcaccggt ccgggattcc gccgccgcaa 5820
ctccaccgcc tccatcgcct acctcaaagg tacactacag gcttcgatac gagcatgtaa 5880
actacgatcg gagaaaggaa catggtgtgc ctttgtgctt gtgcagtaca cactgacatg 5940
tcttgcgtgt cgacaggggc tcgcgccatg ctcgccgacg gcctgctcgc gacggcgagc 6000
gtggagacgg tggcggaggc gcacgtccgg gtgtacgagg cgatgggcga caacacggcc 6060
ggcgggaggt acatctgcta cgaccacgtg gtgaagaggc ccgaggagtt cgcggagctg 6120
gagcgccagc tggggatccc gcgcagagcg gcggcggcgg cggccgcgca ggactccggc 6180
gaccggccgg cgaggttcga tctgtgcagg cagaagctgg cgaggctcat gtccacccga 6240
aggcggtgca cgtacgacga ctactactcc gtcgcattcg actagatatc tagctaggct 6300
aggcaaactg gcgagcacca ccgtgcaatg gcttgcagca ctgcaccaat gatggatcat 6360
ctgggttggg ttttgcctga agggtgcaag aggacgaagt cgtagtggat ggatggaaga 6420
agagtgtgtg acatcatgta catagtgcga tcttgtaggc tgtttgatgc atcaataaag 6480
cttgatcgag ccccattttt tggcta                                      6506

<210> 8
<211> 4
<212> PRT
<213> Artificial Sequence

<220> 
<223> synthetic DEAD-box motif

<400> 8
Asp Glu Ala Asp
 1              


<210> 9
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Xa21 genotyping forward primer H3 frag F

<400> 9
atagcaactg attgcttgg                                              19

<210> 10
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Xa21 genotyping reverse primer 3' Xa21 R

<400> 10
cgatcggtat aacagcaaaa c                                           21

<210> 11
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic NH1ox genotyping forward primer Ubi-1

<400> 11
tgatatactt ggatgatggc a                                           21

<210> 12
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic NH1ox genotyping reverse primer PrNH22

<400> 12
ggacggcgat gcgcgcgtc                                              19

<210> 13
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 1A genotyping forward primer
      Os01g21420_F

<400> 13
agcaggaggg agaagacaca                                             20

<210> 14
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 1A genotyping reverse primer
      Os01g21420_R

<400> 14
accaggaagc aaagcaaaga                                             20

<210> 15
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 1B genotyping forward primer
      Os01g45160_F

<400> 15
gaagacgaac cgcgtctg                                               18

<210> 16
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 1B genotyping reverse primer
      Os01g45160_R

<400> 16
ggtgtcacct ctgatcacct g                                           21

<210> 17
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 2 genotyping forward primer
      Os02g33730_F

<400> 17
gttgcttgtt ggtgggaact                                             20

<210> 18
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 2 genotyping reverse primer
      Os02g33730_R

<400> 18
tccgtgggaa aatcaaagac                                             20

<210> 19
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 3 genotyping forward primer
      Os03g56234_F

<400> 19
tcctcagcag cttaccacct                                             20

<210> 20
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 3 genotyping reverse primer
      Os03g56234_R

<400> 20
tgcgtcgaac aagacgatag                                             20

<210> 21
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 7 genotyping forward primer
      Os07g35810_F

<400> 21
tacaccggta atccgatggt                                             20

<210> 22
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Deletion 7 genotyping reverse primer
      Os07g35810_R

<400> 22
ggcccaagga ctaaggtctc                                             20

<210> 23
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic PCR amplification primer for 425bp from
      the 3' end of LOC_Os01g45200

<400> 23
gaattcaggc ttcgatacga gcatgt                                      26

<210> 24
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic PCR amplification primer for 425bp from
      the 3' end of LOC_Os01g45200

<400> 24
agatctgtcg aatgcgacgg agtag                                       25

<210> 25
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic NH1 real-time quantitative RT-PCR
      forward primer NH1_RT_S2

<400> 25
caggtgagag tctacgagga agg                                         23

<210> 26
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic NH1 real-time quantitative RT-PCR
      reverse primer NH1_RT_AS2

<400> 26
ttgtctttca ggaggtggat ttgc                                        24

<210> 27
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Os01g45190 real-time quantitative RT-PCR
      forward primer BB190_RT_S1

<400> 27
gctatcggtg acttcatcaa tatc                                        24

<210> 28
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Os01g45190 real-time quantitative RT-PCR
      reverse primer BB190_RT_AS1

<400> 28
agactctgcc aggtgttcc                                              19

<210> 29
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Os01g45200 real-time quantitative RT-PCR
      forward primer 200_RNAi_F2

<400> 29
caccgtggac ggtgatggcg aacgtg                                      26

<210> 30
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic Os01g45200 real-time quantitative RT-PCR
      reverse primer 200_cDNA_R2

<400> 30
gcaacgacga cgtgaagacg c                                           21

<210> 31
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 03g18850 real-time quantitative RT-PCR
      forward primer

<400> 31
agttcctgga cgtggacaag                                             20

<210> 32
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 03g18850 real-time quantitative RT-PCR
      reverse primer

<400> 32
tctcgtcctt cacctccact                                             20

<210> 33
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 12g36850 real-time quantitative RT-PCR
      forward primer

<400> 33
acgcagggag cgtatacaag                                             20

<210> 34
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 12g36850 real-time quantitative RT-PCR
      reverse primer

<400> 34
caccctgctc ttaacctcca                                             20

<210> 35
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 02g41650 real-time quantitative RT-PCR
      forward primer

<400> 35
ggcctccaca tcgctcgc                                               18

<210> 36
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic 02g41650 real-time quantitative RT-PCR
      reverse primer

<400> 36
acggcctcgc ggtcga                                                 16

<210> 37
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic ubiquitin real-time quantitative RT-PCR
      forward primer UBQ5_F

<400> 37
atggccaacc acttcgaccg                                             20

<210> 38
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> synthetic ubiquitin real-time quantitative RT-PCR
      reverse primer UBQ5_R

<400> 38
taagcctgct ggttgtagac gt                                          22


