                         SEQUENCE LISTING

<110>  Children's Memorial Hospital
 
<120>  Selective Enrichment of CpG Islands

<130>  11761-67

<150>  US 12/767,382
<151>  2010-04-26

<160>  41    

<170>  PatentIn version 3.5

<210>  1
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  1
cgcgcgcgcg                                                              10


<210>  2
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic adaptor


<220>
<221>  misc_feature
<222>  (23)..(23)
<223>  3' linked to 2'-3'-dideoxycytidine

<400>  2
gagagtggaa gaaagtccac tct                                               23


<210>  3
<211>  49
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  primer

<400>  3
ctgccccggg ttcctcattc tcttcaaaaa taaactttct tccactctc                   49


<210>  4
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic adaptor


<220>
<221>  misc_feature
<222>  (41)..(41)
<223>  3' linked to 2'-3'-dideoxycytidine

<400>  4
atcaccgact gcccatagag aggaaagcgg aggcgtagtg g                           41


<210>  5
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic adaptor

<400>  5
ccactacgcc tccgctttcc tctctatggg cagtcggtga t                           41


<210>  6
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  6
ssssssssss                                                              10


<210>  7
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  7
ssssssssss s                                                            11


<210>  8
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  8
ssssssssss ss                                                           12


<210>  9
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  9
ssssssssss sss                                                          13


<210>  10
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  10
ssssssssss ssss                                                         14


<210>  11
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  11
ssssssssss sssss                                                        15


<210>  12
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic probe

<400>  12
sssscgssss                                                              10


<210>  13
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic adaptor

<400>  13
gctggagtgg aagagaatga ggaa                                              24


<210>  14
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic adaptor

<400>  14
agggttcctc attctcttcc actccagc                                          28


<210>  15
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic blocking oligonucleotide

<400>  15
aaattcctca ttctcttcca ctccag                                            26


<210>  16
<211>  8
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic probe

<400>  16
sssssscg                                                                 8


<210>  17
<211>  176
<212>  DNA
<213>  Homo sapiens

<400>  17
gcgcggaggc gccgctgtcc ccgctgcggg actcggtttc gggaatggaa aagtgtatgt       60

tccctacggc acgggacggc cgggctccgg actgtgaggg tcacagcggc tctgcacgcc      120

ccccctccgc tgctcagcga ttccccgcag gctcactcgc cattttggga gtcctg          176


<210>  18
<211>  151
<212>  DNA
<213>  Homo sapiens

<400>  18
agcttcggtg ctgcgaggtg aaagattgtt tcttgctatg ttgcccacgc tggtctcaaa       60

ctcctgggct caaggaagtg gtggagagaa tacttgtgtt ggatggggag ttttccttac      120

tgtcctccac agagtttatc ttccatttgg g                                     151


<210>  19
<211>  135
<212>  DNA
<213>  Homo sapiens

<400>  19
aaatctctca gcatttgctt gtctgtaaag gatcttattt ctccttcagt tatgaagctt       60

agtttggctg gatatgaaat tctgggttga acattctttt ctttaagaat gttgattact      120

ggcccccact gtctt                                                       135


<210>  20
<211>  200
<212>  DNA
<213>  Homo sapiens

<400>  20
cagcacatag tgctggcttc ccagggctgg ggacaccttc caactctctc cctctcatct       60

ctctcccgct ctctctctct ctccaaagca agtggatgag catcgctgag catcttggat      120

ctgcatcgtc cagtttctgg ggatagaata cagaattgat aggtacatct ttatttctcc      180

ctacaacatg tattcttgtg                                                  200


<210>  21
<211>  486
<212>  DNA
<213>  Homo sapiens

<400>  21
gaggcattgt aaccctgccc tagagatctg tggaactttg aacttcagag tgatggtttt       60

gggtatctgg tggaaaaaaa ttctaagcag caaagcattc aagatatggc ttggctgctt      120

ctaacaacat atgctcatat gtgtaggcaa agagatgatc tgaaactgga acttattttt      180

aaaaagggaa gcagagcata aaagtttaga aaatttgcag cctcaccatg tggtagaaaa      240

taaagaccca ttttctgggg aggaaatcaa gcaagctgca gaaatttgca taggtaaaga      300

tggaatgtta atagcccaga caatggggaa aatgcctcaa aggcatttca gaaaacttca      360

aggcagcctc tcccatcaca ggcccatagg gaggaatggt tctgtgagct gggcccaggg      420

tcctgctgcc ctgtgcaacc tcaggacact gctgtctgca tcccagccac tccagctcca      480

cctgtg                                                                 486


<210>  22
<211>  407
<212>  DNA
<213>  Homo sapiens

<400>  22
ggcggagccg ccgctggtcc ccgctgcggg actcggtttc gggaatggaa aagtgcatgt       60

tccctacggc acggcacggc cgggctccgg actgtgaggg ccgcagcggc tctgcacgct      120

ccccctccgc tgctcagcga gtccccgcag cctcactcgc cattttggga gccctgcgat      180

ccgatgtggg aaggcggtgg gacgtcggtt ctgggacgca atcgcctggg catgctggga      240

actgtagtct aaagggcaag agccacctgt ccggataggg agcccaaagt ggagttggcc      300

ctcattgcaa cccgtagtgc ggggcggggc ctcggggccc gtcggaaatt gtagtccgat      360

tggggctgcg cgcttcgctt ctgcggctca gcctccagcc caggtgg                    407


<210>  23
<211>  258
<212>  DNA
<213>  Homo sapiens

<400>  23
ccacctgggc tggaggctga tccgcagaag cgaagcgcgc agccccaatc ggactacaat       60

ttccgacggg ccccgaggcc ccgccccgca ctacgggttg caatgagggc caactccact      120

ttgggctccc tatccggacg ggtggctctt gccctttaga ctacagttcc cagcatgccc      180

aggcgattgc gtcccataac cgaggtccca ccgccttccc acatcggatc gcagggctcc      240

caaaatggcg agtgaggc                                                    258


<210>  24
<211>  170
<212>  DNA
<213>  Homo sapiens

<400>  24
ccaggaaggc tggcgggccg ccgtgtccat tgagatagtg ctccaggcac tccataaaga       60

aaatgatcac aatgggaaga aaccagctga ccatgagacc aagttccaac cttttacaag      120

tggcctgtgg ctcctggcgc cccccccaca gctgacaggg gctcacaagt                 170


<210>  25
<211>  223
<212>  DNA
<213>  Homo sapiens

<400>  25
ccacctgggc tggaagatga gccgcagaag cgaagcgcgc agccccaatc ggactacaat       60

ttccgacggg ccccgaggcc ccgccccgca ctacggggtg caatgagggc caactccact      120

ttgggctccc tatccggaca ggtggatctt gccctttaca ctacagttcc cagcatgccc      180

aggcgattgc gtcccaggac cgacgtccca ccgccttccc aca                        223


<210>  26
<211>  155
<212>  DNA
<213>  Homo sapiens

<400>  26
cctactcagt tccatcttgt tcacttcagt ccactggttc ggactgtcat gaggtctttt       60

ctgtctggac aatttcctcc accacattat cctcccctgt gagctttgat ctgcacattt      120

gacacatagg tctgttacag ctcatccagt tcatt                                 155


<210>  27
<211>  329
<212>  DNA
<213>  Homo sapiens

<400>  27
ccaggagggc tggagggccg ccgtgtccat tgatagagtg ctccacgcgc tccaaaaaga       60

aaatgaccac aataggaaga aaccagctga ccatgagacc aagttccaac cttttacaag      120

tggcctgtgg ctcctggcgc cccgcccaca gctgacaggg gctcagaagt gctaggggga      180

ccatgggcca ccagggccac caggagggag gcatgtaacg atgcgagggc ttggatgcag      240

aacaccagct ggtttgattc tgttttccct gtacctgggt cctgattgcc cacaggctca      300

gggaaacacc agccactgct gctgccttt                                        329


<210>  28
<211>  395
<212>  DNA
<213>  Homo sapiens

<400>  28
gggccgccca gcccgccctt ctctatttgg tgccatttac tttattgcca ctcctcacga       60

tggcctattt aagggtgaga gcagcagtta taaacctgtg aaagcaataa cttggattgg      120

cctgtgcctc ggtttgcact ctcctcgctg gaggtgattc tgcttaagcc cctgagtgag      180

cttgtgatct cgactgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgcgcg      240

cgcgctaccc tggggagagg gggaagctgg gtgaggttcg catggacctt ggggagtccg      300

ggctggggga ccgttcataa gaagagtcag acacgaccct actgttctta ggtgcataca      360

tgattaggaa acctgcagct cccagggggc cctac                                 395


<210>  29
<211>  446
<212>  DNA
<213>  Homo sapiens

<400>  29
gaatggaatg caatggaatg gaatcaaccc gagtgcaatc gaacggaatc gaatggaatg       60

gaatgcaatg gaatggattc aacttgaatg gaaaggaaag aatggaatca acacgagtgg      120

aatggcatgg attggaatgg aatggaatgg aatcaacccg agtacagggg aatggaatgg      180

aatggaatgc aatgcaatgg aatcatcagt aatggaatgg aaaggaatgg aaaggactgg      240

aatggaatgg aatggaatgg aatggaatgg aatcaactcg actgcaatcg aatggaatgt      300

aatggaatta acccgcatag aatggaatgc aatggaaggg aacggaacgg aatggaatgg      360

aatggaatgg aatggaacgg aaaggaatgg aatggaatgg taccgacctg cccgccgttc      420

ccccactgtc cggctggctg aacccg                                           446


<210>  30
<211>  220
<212>  DNA
<213>  Homo sapiens

<400>  30
aaaagcaggg ccagggggcc ggcagcaagg tgcacgaatt ccagacgctg gtgtgacctt       60

gggggaccct gggcatggac caggccaggg cccagaacca agcaattgag acatcttggg      120

aaaggaagtg aatcacctaa cttagaaatg tccctttctc ggtcaccggc ggcctgggac      180

agcccttcgg ggactgcccc cacgcctggc gagggggaag                            220


<210>  31
<211>  128
<212>  DNA
<213>  Homo sapiens

<400>  31
tcatacaaag ggatggagtg gaatagactg gaatgacgaa ttgaaatatg agttgagatt       60

gtgccactgg actccagcat gagtgacaga gtgaaatact cttgaaagaa agaatggaat      120

ggaaagga                                                               128


<210>  32
<211>  241
<212>  DNA
<213>  Homo sapiens

<400>  32
cctctcctgg tcctgggtgg ttcagtctgt gaggtagaaa acctgtgagc acaattctat       60

gtatctgact ttgcgtgaag ggtcagtagt gatttcaagg ctcttggcta cagcatctca      120

aagaatagag cagtgtttga ttgacatggc agaactagag gaagagcagg catggtttac      180

gggttagtga tttaagagct cacgtttgag catgtttagt gtgaagatct attacccatc      240

c                                                                      241


<210>  33
<211>  385
<212>  DNA
<213>  Homo sapiens

<400>  33
ccctccgggg ctggtggaag aatcagctga taacaaggga gttcccccac aaattacagc       60

aacacccgcg ctgcgcccaa gacacctggg cccctactgt gtgctgggtg cttgcacttg      120

ggaaggctcc agagggtact tagtcccatt tcatagacgg tcaagcggag gccttcccga      180

aggtctcacg ggaggtattg caggtatgtg gggctcaaag ctctggcttt ttctgagatg      240

cggatttgaa cttcctcaca ccactgtcgt gaatccacat cccggctcct ccacccctca      300

gccttccatg cttccccctc cccaggcttg ggggcagtcc ccgatgggct gtcccacgcc      360

gccgctgacc gagaaagggg cattt                                            385


<210>  34
<211>  517
<212>  DNA
<213>  Homo sapiens

<400>  34
gaatggaatg caatggaatg gaatcaaccc gagtgcaatc gaacggaatc gaatggaatg       60

gaatgcaatg gaatggattc aacttgaatg gaaaggaaag aatggaatca acacgagtgg      120

aatggcatgg attggaatgg aatggaatgg aatcaacccg agtacagggg aatggaatgg      180

aatggaatgc aatgcaatgg aatcatcagt aatggaatgg aaaggaatgg aaaggactgg      240

aatggaatgg aatggaatgg aatggaatgg aatcaactcg actgcaatcg aatggaatgt      300

aatggaatta acccgcatag aatggaatgc aatggaaggg aacggaacgg aatggaatgg      360

aatggaatgg aatggaacgg aaaggaatgg aatggaatgg aaccgacctg cccgccgttc      420

ccccactgtc cgctggttga acccggcagc ggagagagaa ggaaaggcac aaaggcagtg      480

actggctcat atcccagccc cgcgcacctg tggcggg                               517


<210>  35
<211>  328
<212>  DNA
<213>  Homo sapiens

<400>  35
agcttaggct gctggagcaa gatcaagagc ctgtgctgga ggacgcttaa agagcctcca       60

gtttttcagc cagtggcatg atatcaggtc ctgtaagtgg agactcgcag aattgcacaa      120

tccgggctcc cttcctccca ccacttcgtt gtatcggggc agagcaaggc ttgacgatgt      180

gtggcatacc tgtggtgggg tgtcatccac gcatccagca cacagccgct gagcgcccac      240

cgcctccccc atctctgctg gggaccaggt ttagtccact ttcatttata gctaacattg      300

ttatgtgtga atttgatcct gtcattat                                         328


<210>  36
<211>  209
<212>  DNA
<213>  Homo sapiens

<400>  36
acaagcctct agtaaggatc acgtatttga atcacagttg agaggtacaa caaccactac       60

atcagaataa gctcaggaaa taaaacctta aagtgaacaa atttggagga ggaatgattt      120

ttttttcctt cataaaaaca agtcagaaag gaaataaaat ccacatttaa aactcccaac      180

tgttttttga aacgagtatt ttcttcatt                                        209


<210>  37
<211>  317
<212>  DNA
<213>  Homo sapiens

<400>  37
ggcggagccg ccgctggtcc ccgctgcggg actcggtttc gggaatggaa atgtgcatgt       60

tccctacggc acgggacggc cgggctccgg actgtgaggg ccgcagcggc tctgcacgct      120

ccccctccgc tgctcagcga gtccccgcag cctcactcgc cattttggga gccctgcgat      180

ccgatgtggg aaggcggtgg gacgtcggtt ctgggacgca atcgcctggg catgctggga      240

actgtcgtct acagggtaat gagccacctg tccggatagg gagcccaacg tggagttgcg      300

ccctcattgc aacccgt                                                     317


<210>  38
<211>  261
<212>  DNA
<213>  Homo sapiens

<400>  38
cccaggctgg agtgcaatgg tgcgatctcg gttcagcgca gcctccgcct cctggtttca       60

agtgattctc ctgactcagc ctcctgagta gctgggatta caggcatgtg ccaccactcc      120

cggctaactt tttgtacttt tagtacagat ggggtttcac catgttggcc aggctggtct      180

cgagctcctg gcctcgcgat ccgcctgcct cgggctccca cagtggtatt caacccgagt      240

gttatggaaa tgaatgaagt g                                                261


<210>  39
<211>  546
<212>  DNA
<213>  Homo sapiens

<400>  39
agatacagag tgtccattgg tgcactcaca aaccctgtag ctagacacag agtgctgact       60

ggtatgttta caatccctga gctagacata aaggttctcc aaggccccac cagagcagct      120

aaatacagag tgtcgattgg tgcactcaca aaccttgagc taaacacagg gtgctgactg      180

gtgtatttac aatccctgag ctagacataa agactctcca cgtcctcacc agactcagga      240

gcccagctgg cttcacctag tggatcccgc accagggctg caggtggagc tgcctgccag      300

tcctgcgctg tgcgctcgca ttcctcagcc cttgggtggt cgctgggact gggcgccatg      360

gagcaggggg tggtgctcgt cggggaggct cgggccgcac aggagcccat ggagtgggtg      420

ggaggctcag gcatggcggg ctgcaggtcc tgagccttgc cccgcaggaa ggcagctaca      480

gcccggtgag aaatcgagca caacgccggt gggccggcac tgctggggga cccagtacac      540

cttccg                                                                 546


<210>  40
<211>  149
<212>  DNA
<213>  Homo sapiens

<400>  40
cccaggtggg agtgtattgg cacaatcgcg gctcactgca acctcttcct tctgggttta       60

agtgattctc ctggagcagc ctcctgaata gctgggatta caggcgcatg ccactgcgcc      120

caggcccaga ggggactttt tatacagaa                                        149


<210>  41
<211>  157
<212>  DNA
<213>  Homo sapiens

<400>  41
cacggagcag gactccgtct taaaagaaaa aaaggatagc cgggcgcact ggctcacgcc       60

tgtaatccca gcactttggg aggccgaggt gggtggatca caaggtcacg agttcgagac      120

cagcctggcc aatacagtga acccccgtct gtactaa                               157


