                         SEQUENCE LISTING

<110>  Gill, Rosalynn D.
       Grimaldi, Keith A.
 
<120>  Methods for Determining Gene-Nutrient Interactions

<130>  5588-12-PCT

<140>  not yet assigned
<141>  2011-02-24

<150>  61/307,526
<151>  2010-02-24

<150>  61/307,522
<151>  2010-02-24

<160>  11    

<170>  PatentIn version 3.5

<210>  1
<211>  633
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  GSTP1 coding

<400>  1
atgccgccct acaccgtggt ctatttccca gttcgaggcc gctgcgcggc cctgcgcatg       60

ctgctggcag atcagggcca gagctggaag gaggaggtgg tgaccgtgga gacgtggcag      120

gagggctcac tcaaagcctc ctgcctatac gggcagctcc ccaagttcca ggacggagac      180

ctcaccctgt accagtccaa taccatcctg cgtcacctgg gccgcaccct tgggctctat      240

gggaaggacc agcaggaggc agccctggtg gacatggtga atgacggcgt ggaggacctc      300

cgctgcaaat acatctccct catctacacc aactatgagg cgggcaagga tgactatgtg      360

aaggcactgc ccgggcaact gaagcctttt gagaccctgc tgtcccagaa ccagggaggc      420

aagaccttca ttgtgggaga ccagatctcc ttcgctgact acaacctgct ggacttgctg      480

ctgatccatg aggtcctagc ccctggctgc ctggatgcgt tccccctgct ctcagcatat      540

gtggggcgcc tcagcgcccg gcccaagctc aaggccttcc tggcctcccc tgagtacgtg      600

aacctcccca tcaatggcaa cgggaaacag tga                                   633


<210>  2
<211>  210
<212>  PRT
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  GSTP1

<400>  2

Met Pro Pro Tyr Thr Val Val Tyr Phe Pro Val Arg Gly Arg Cys Ala 
1               5                   10                  15      


Ala Leu Arg Met Leu Leu Ala Asp Gln Gly Gln Ser Trp Lys Glu Glu 
            20                  25                  30          


Val Val Thr Val Glu Thr Trp Gln Glu Gly Ser Leu Lys Ala Ser Cys 
        35                  40                  45              


Leu Tyr Gly Gln Leu Pro Lys Phe Gln Asp Gly Asp Leu Thr Leu Tyr 
    50                  55                  60                  


Gln Ser Asn Thr Ile Leu Arg His Leu Gly Arg Thr Leu Gly Leu Tyr 
65                  70                  75                  80  


Gly Lys Asp Gln Gln Glu Ala Ala Leu Val Asp Met Val Asn Asp Gly 
                85                  90                  95      


Val Glu Asp Leu Arg Cys Lys Tyr Ile Ser Leu Ile Tyr Thr Asn Tyr 
            100                 105                 110         


Glu Ala Gly Lys Asp Asp Tyr Val Lys Ala Leu Pro Gly Gln Leu Lys 
        115                 120                 125             


Pro Phe Glu Thr Leu Leu Ser Gln Asn Gln Gly Gly Lys Thr Phe Ile 
    130                 135                 140                 


Val Gly Asp Gln Ile Ser Phe Ala Asp Tyr Asn Leu Leu Asp Leu Leu 
145                 150                 155                 160 


Leu Ile His Glu Val Leu Ala Pro Gly Cys Leu Asp Ala Phe Pro Leu 
                165                 170                 175     


Leu Ser Ala Tyr Val Gly Arg Leu Ser Ala Arg Pro Lys Leu Lys Ala 
            180                 185                 190         


Phe Leu Ala Ser Pro Glu Tyr Val Asn Leu Pro Ile Asn Gly Asn Gly 
        195                 200                 205             


Lys Gln 
    210 


<210>  3
<211>  986
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  GSTP1

<400>  3
tgggaaagag ggaaaggctt ccccggccag ctgcgcggcg actccgggga ctccagggcg       60

cccctctgcg gccgacgccc ggggtgcagc ggccgccggg gctggggccg gcgggagtcc      120

gcgggaccct ccagaagagc ggccggcgcc gtgactcagc actggggcgg agcggggcgg      180

gaccaccctt ataaggctcg gaggccgcga ggccttcgct ggagtttcgc cgccgcagtc      240

ttcgccacca tgccgcccta caccgtggtc tatttcccag ttcgaggccg ctgcgcggcc      300

ctgcgcatgc tgctggcaga tcagggccag agctggaagg aggaggtggt gaccgtggag      360

acgtggcagg agggctcact caaagcctcc tgcctatacg ggcagctccc caagttccag      420

gacggagacc tcaccctgta ccagtccaat accatcctgc gtcacctggg ccgcaccctt      480

gggctctatg ggaaggacca gcaggaggca gccctggtgg acatggtgaa tgacggcgtg      540

gaggacctcc gctgcaaata catctccctc atctacacca actatgaggc gggcaaggat      600

gactatgtga aggcactgcc cgggcaactg aagccttttg agaccctgct gtcccagaac      660

cagggaggca agaccttcat tgtgggagac cagatctcct tcgctgacta caacctgctg      720

gacttgctgc tgatccatga ggtcctagcc cctggctgcc tggatgcgtt ccccctgctc      780

tcagcatatg tggggcgcct cagtgcccgg cccaagctca aggccttcct ggcctcccct      840

gagtacgtga acctccccat caatggcaac gggaaacagt gagggttggg gggactctga      900

gcgggaggca gagtttgcct tcctttctcc aggaccaata aaatttctaa gagagctaaa      960

aaaaaaaaaa aaaaaaaaaa aaaaaa                                           986


<210>  4
<211>  708
<212>  DNA
<213>  Homo sapiens


<220>
<221>  allele
<222>  (313)..(313)
<223>  rs1695; r at position 313 may be either a or g

<400>  4
atgccgccct acaccgtggt ctatttccca gttcgaggcc gctgcgcggc cctgcgcatg       60

ctgctggcag atcagggcca gagctggaag gaggaggtgg tgaccgtgga gacgtggcag      120

gagggctcac tcaaagcctc ctgcctatac gggcagctcc ccaagttcca ggacggagac      180

ctcaccctgt accagtccaa taccatcctg cgtcacctgg gccgcaccct tgggctctat      240

gggaaggacc agcaggaggc agccctggtg gacatggtga atgacggcgt ggaggacctc      300

cgctgcaaat acrtctccct catctacacc aactatgagg cgggcaagga tgactatgtg      360

aaggcactgc ccgggcaact gaagcctttt gagaccctgc tgtcccagaa ccagggaggc      420

aagaccttca ttgtgggaga ccagatctcc ttcgctgact acaacctgct ggacttgctg      480

ctgatccatg aggtcctagc ccctggctgc ctggatgcgt tccccctgct ctcagcatat      540

gtggggcgcc tcagcgcccg gcccaagctc aaggccttcc tggcctcccc tgagtacgtg      600

aacctcccca tcaatggcaa cgggaaacag tgagggttgg ggggactctg agcgggaggc      660

agagtttgcc ttcctttctc caggaccaat aaaatttcta agagagct                   708


<210>  5
<211>  210
<212>  PRT
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  Variant 313

<220>
<221>  MISC_FEATURE
<222>  (105)..(105)
<223>  Xaa at position 105 may be Ile or Val

<400>  5

Met Pro Pro Tyr Thr Val Val Tyr Phe Pro Val Arg Gly Arg Cys Ala 
1               5                   10                  15      


Ala Leu Arg Met Leu Leu Ala Asp Gln Gly Gln Ser Trp Lys Glu Glu 
            20                  25                  30          


Val Val Thr Val Glu Thr Trp Gln Glu Gly Ser Leu Lys Ala Ser Cys 
        35                  40                  45              


Leu Tyr Gly Gln Leu Pro Lys Phe Gln Asp Gly Asp Leu Thr Leu Tyr 
    50                  55                  60                  


Gln Ser Asn Thr Ile Leu Arg His Leu Gly Arg Thr Leu Gly Leu Tyr 
65                  70                  75                  80  


Gly Lys Asp Gln Gln Glu Ala Ala Leu Val Asp Met Val Asn Asp Gly 
                85                  90                  95      


Val Glu Asp Leu Arg Cys Lys Tyr Xaa Ser Leu Ile Tyr Thr Asn Tyr 
            100                 105                 110         


Glu Ala Gly Lys Asp Asp Tyr Val Lys Ala Leu Pro Gly Gln Leu Lys 
        115                 120                 125             


Pro Phe Glu Thr Leu Leu Ser Gln Asn Gln Gly Gly Lys Thr Phe Ile 
    130                 135                 140                 


Val Gly Asp Gln Ile Ser Phe Ala Asp Tyr Asn Leu Leu Asp Leu Leu 
145                 150                 155                 160 


Leu Ile His Glu Val Leu Ala Pro Gly Cys Leu Asp Ala Phe Pro Leu 
                165                 170                 175     


Leu Ser Ala Tyr Val Gly Arg Leu Ser Ala Arg Pro Lys Leu Lys Ala 
            180                 185                 190         


Phe Leu Ala Ser Pro Glu Tyr Val Asn Leu Pro Ile Asn Gly Asn Gly 
        195                 200                 205             


Lys Gln 
    210 


<210>  6
<211>  708
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  allele 341

<220>
<221>  misc_feature
<222>  (341)..(341)
<223>  rs1138272; s at position 341 may be either c or t

<400>  6
atgccgccct acaccgtggt ctatttccca gttcgaggcc gctgcgcggc cctgcgcatg       60

ctgctggcag atcagggcca gagctggaag gaggaggtgg tgaccgtgga gacgtggcag      120

gagggctcac tcaaagcctc ctgcctatac gggcagctcc ccaagttcca ggacggagac      180

ctcaccctgt accagtccaa taccatcctg cgtcacctgg gccgcaccct tgggctctat      240

gggaaggacc agcaggaggc agccctggtg gacatggtga atgacggcgt ggaggacctc      300

cgctgcaaat acatctccct catctacacc aactatgagg sgggcaagga tgactatgtg      360

aaggcactgc ccgggcaact gaagcctttt gagaccctgc tgtcccagaa ccagggaggc      420

aagaccttca ttgtgggaga ccagatctcc ttcgctgact acaacctgct ggacttgctg      480

ctgatccatg aggtcctagc ccctggctgc ctggatgcgt tccccctgct ctcagcatat      540

gtggggcgcc tcagcgcccg gcccaagctc aaggccttcc tggcctcccc tgagtacgtg      600

aacctcccca tcaatggcaa cgggaaacag tgagggttgg ggggactctg agcgggaggc      660

agagtttgcc ttcctttctc caggaccaat aaaatttcta agagagct                   708


<210>  7
<211>  210
<212>  PRT
<213>  Homo sapiens


<220>
<221>  MISC_FEATURE
<223>  Variant 341

<220>
<221>  MISC_FEATURE
<222>  (114)..(114)
<223>  GSTP1 ALA114VAL; Xaa at position 114 may be Ala or Val

<400>  7

Met Pro Pro Tyr Thr Val Val Tyr Phe Pro Val Arg Gly Arg Cys Ala 
1               5                   10                  15      


Ala Leu Arg Met Leu Leu Ala Asp Gln Gly Gln Ser Trp Lys Glu Glu 
            20                  25                  30          


Val Val Thr Val Glu Thr Trp Gln Glu Gly Ser Leu Lys Ala Ser Cys 
        35                  40                  45              


Leu Tyr Gly Gln Leu Pro Lys Phe Gln Asp Gly Asp Leu Thr Leu Tyr 
    50                  55                  60                  


Gln Ser Asn Thr Ile Leu Arg His Leu Gly Arg Thr Leu Gly Leu Tyr 
65                  70                  75                  80  


Gly Lys Asp Gln Gln Glu Ala Ala Leu Val Asp Met Val Asn Asp Gly 
                85                  90                  95      


Val Glu Asp Leu Arg Cys Lys Tyr Ile Ser Leu Ile Tyr Thr Asn Tyr 
            100                 105                 110         


Glu Xaa Gly Lys Asp Asp Tyr Val Lys Ala Leu Pro Gly Gln Leu Lys 
        115                 120                 125             


Pro Phe Glu Thr Leu Leu Ser Gln Asn Gln Gly Gly Lys Thr Phe Ile 
    130                 135                 140                 


Val Gly Asp Gln Ile Ser Phe Ala Asp Tyr Asn Leu Leu Asp Leu Leu 
145                 150                 155                 160 


Leu Ile His Glu Val Leu Ala Pro Gly Cys Leu Asp Ala Phe Pro Leu 
                165                 170                 175     


Leu Ser Ala Tyr Val Gly Arg Leu Ser Ala Arg Pro Lys Leu Lys Ala 
            180                 185                 190         


Phe Leu Ala Ser Pro Glu Tyr Val Asn Leu Pro Ile Asn Gly Asn Gly 
        195                 200                 205             


Lys Gln 
    210 


<210>  8
<211>  601
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  allele IL-6 -174

<220>
<221>  misc_feature
<222>  (301)..(301)
<223>  rs1800795; s at position 301 may be either c or g

<400>  8
actcagttca gaacatcttt ggtttttaca aatacaaatt aactggaacg ctaaattcta       60

gcctgttaat ctggtcactg aaaaaaaatt tttttttttt caaaaaacat agctttagct      120

tatttttttt ctctttgtaa aacttcgtgc atgacttcag ctttactctt tgtcaagaca      180

tgccaaagtg ctgagtcact aataaaagaa aaaaagaaag taaaggaaga gtggttctgc      240

ttcttagcgc tagcctcaat gacgacctaa gctgcacttt tccccctagt tgtgtcttgc      300

satgctaaag gacgtcacat tgcacaatct taataaggtt tccaatcagc cccacccgct      360

ctggccccac cctcaccctc caacaaagat ttatcaaatg tgggattttc ccatgagtct      420

caatattaga gtctcaaccc ccaataaata taggactgga gatgtctgag gctcattctg      480

ccctcgagcc caccgggaac gaaagagaag ctctatctcc cctccaggag cccagctatg      540

aactccttct ccacaagtaa gtgcaggaaa tccttagccc tggaactgcc agcggcggtc      600

g                                                                      601


<210>  9
<211>  52
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  allele rs1800795

<220>
<221>  misc_feature
<222>  (27)..(27)
<223>  rs1800795; r at position 27 may be either c or g

<400>  9
cacttttccc cctagttgtg tcttgcratg ctaaaggacg tcacattgca ca               52


<210>  10
<211>  1201
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  IL-6

<400>  10
aatattagag tctcaacccc caataaatat aggactggag atgtctgagg ctcattctgc       60

cctcgagccc accgggaacg aaagagaagc tctatctccc ctccaggagc ccagctatga      120

actccttctc cacaagcgcc ttcggtccag ttgccttctc cctggggctg ctcctggtgt      180

tgcctgctgc cttccctgcc ccagtacccc caggagaaga ttccaaagat gtagccgccc      240

cacacagaca gccactcacc tcttcagaac gaattgacaa acaaattcgg tacatcctcg      300

acggcatctc agccctgaga aaggagacat gtaacaagag taacatgtgt gaaagcagca      360

aagaggcact ggcagaaaac aacctgaacc ttccaaagat ggctgaaaaa gatggatgct      420

tccaatctgg attcaatgag gagacttgcc tggtgaaaat catcactggt cttttggagt      480

ttgaggtata cctagagtac ctccagaaca gatttgagag tagtgaggaa caagccagag      540

ctgtgcagat gagtacaaaa gtcctgatcc agttcctgca gaaaaaggca aagaatctag      600

atgcaataac cacccctgac ccaaccacaa atgccagcct gctgacgaag ctgcaggcac      660

agaaccagtg gctgcaggac atgacaactc atctcattct gcgcagcttt aaggagttcc      720

tgcagtccag cctgagggct cttcggcaaa tgtagcatgg gcacctcaga ttgttgttgt      780

taatgggcat tccttcttct ggtcagaaac ctgtccactg ggcacagaac ttatgttgtt      840

ctctatggag aactaaaagt atgagcgtta ggacactatt ttaattattt ttaatttatt      900

aatatttaaa tatgtgaagc tgagttaatt tatgtaagtc atatttatat ttttaagaag      960

taccacttga aacattttat gtattagttt tgaaataata atggaaagtg gctatgcagt     1020

ttgaatatcc tttgtttcag agccagatca tttcttggaa agtgtaggct tacctcaaat     1080

aaatggctaa cttatacata tttttaaaga aatatttata ttgtatttat ataatgtata     1140

aatggttttt ataccaataa atggcatttt aaaaaattca gcaaaaaaaa aaaaaaaaaa     1200

a                                                                     1201


<210>  11
<211>  212
<212>  PRT
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  IL-6

<400>  11

Met Asn Ser Phe Ser Thr Ser Ala Phe Gly Pro Val Ala Phe Ser Leu 
1               5                   10                  15      


Gly Leu Leu Leu Val Leu Pro Ala Ala Phe Pro Ala Pro Val Pro Pro 
            20                  25                  30          


Gly Glu Asp Ser Lys Asp Val Ala Ala Pro His Arg Gln Pro Leu Thr 
        35                  40                  45              


Ser Ser Glu Arg Ile Asp Lys Gln Ile Arg Tyr Ile Leu Asp Gly Ile 
    50                  55                  60                  


Ser Ala Leu Arg Lys Glu Thr Cys Asn Lys Ser Asn Met Cys Glu Ser 
65                  70                  75                  80  


Ser Lys Glu Ala Leu Ala Glu Asn Asn Leu Asn Leu Pro Lys Met Ala 
                85                  90                  95      


Glu Lys Asp Gly Cys Phe Gln Ser Gly Phe Asn Glu Glu Thr Cys Leu 
            100                 105                 110         


Val Lys Ile Ile Thr Gly Leu Leu Glu Phe Glu Val Tyr Leu Glu Tyr 
        115                 120                 125             


Leu Gln Asn Arg Phe Glu Ser Ser Glu Glu Gln Ala Arg Ala Val Gln 
    130                 135                 140                 


Met Ser Thr Lys Val Leu Ile Gln Phe Leu Gln Lys Lys Ala Lys Asn 
145                 150                 155                 160 


Leu Asp Ala Ile Thr Thr Pro Asp Pro Thr Thr Asn Ala Ser Leu Leu 
                165                 170                 175     


Thr Lys Leu Gln Ala Gln Asn Gln Trp Leu Gln Asp Met Thr Thr His 
            180                 185                 190         


Leu Ile Leu Arg Ser Phe Lys Glu Phe Leu Gln Ser Ser Leu Arg Ala 
        195                 200                 205             


Leu Arg Gln Met 
    210         


