                         SEQUENCE LISTING

<110>  Gen-Probe Incorporated
       Getman, Damon K
 
<120>  COMPOSITIONS AND METHODS TO DETECT ATOPOBIUM VAGINAE NUCLEIC ACID

<130>  GP232-PCT

<140>  TBA
<141>  2011-02-07

<150>  61/305,319
<151>  2010-02-17

<160>  57    

<170>  PatentIn version 3.5

<210>  1
<211>  1437
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Atopobium Vaginae.  GenBank No. AF 325325.1 gi:  12240234 (Jan. 
       16, 2001)

<400>  1
gatgaacgct ggcggcgcgc ctaacacatg caagtcgaac ggttaaagca tcttcggatg       60

tgtataaagt ggcgaacggc tgagtaacac gtgggcaacc tgccctttgc actgggatag      120

cctcgggaaa ccgaggttaa taccggatac tccatatttg tcgcatggcg aatatgggaa      180

agctccggcg gcaaaggatg ggcccgcggc ctgttagcta gttggtgggg tagtggccta      240

ccaaggcaat gatgggtagc cgggttgaga gaccgaccgg ccagattggg actgagacac      300

ggcccagact cctacgggag gcagcagtgg ggaatcttgc acaatgggcg aaagcctgat      360

gcagcgacgc cgcgtgcggg atgaaggcct tcgggttgta aaccgctttc agcagggacg      420

aggccgcaag gtgacggtac ctgcagaaga agccccggct aactacgtgc cagcagccgc      480

ggtaatacgt agggggcaag cgttatccgg attcattggg cgtaaagcgc gcgtaggcgg      540

tctgttaggt caggagttaa atctgggggc tcaaccccta tccgctcctg ataccggcag      600

gcttgagtct ggtaggggaa gatggaattc caagtgtagc ggtgaaatgc gcagatattt      660

ggaagaacac cggtggcgaa ggcggtcttc tgggccatga ctgacgctga ggcgcgaaag      720

ctaggggagc gaacaggatt agataccctg gtagtcctag ctgtaaacga tggacactag      780

gtgtggggag attatacttt ccgtgccgca gctaacgcat taagtgtccc gcctggggag      840

tacggtcgca agactaaaac tcaaaggaat tgacgggggc ccgcacaagc agcggagcat      900

gtggcttaat tcgaagcaac gcgaagaacc ttaccagggc ttgacattta ggtgaagcag      960

tggaaacact gtggccgaaa ggagcctaaa caggtggtgc atggctgtcg tcagctcgtg     1020

tcgtgagatg ttgggttaag tcccgcaacg agcgcaaccc ttgtcgcatg ttgccagcgg     1080

ttcggccggg cacccatgcg agaccgccgg cgttaagccg gaggaaggtg gggacgacgt     1140

caagtcatca tgccccttat gtcctgggct gcacacgtgc tacaatggcc ggcacagagg     1200

gctgctactg cgcgagcaga agcgaatccc taaagccggt cccagttcgg attggaggct     1260

gcaactcgcc tccatgaagt cggagttgct agtaatcgcg gatcagcacg ccgcggtgaa     1320

tgcgttcccg ggccttgtac acaccgcccg tcacaccacc cgagtcgtct gcacccgaag     1380

tcgtcggcct aacccgcaag ggagggaggc gccgaaggtg tggagggtaa ggggggt        1437


<210>  2
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  2
ctttcagcag ggacgagg                                                     18


<210>  3
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  3
aatttaatac gactcactat agggagatat caggagcgga taggggttga                  50


<210>  4
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  4
ggucaggagu uaaaucugg                                                    19


<210>  5
<211>  55
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (23)..(55)
<223>  dT3/dA30 tail

<400>  5
ctactgctgc ctcccgtagg agtttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa            55


<210>  6
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (25)..(57)
<223>  dT3/dA30 tail

<400>  6
ggactaccag ggtatctaat cctgtttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  7
<211>  59
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (27)..(59)
<223>  dT3/dA30 tail

<400>  7
cgacacgagc tgacgacagc catgcattta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa        59


<210>  8
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (21)..(53)
<223>  dT3/dA30 tail

<400>  8
gacgtcatcc ccaccttcct tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa              53


<210>  9
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  9
ggattagata ccctggtagt cc                                                22


<210>  10
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  10
aatttaatac gactcactat agggagaccc gtcaattcct ttgag                       45


<210>  11
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  11
actgagacac ggcccaaact cctacgggag g                                      31


<210>  12
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  12
actcctacgg gaggcagcag tag                                               23


<210>  13
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  13
aatttaatac gactcactat agggagatta ccgcggctgc tggcacg                     47


<210>  14
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  14
tcagcaggga cgaggccgca aggtga                                            26


<210>  15
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  15
gttaggtcag gagttaaatc tgg                                               23


<210>  16
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  16
cggtctgtta ggtcaggagt t                                                 21


<210>  17
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  17
ggtcaggagt taaatctgg                                                    19


<210>  18
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  18
ccgaggttaa taccggatac tc                                                22


<210>  19
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  19
aagtggcgaa cggctgagta a                                                 21


<210>  20
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  20
aatttaatac gactcactat agggagaatc attgccttgg taggcc                      46


<210>  21
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  21
ctactgctgc ctcccgtagg ag                                                22


<210>  22
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  22
ggactaccag ggtatctaat cctg                                              24


<210>  23
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  23
cgacacgagc tgacgacagc catgca                                            26


<210>  24
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  24
gacgtcatcc ccaccttcct                                                   20


<210>  25
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer:  T7 Promoter Sequence

<400>  25
aatttaatac gactcactat agggaga                                           27


<210>  26
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  26
ctttcagcag ggacgaggct caacccctat ccgctcctga ta                          42


<210>  27
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  27
tatcaggagc ggataggggt tga                                               23


<210>  28
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  28
cccgtcaatt cctttgag                                                     18


<210>  29
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  29
ttaccgcggc tgctggcacg                                                   20


<210>  30
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  30
atcattgcct tggtaggcc                                                    19


<210>  31
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  31
gtggcgaacg gctgagtaac ac                                                22


<210>  32
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  32
aacggctgag taacacgtg                                                    19


<210>  33
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  33
ggcaacctgc cctttgcact gggata                                            26


<210>  34
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  34
tgccctttgc actgggatag cctcggga                                          28


<210>  35
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  35
aatttaatac gactcactat agggagagga gtatccggta ttaacctcgg                  50


<210>  36
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  36
ggagtatccg gtattaacct cgg                                               23


<210>  37
<211>  48
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  promoter
<222>  (1)..(27)

<400>  37
aatttaatac gactcactat agggagagga gtatccggta ttaacctc                    48


<210>  38
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  38
ggagtatccg gtattaacct c                                                 21


<210>  39
<211>  52
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (20)..(52)
<223>  dT3/dA30 tail

<400>  39
ccaccaacta gctaacaggt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa               52


<210>  40
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  40
ccaccaacta gctaacagg                                                    19


<210>  41
<211>  59
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer


<220>
<221>  misc_feature
<222>  (27)..(59)
<223>  dT3/dA30 tail

<400>  41
aacccggcta cccatcattg ccttggttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa        59


<210>  42
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  42
aacccggcta cccatcattg ccttgg                                            26


<210>  43
<211>  188
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Exemplary Amplicon's Target Specific Sequence

<400>  43
ctttcagcag ggacgaggcc gcaaggtgac ggtacctgca gaagaagccc cggctaacta       60

cgtgccagca gccgcggtaa tacgtagggg gcaagcgtta tccggattca ttgggcgtaa      120

agcgcgcgta ggcggtctgt taggtcagga gttaaatctg ggggctcaac ccctatccgc      180

tcctgata                                                               188


<210>  44
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer or Residues 538 to 566 of AF 325325.1 gi:  
       12240234 (Jan. 16, 2001)

<400>  44
cggtctgtta ggtcaggagt taaatctgg                                         29


<210>  45
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer or Residues 544 to 566 of AF 325325.1 gi:  
       12240234 (Jan. 16, 2001)

<400>  45
gttaggtcag gagttaaatc tgg                                               23


<210>  46
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer or Residues 548 to 566 of AF 325325.1 gi:  
       12240234 (Jan. 16, 2001)

<400>  46
ggtcaggagt taaatctgg                                                    19


<210>  47
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer or Residues 538 to 558 of AF 325325.1 gi:  
       12240234 (Jan. 16, 2001)

<400>  47
cggtctgtta ggtcaggagt t                                                 21


<210>  48
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer or Residues 548 to 558 of AF 325325.1 gi:  
       12240234 (Jan. 16, 2001)

<400>  48
ggtcaggagt t                                                            11


<210>  49
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Oligomer

<400>  49
ccugutttuu ctcctgucc                                                    19


<210>  50
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer or residues 406 to 434 of GenBank Accession 
       Number AF325325.1, gi:12240234 (Jan 16, 2001)

<400>  50
ctttcagcag ggacgaggcc gcaaggtga                                         29


<210>  51
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  synthetic oligomer

<400>  51
tcaccttgcg gcctcgtccc tgctga                                            26


<210>  52
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  52
ccagatttaa ctcctgacct aac                                               23


<210>  53
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  53
aactcctgac ctaacagacc g                                                 21


<210>  54
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  54
ccagatttaa ctcctgacc                                                    19


<210>  55
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  55
gagtatccgg tattaacctc gg                                                22


<210>  56
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  56
tatcccagtg caaagggcag gttgcc                                            26


<210>  57
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligomer

<400>  57
tcccgaggct atcccagtgc aaagggca                                          28


