                         SEQUENCE LISTING

<110>  PRESIDENT AND FELLOWS OF HARVARD COLLEGE
       Liu, David R
       Gorin, David
       Kamlet, Adam
       McGregor, Lynn
       Dumelin, Christoph E
 
<120>  REACTIVITY-DEPENDENT AND INTERACTION-DEPENDENT PCR

<130>  H0824.70029WO00

<140>  PCT/US2010/002732
<141>  2010-10-13

<150>  61/257,983
<151>  2009-11-04

<160>  96    

<170>  PatentIn version 3.5

<210>  1
<211>  5
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  synthetic polypeptide

<400>  1

Ala Pro Gly Phe Ala 
1               5   


<210>  2
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  2
gcagtaccaa ccctgtacac catctcaagt tctatgtctg actacagagt gggatgcata       60

gaac                                                                    64


<210>  3
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  3
tctgactaca gagtgggatg catagaac                                          28


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  4
gctgactaca gagtgggatg                                                   20


<210>  5
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  5
gcagtaccaa ccctgtacac                                                   20


<210>  6
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  6
gcagtaccaa ccctgtacac catctcaagt tctatg                                 36


<210>  7
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  7
gctgactaca gagtgggatg catagaactt                                        30


<210>  8
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  8
gctgactaca gagtgggatg catagaac                                          28


<210>  9
<211>  66
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  9
gcagtaccaa ccctgtacac catctcaagt tctatggctg actacagagt gggatgcata       60

gaactt                                                                  66


<210>  10
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  10
gcagtaccaa ccctgtacac catctcaagt tctatggctg actacagagt gggatgcata       60

gaac                                                                    64


<210>  11
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  11
gcagtaccaa ccctgtacac catctcaagt tctatggctg actacagagt gggatgcata       60

ga                                                                      62


<210>  12
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  12
gcagtaccaa ccctgtacac                                                   20


<210>  13
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  13
cctgactaca gagtgggatg                                                   20


<210>  14
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  14
gcagtaccaa ccctgtacac catctcaagt tctatg                                 36


<210>  15
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  15
cctgactaca gagtgggatg catagaac                                          28


<210>  16
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  16
cctgactaca gagtgggatg catagaatt                                         29


<210>  17
<211>  66
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  17
gcagtaccaa ccctgtacac catctcaagt tctatgcctg actacagagt gggatgcata       60

gaactt                                                                  66


<210>  18
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  18
gcagtaccaa ccctgtacac catctcaagt tctatgcctg actacagagt gggatgcata       60

gaac                                                                    64


<210>  19
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  19
gcagtaccaa ccctgtacac catctcaagt tctatgcctg actacagagt gggatgcata       60

ga                                                                      62


<210>  20
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  20
gagctcgttg atatccgcag acatgagccc cactacacac acc                         43


<210>  21
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  21
acctaaagct agcagctggc cgtgatcagc ttggtgtgtg                             40


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  22
gagctcgttg atatccgcag                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  23
acctaaagct agcagctggc                                                   20


<210>  24
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  24
gcagtaccaa ccctgtacac catctcaagt tctatg                                 36


<210>  25
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  25
ctgagctcgt tgatatccgc agcatagaac                                        30


<210>  26
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  26
gcagtaccaa ccctgtacac                                                   20


<210>  27
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  27
ctgagctcgt tgatatccgc ag                                                22


<210>  28
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  28
gcagtaccaa ccctgtacac catctcaagt tctatc                                 36


<210>  29
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  29
cctgactaca gagtgggatg catagaac                                          28


<210>  30
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  30
cctgactaca gagtgggatg ttgaccgt                                          28


<210>  31
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  31
gctgactaca gagtgggatg                                                   20


<210>  32
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  32
ctgagctcgt tgatatccgc ag                                                22


<210>  33
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  33
gctgactaca gagtgggatg aatcttcatc tcaagttcta tg                          42


<210>  34
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  34
ctgagctcgt tgatatccgc agcatagaac                                        30


<210>  35
<211>  72
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  35
gctgactaca gagtgggatg aagcttcatc tcaagttcta tgctgagctc gttgatatcc       60

gcagcataga ac                                                           72


<210>  36
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  36
gctgactaca gagtgggatg caagtgcatc tcaagttcta tg                          42


<210>  37
<211>  72
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  37
gctgactaca gagtgggatg cagctgcatc tcaagttcta tgctgagctc gttgatatcc       60

gcagcataga ac                                                           72


<210>  38
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  38
gagctcgttg atatccgcag agcgttatgg tccgacacac acc                         43


<210>  39
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  39
acctaaagct agcagctggc gaggttccag atggtgtgtg                             40


<210>  40
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  40
acctaaagct agcagctggc cgcacacttt ctggtgtgtg                             40


<210>  41
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  41
gagctcgttg atatccgcag                                                   20


<210>  42
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  42
acctaaagct agcagctggc                                                   20


<210>  43
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  43
gagctcgttg atatccgcag                                                   20


<210>  44
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  44
acctaaagct agcagctggc                                                   20


<210>  45
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  45
gcagtaccaa ccctgtacac                                                   20


<210>  46
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  46
ctgagctcgt tgatatccgc ag                                                22


<210>  47
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  47
gcagtaccaa ccctgtacac catctcaagt tctatg                                 36


<210>  48
<211>  5
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  synthetic polypeptide

<400>  48

Ala Pro Gly Phe Ala 
1               5   


<210>  49
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  49
ctgagctcgt tgatatccgc agcatagaac                                        30


<210>  50
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  50
gcagtaccaa ccctgtacac catctcaagt tctatg                                 36


<210>  51
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  51
cggcgatcgt gaaggaggct agactgagtg ag                                     32


<210>  52
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  52
cggcgatcgt gaaggaggct agactgagtg ag                                     32


<210>  53
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  53
tggatcgtga tgactgtccc gacaagcata cgtatctcac tcagt                       45


<210>  54
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  54
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  55
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  55
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  56
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  56
tggatcgtga tgactgtccc gacaagcata cgtattacta g                           41


<210>  57
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  57
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  58
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  58
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  59
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  59
tggatcgtga tgactgtccc gacaagcata cgtattacta g                           41


<210>  60
<211>  68
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  60
accatctgtg taaggggtaa ggggtggggg tgggtacgtc tcggcgatcg tgaaggagac       60

tgagtgag                                                                68


<210>  61
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  61
ggattctgta tgactgtccc acgtatctca ct                                     32


<210>  62
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  62
ggattctgta tgactgtccc acgtatctca ct                                     32


<210>  63
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  63
tggatcgtga tgactgtccc gacaagaatt cgtatctcac t                           41


<210>  64
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  64
tggatcgtga tgactgtccc gacaagctta cgtatctcac t                           41


<210>  65
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  65
accatctgtg taaggggtaa ggggtggggg tgggtacgtc tcggcgatcg tgaaggagta       60

agctactgag tgag                                                         74


<210>  66
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  66
accatctgtg taaggggtaa ggggtggggg tgggtacgtc tcggcgatcg tgaaggagat       60

gcatactgag tgag                                                         74


<210>  67
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  67
attgatcact tgatttctgc ccattgatta aagtcgcaag tcggcgatcg tgaaggagta       60

agctactgag tgag                                                         74


<210>  68
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  68
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  69
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  69
tggatcgtga tgactgtccc gacaaatgca tgtatctcac t                           41


<210>  70
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  70
tggatcgtga tgactgtccc gacaaatgca tgtatctcac t                           41


<210>  71
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  71
cggcgatcgt gaaggaggct cgagtgagtg ag                                     32


<210>  72
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  72
cggcgatcgt gaaggaggct agcctgagtg ag                                     32


<210>  73
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (20)..(23)
<223>  n is a, c, g, or t

<400>  73
cggcgatcgt gaaggaggan nnnttgagtg ag                                     32


<210>  74
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  74
tggatcgtga tgactgtccc gacaagctta cgtatctcac t                           41


<210>  75
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  75
tggatcgtga tgactgtccc gacaaccatg ggtatctcac t                           41


<210>  76
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  76
tggatcgtga tgactgtccc gacaaccatg ggtatctcac t                           41


<210>  77
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  77
tggatcgtga tgactgtccc gacaaggatc cgtatctcac t                           41


<210>  78
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  78
tggatcgtga tgactgtccc gacaaggatc cgtatctcac t                           41


<210>  79
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  79
tggatcgtga tgactgtccc gacaaagtac tgtatctcac t                           41


<210>  80
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  80
tggatcgtga tgactgtccc gacaaagtac tgtatctcac t                           41


<210>  81
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (27)..(30)
<223>  n is a, c, g, or t

<400>  81
tggatcgtga tgactgtccc gacaatnnnn agtatctcac t                           41


<210>  82
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  82
tggatcgtga tgactgtccc                                                   20


<210>  83
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  83
cggcgatcgt gaaggag                                                      17


<210>  84
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  84
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatcttt       60

ctcgcggcga tcgtgaagga g                                                 81


<210>  85
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  85
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatcttc       60

tacccggcga tcgtgaagga g                                                 81


<210>  86
<211>  54
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  86
caagcagaag acggcatacg agctcttccg atcttggatc gtgatgactg tccc             54


<210>  87
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  87
cggggatcgt gaaggaggct agactg                                            26


<210>  88
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  88
cggggatcgt gaaggaggct agactgag                                          28


<210>  89
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  89
cggggatcgt gaaggaggct agactgagtg                                        30


<210>  90
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  90
cggggatcgt gaaggaggct agactgagtg ag                                     32


<210>  91
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  91
tgagtcgtga tgactgtccc gacaagctta cgtatctcac tcagt                       45


<210>  92
<211>  70
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  92
tgagtcgtga tgactgtccc gacaagctta cgtatctcac tcagcgggga tcgtgaagga       60

ggctagactg                                                              70


<210>  93
<211>  72
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  93
tgagtcgtga tgactgtccc gacaagctta cgtatctcac tcagcgggga tcgtgaagga       60

ggctagactg ag                                                           72


<210>  94
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  94
tggatcgtga tgactgtccc gacaagcata cgtatctcac t                           41


<210>  95
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  95
cggcgatcgt gaaggaggct agactgagtg ag                                     32


<210>  96
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic polynucleotide

<400>  96
gggacagtca tcacga                                                       16


