                         SEQUENCE LISTING

<110>  Case Western Reserve University
 
<120>  METHOD FOR DETECTING SINGLE NUCLEOTIDE POLYMORPHISMS

<130>  200512.000106

<150>  US 12/569,648
<151>  2009-09-29

<160>  138   

<170>  PatentIn version 3.4

<210>  1
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  1
tatactatca actcaacaac atatttagga ataccacacc ctgcagggtt aaaaaagaat     60


<210>  2
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  2
ctacaaacaa acaaacatta tcaattagga ataccacacc ctgcagggtt aaaaaagaac     60


<210>  3
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  3
atactacatc ataatcaaac atcattagga ataccacacc ctgcagggtt aaaaaagaaa     60


<210>  4
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  4
caattcaaat cacaataatc aatcttagga ataccacacc ctgcagggtt aaaaaagaag     60


<210>  5
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(42)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (48)..(48)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyuracil

<400>  5
tatactatca actcaacaac atatttagga ataccacanc cngcaggntt aaaanagaat     60


<210>  6
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(42)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (48)..(48)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyuracil

<400>  6
ctacaaacaa acaaacatta tcaattagga ataccacanc cngcaggntt aaaanagaac     60


<210>  7
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(42)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (48)..(48)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyuracil

<400>  7
atactacatc ataatcaaac atcattagga ataccacanc cngcaggntt aaaanagaaa     60


<210>  8
<211>  60
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(42)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (48)..(48)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyuracil

<400>  8
caattcaaat cacaataatc aatcttagga ataccacanc cngcaggntt aaaanagaag     60


<210>  9
<211>  76
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (35)..(43)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (49)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (51)..(70)
<223>  n is deoxyuracil

<400>  9
aatcctttta cattcattac ttacgacaaa aatcntagag ccntttagnn nanaaaancc     60

aganatagtn atctgt                                                     76


<210>  10
<211>  76
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (35)..(43)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (49)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (51)..(70)
<223>  n is deoxyuracil

<400>  10
aaacaaactt cacatctcaa taatgacaaa aatcntagag ccntttagnn nanaaaancc     60

aganatagtn atctgc                                                     76


<210>  11
<211>  76
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (35)..(43)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (49)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (51)..(70)
<223>  n is deoxyuracil

<400>  11
aatcaatctt cattcaaatc atcagacaaa aatcntagag ccntttagnn nanaaaancc     60

aganatagtn atctat                                                     76


<210>  12
<211>  76
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (35)..(43)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (49)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (51)..(70)
<223>  n is deoxyuracil

<400>  12
attattcact tcaaactaat ctacgacaaa aatcntagag ccntttagnn nanaaaancc     60

aganatagtn atctac                                                     76


<210>  13
<211>  65
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  n is deoxyinosine

<400>  13
tacactttat caaatcttac aatcgggcan ctaaaggaag ctctattaga tacaggagca     60

gataa                                                                 65


<210>  14
<211>  65
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  n is deoxyinosine

<400>  14
ctttatcaat acatactaca atcagggcan ctaaaggaag ctctattaga tacaggagca     60

gatga                                                                 65


<210>  15
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(28)
<223>  n is deoxyinosine

<400>  15
caattcaaat cacaataatc aatcgaanat ggaaaccaaa aatgataggg ggaattggag     60

gttttat                                                               67


<210>  16
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(28)
<223>  n is deoxyinosine

<400>  16
tcaacaatct tttacaatca aatcgaanat ggaaaccaaa aatgataggg ggaattggag     60

gttttgt                                                               67


<210>  17
<211>  77
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (30)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (57)..(61)
<223>  n is deoxyinosine

<400>  17
taatcttcta tatcaacatc ttacgaaatn tgnggacana aagctatagg tacagtntta     60

ntaggaccta cacctgc                                                    77


<210>  18
<211>  77
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (30)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (57)..(61)
<223>  n is deoxyinosine

<400>  18
aatcctttta cattcattac ttacgaaatn tgnggacana aagctatagg tacagtntta     60

ntaggaccta cacctgt                                                    77


<210>  19
<211>  73
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n is deoxyinosine

<400>  19
tacaaatcat caatcacttt aatcgacata aagctatagg tacagtatta ntaggaccta     60

cacctgtcaa cat                                                        73


<210>  20
<211>  73
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n is deoxyinosine

<400>  20
tacactttct ttctttcttt ctttgacata aagctatagg tacagtatta ntaggaccta     60

cacctgtcaa ctg                                                        73


<210>  21
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (40)..(44)
<223>  n is deoxyinosine

<400>  21
ctactataca tcttactata ctttagctat aggtacagtn ttantaggac ctacacctgt     60

caacataatt ggaagaaa                                                   78


<210>  22
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (40)..(44)
<223>  n is deoxyinosine

<400>  22
atacttcatt cattcatcaa ttcaagctat aggtacagtn ttantaggac ctacacctgt     60

caacataatt ggaagaag                                                   78


<210>  23
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (41)..(59)
<223>  n is deoxyuracil

<400>  23
ctttaatctc aatcaataca aatcggcctg aaaatccata naatactcca gtatttgcna     60

taaagaa                                                               67


<210>  24
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (41)..(59)
<223>  n is deoxyuracil

<400>  24
tacattacca ataatcttca aatcggcctg aaaatccata naatactcca gtatttgcna     60

taaagag                                                               67


<210>  25
<211>  69
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  25
atcatacata catacaaatc tacacagtat ttgccataaa gaaaaaagac agtactaaat     60

ggagaaaag                                                             69


<210>  26
<211>  69
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  26
caattcattt accaatttac caatcagtat ttgccataaa gaaaaaagac agtactaaat     60

ggagaaaat                                                             69


<210>  27
<211>  72
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  27
aatcaatctt cattcaaatc atcaagtatt tgccataaag aaaaaagaca gtactaaatg     60

gagaaaatta ac                                                         72


<210>  28
<211>  72
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  28
caataaacta tacttcttca ctaaagtatt tgccataaag aaaaaagaca gtactaaatg     60

gagaaaatta gt                                                         72


<210>  29
<211>  57
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<400>  29
tcaatcaatt acttactcaa atacggaata ccacatccng cagggttaaa aaagaaa        57


<210>  30
<211>  57
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<400>  30
aatccttttt actcaattca atcaggaata ccacatccng cagggttaaa aaagaac        57


<210>  31
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is deoxyuracil

<400>  31
tcaatcaatt acttactcaa ataccacatc cngcagggtt aaaaaagaaa                50


<210>  32
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is deoxyuracil

<400>  32
aatccttttt actcaattca atcacacatc cngcagggtt aaaaaagaac                50


<210>  33
<211>  65
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  n is deoxyinosine

<400>  33
ctacaaacaa acaaacatta tcaagagaca ccaggnatta gatatcagta caatgtgctt     60

ccaat                                                                 65


<210>  34
<211>  65
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  n is deoxyinosine

<400>  34
cttttcaatt acttcaaatc ttcagagaca ccaggnatta gatatcagta caatgtgctt     60

ccaca                                                                 65


<210>  35
<211>  75
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (64)..(64)
<223>  n is deoxyuracil

<400>  35
ttcacttttc aatcaacttt aatcgacaaa aatcttagag ccttttagaa aacaaaatcc     60

aganatagtt atcta                                                      75


<210>  36
<211>  75
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (64)..(64)
<223>  n is deoxyuracil

<400>  36
tcattcatat acataccaat tcatgacaaa aatcttagag ccttttagaa aacaaaatcc     60

aganatagtt atctg                                                      75


<210>  37
<211>  71
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n is deoxyuracil

<400>  37
cttttcatct tttcatcttt caatagagcc ttttagaaaa caaaatccag anatagttat     60

ctatcaatac a                                                          71


<210>  38
<211>  71
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n is deoxyuracil

<400>  38
ctttctacat tattcacaac attaagagcc ttttagaaaa caaaatccag anatagttat     60

ctatcaatac g                                                          71


<210>  39
<211>  80
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (47)..(47)
<223>  n is deoxyuracil

<400>  39
tacatcaaca attcattcaa tacactttta gaaaacaaaa tccaganata gttatctatc     60

aatacatgga tgatttgtat                                                 80


<210>  40
<211>  80
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (47)..(47)
<223>  n is deoxyuracil

<400>  40
ctttcaatta caatactcat tacactttta gaaaacaaaa tccaganata gttatctatc     60

aatacatgga tgatttgtta                                                 80


<210>  41
<211>  72
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (34)..(61)
<223>  n is deoxyuracil

<400>  41
tcaatcatct ttatacttca caataaatcc aganatagtt atctatcaat acatggatga     60

nttgtatgta gc                                                         72


<210>  42
<211>  72
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (34)..(61)
<223>  n is deoxyuracil

<400>  42
tcatcaatct ttcaatttac ttacaaatcc aganatagtt atctatcaat acatggatga     60

nttgtatgta gg                                                         72


<210>  43
<211>  77
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (65)..(72)
<223>  n is deoxyinosine

<400>  43
tatatacact tctcaataac taaccataga acaaaaatag aggaactgag acaacatctg     60

ttgangtggg gntttac                                                    77


<210>  44
<211>  77
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (65)..(72)
<223>  n is deoxyinosine

<400>  44
ctactaattc attaacatta ctaccataga acaaaaatag aggaactgag acaacatctg     60

ttgangtggg gntttta                                                    77


<210>  45
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  45
ttcaatcatt caaatctcaa ctttggcatt ccctacaatc cccaaagtaa                50


<210>  46
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  46
cttttacaat acttcaatac aatcggcatt ccctacaatc cccaaagtca                50


<210>  47
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence

<400>  47
aatcctttct ttaatctcaa atcaggcatt ccctacaatc cccaaagtcg                50


<210>  48
<211>  68
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyinosine

<400>  48
ctttaatcct ttatcacttt atcaattccc tacaatcccc aaagtcaagg agtantagaa     60

tctatgaa                                                              68


<210>  49
<211>  68
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n is deoxyinosine

<400>  49
tcaaaatctc aaatactcaa atcaattccc tacaatcccc aaagtcaagg agtantagaa     60

tctatgca                                                              68


<210>  50
<211>  51
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (26)..(26)
<223>  n is deoxyinosine

<400>  50
tagtagattt cagagaactt aataanagaa ctcaagactt ctgggaagtt c              51


<210>  51
<211>  47
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<400>  51
tggatgattt gtatgtagga tctgacttag aaataggnca gcataga                   47


<210>  52
<211>  62
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is deoxyinosine

<400>  52
aggagtagta gaatctatga ataaagaatt aaagaaaatt ataggacang taagagatca     60

gg                                                                    62


<210>  53
<211>  36
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (26)..(34)
<223>  n is deoxyuracil

<400>  53
aattggaaga aatctgttga ctcagnttgg ntgnac                               36


<210>  54
<211>  50
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n is deoxyinosine

<400>  54
atctgactta gaaataggnc agcatagaac aaaaatagag gaactgagac                50


<210>  55
<211>  62
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n is deoxyinosine

<400>  55
aaaagacagt actaaatgga gaaaattagt agatttcaga gaacttaata anagaactca     60

ag                                                                    62


<210>  56
<211>  53
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (22)..(22)
<223>  n is deoxyinosine

<400>  56
agatttcaga gaacttaata anagaactca agacttctgg gaagttcaat tag            53


<210>  57
<211>  62
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is deoxyinosine

<400>  57
cggagtagta gaatctatga ataaagaatt aaagaaaatt ataggacang taagagatca     60

gg                                                                    62


<210>  58
<211>  51
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (27)..(28)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  n is deoxyuracil

<400>  58
caaagtaaga cagtatgatc agatacnnnt agaaatntgt ggacataaag c              51


<210>  59
<211>  36
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is deoxyuracil

<400>  59
caacataatt ggaagaaatc tgttgactca gnttgg                               36


<210>  60
<211>  36
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (10)..(31)
<223>  n is deoxyuracil

<400>  60
cacaccagan aaaaaacatc agaaagaacc nccatt                               36


<210>  61
<211>  29
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  61
gggatggaaa ggatcaccag caatattcc                                       29


<210>  62
<211>  62
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is deoxyinosine

<400>  62
tggagtagta gaatctatga ataaagaatt aaagaaaatt ataggacang taagagatca     60

gg                                                                    62


<210>  63
<211>  62
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (28)..(55)
<223>  n is deoxyinosine

<400>  63
taaagaatta aagaaaatta taggacangt aagagatcag gctgaacatc ttaanacagc     60

ag                                                                    62


<210>  64
<211>  53
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  n is deoxyinosine

<400>  64
tacagtatta gaaganatga atttgccagg aanatggaaa ccaaaaatga tag            53


<210>  65
<211>  36
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (26)..(34)
<223>  n is deoxyuracil

<400>  65
tattggaaga aatctgttga ctcagnttgg ntgnac                               36


<210>  66
<211>  34
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (14)..(19)
<223>  n is deoxyuracil

<400>  66
tctgttgact cagnttggnt gcactttaaa tttt                                 34


<210>  67
<211>  44
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is deoxyuracil

<400>  67
tcaatacatg gatganttgt atgtaggatc tgacttagaa atag                      44


<210>  68
<211>  31
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  68
aaatcagtaa cagtactgga tgtgggtgat g                                    31


<210>  69
<211>  49
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  n is deoxyinosine

<400>  69
gtaggatctg acttagaaat aggncagcat agaacaaaaa tagaggaac                 49


<210>  70
<211>  26
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (9)..(15)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is deoxyinosine

<400>  70
aaatcagtna cagtnntnga tgtggg                                          26


<210>  71
<211>  26
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (7)..(16)
<223>  n is deoxyuracil

<400>  71
tcaatanatg gatganttgt atgtag                                          26


<210>  72
<211>  44
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (6)..(30)
<223>  n is deoxyuracil

<400>  72
caatanatgg atganttgta tgtaggatcn gacttagaga tagg                      44


<210>  73
<211>  94
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  73
ccccaaagtc aaggagtart agaatctatg aataaagaat taaagaaaat tataggacar     60

gtaagagatc aggctgaaca tcttaaraca gcag                                 94


<210>  74
<211>  74
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  74
ggagcagatg atacagtatt agaagamatr rrtttrccag gaaratggaa accaaaaatg     60

atagggggaa ttgg                                                       74


<210>  75
<211>  72
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  75
ggaggtttta tcaaagtaag acagtatgat cagrtacyyr tagaaatytg yggacayaaa     60

gctataggta ca                                                         72


<210>  76
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  76
cctacacctg tcaacataat tggaagaaat ctgttgactc agmttggytg yactttaaat     60

ttt                                                                   63


<210>  77
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  77
gggttaaaaa agaaaaaatc agtaacagta ctggatgtgg gtgatgcata yttytcagtt     60

ccc                                                                   63


<210>  78
<211>  56
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  78
ggatggaaag gatcaccagc aatattccaa wgtagcatga caaaaatctt agagcc         56


<210>  79
<211>  76
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  79
gttatctatc aatacatgga tgayttgtat gtaggatctg acttagaaat agrrcagcat     60

agaryaaaaa tagagg                                                     76


<210>  80
<211>  61
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  80
gtggggrttt accacaccag ayaaaaaaca tcagaaagaa ccyccattyc tttggatggg     60

t                                                                     61


<210>  81
<211>  82
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  81
cyataaagaa aaargacagt actaaatgga gaaaattagt agatttyaga gaacttaata     60

araraactca agacttytgg ga                                              82


<210>  82
<211>  71
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  82
tggagaaaat tagtagattt yagagaactt aataararaa ctcaagactt ytgggaagtt     60

caattaggaa t                                                          71


<210>  83
<211>  82
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, t or u

<400>  83
ggargttcaa ttaggaatac cacayccwgc aggrttaaaa magaanaaat cagtracagt     60

rytrgatgtg ggsgatgcat at                                              82


<210>  84
<211>  81
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  84
vhaattaatt gtayaagacc carcaacaat acaagaarar gtatammtat rggaccaggg     60

aragcaktwt wtdcwacars a                                               81


<210>  85
<211>  81
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  85
tammtatrgg accagggara gcaktwtwtd cwacarsavr hataatagga ratataagam     60

aagcayattg taaymttart r                                               81


<210>  86
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  86
ctttatcaat acatactaca atcagaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaaaa                                                   78


<210>  87
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  87
ctttaatctc aatcaataca aatcgaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaaag                                                   78


<210>  88
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  88
aatcctttta cattcattac ttacgaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaaca                                                   78


<210>  89
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  89
tacattacca ataatcttca aatcgaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaacg                                                   78


<210>  90
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  90
caattcaaat cacaataatc aatcgaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaaga                                                   78


<210>  91
<211>  78
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (28)..(32)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n is deoxyinosine

<400>  91
tacactttat caaatcttac aatcgaanga anctgtanna attaattgta caagacccan     60

caacaataca agaaaagg                                                   78


<210>  92
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is a, c, g, t or u

<400>  92
caattcattt accaatttac caatacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga aa                                              82


<210>  93
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  93
ctttctatct ttctactcaa taatacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga ac                                              82


<210>  94
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  94
tcaacaatct tttacaatca aatcacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga ag                                              82


<210>  95
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  95
atactaactc aactaacttt aaacacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga cc                                              82


<210>  96
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  96
aatctcataa tctacataca ctatacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttu tncaacagga cg                                              82


<210>  97
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  97
aatcatactc aactaatcat tcaaacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga ga                                              82


<210>  98
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  98
aatctacact aacaatttca taacacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga gc                                              82


<210>  99
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  99
ctatctttaa actacaaatc taacacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga gg                                              82


<210>  100
<211>  82
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (45)..(46)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n is deoxyinosine

<220>
<221>  misc_feature
<222>  (70)..(70)
<223>  n is deoxyuracil

<220>
<221>  misc_feature
<222>  (72)..(72)
<223>  n is deoxyinosine

<400>  100
tacactttaa acttactaca ctaaacaata caagaaaaag tatanntatn ggaccaggga     60

gagcattttn tncaacagga ca                                              82


<210>  101
<211>  66
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  101
adtahhtatr ggaccaggga garcatttta tvcaacagga gavataatag gagatataag     60

amaagc                                                                66


<210>  102
<211>  66
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  102
cdtahhtatr ggaccaggga garcatttta tvcaacagga gavataatag gagatataag     60

amaagc                                                                66


<210>  103
<211>  66
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  103
gdtahhtatr ggaccaggga garcatttta tvcaacagga gavataatag gagatataag     60

amaagc                                                                66


<210>  104
<211>  66
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  104
tdtahhtatr ggaccaggga garcatttta tvcaacagga gavataatag gagatataag     60

amaagc                                                                66


<210>  105
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  105
adtahhtatr ggaccaggga garcatttta tacaggagav ataataggag atataagama     60

agc                                                                   63


<210>  106
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  106
cdtahhtatr ggaccaggga garcatttta tacaggagav ataataggag atataagama     60

agc                                                                   63


<210>  107
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  107
gdtahhtatr ggaccaggga garcatttta tacaggagav ataataggag atataagama     60

agc                                                                   63


<210>  108
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  108
tdtahhtatr ggaccaggga garcatttta tacaggagav ataataggag atataagama     60

agc                                                                   63


<210>  109
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  109
adtahhtatr ggaccaggga garcatttta tvcaacagav ataataggag atataagama     60

agc                                                                   63


<210>  110
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  110
cdtahhtatr ggaccaggga garcatttta tvcaacagav ataataggag atataagama     60

agc                                                                   63


<210>  111
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  111
gdtahhtatr ggaccaggga garcatttta tvcaacagav ataataggag atataagama     60

agc                                                                   63


<210>  112
<211>  63
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  112
tdtahhtatr ggaccaggga garcatttta tvcaacagav ataataggag atataagama     60

agc                                                                   63


<210>  113
<211>  61
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is a, c, g, t or u

<400>  113
arbaatagga ratataagam aagcayattg taaymttart rrarcavant ggratracac     60

t                                                                     61


<210>  114
<211>  61
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is a, c, g, t or u

<400>  114
crbaatagga ratataagam aagcayattg taaymttart rrarcavant ggratracac     60

t                                                                     61


<210>  115
<211>  61
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is a, c, g, t or u

<400>  115
grbaatagga ratataagam aagcayattg taaymttart rrarcavant ggratracac     60

t                                                                     61


<210>  116
<211>  61
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n is a, c, g, t or u

<400>  116
trbaatagga ratataagam aagcayattg taaymttart rrarcavant ggratracac     60

t                                                                     61


<210>  117
<211>  58
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, t or u

<400>  117
arbaatagga ratataagag cayattgtaa ymttartrra rcavantggr atracact       58


<210>  118
<211>  58
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, t or u

<400>  118
crbaatagga ratataagag cayattgtaa ymttartrra rcavantggr atracact       58


<210>  119
<211>  58
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, t or u

<400>  119
grbaatagga ratataagag cayattgtaa ymttartrra rcavantggr atracact       58


<210>  120
<211>  58
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, t or u

<400>  120
trbaatagga ratataagag cayattgtaa ymttartrra rcavantggr atracact       58


<210>  121
<211>  24
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  121
taaacaatgg ccattgacag aaga                                            24


<210>  122
<211>  25
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  122
tcaaaaattg ggcctgaaaa tccat                                           25


<210>  123
<211>  25
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  123
gctattaagt cttttgatgg gtcat                                           25


<210>  124
<211>  24
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  124
taaatttagg agtctttccc cata                                            24


<210>  125
<211>  62
<212>  DNA
<213>  Artificial

<220>
<223>  Tag sequence + HIV-1 sequence


<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  n is a, c, g, t or u

<400>  125
ttaggaatac cacaccctgc agggttaaaa aagaanaaat cagtgacagt actggatgtg     60

gg                                                                    62


<210>  126
<211>  76
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  126
gttagagccc tttagaacaa aaaatccaga aatagtcatc trccaatata tggatgactt     60

gtatgtagga tctgac                                                     76


<210>  127
<211>  76
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  127
gttagagccc tttagaacaa aaaatccaga aatagtcatc trtcaatata tggatgactt     60

gtatgtagga tctgac                                                     76


<210>  128
<211>  35
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  128
ggacaycaaa tgaaagattg yactgaraga caggc                                35


<210>  129
<211>  37
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  129
cccccctttt cttttaaaat tgtgratgaa tactgcc                              37


<210>  130
<211>  40
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is a, c, g, t or u

<400>  130
natctgctcc tgtatctaat agagcttcct ttagctgccc                           40


<210>  131
<211>  45
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is a, c, g, t or u

<400>  131
nttttctcca tttagtactg tcttttttct ttatggcaaa tactg                     45


<210>  132
<211>  54
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is a, c, g, t or u

<400>  132
ncaaatcatc catgtattga tagataacta tatctggatt ttgttttcta aaag           54


<210>  133
<211>  43
<212>  DNA
<213>  Human immunodeficiency virus type 1


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is a, c, g, t or u

<400>  133
ncatagattc tactactcct tgactttggg gattgtaggg aat                       43


<210>  134
<211>  22
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  134
gagggcttcc caccccctgc gt                                              22


<210>  135
<211>  30
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  135
tcttgcctgg agctgtttga tgccccagac                                      30


<210>  136
<211>  27
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  136
agaaagagca gaagacagtg gcaatga                                         27


<210>  137
<211>  22
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  137
ccaattccca tacattattg tg                                              22


<210>  138
<211>  24
<212>  DNA
<213>  Human immunodeficiency virus type 1

<400>  138
caatttctgg gtcccctcct gagg                                            24


