                         SEQUENCE LISTING

<110>  Stowers Institute for Medical Research
       LI, Rong
 
<120>  METHODS FOR TREATING POLYCYSTIC KIDNEY DISEASE (PKD) OR OTHER 
       CYST FORMING DISEASES

<130>  0312171

<150>  61/270,626
<151>  2009-07-10

<160>  26    

<170>  PatentIn version 3.3

<210>  1
<211>  1410
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic construct; FLAG-MEF2C

<400>  1
atggattaca aagaccatga cggtgattat aaagatcatg acatcgacta caaagacgat     60

gacgacaagc ttgcggccgc gaattcatcg atagatctga tatcggtacc aatggggaga    120

aaaaagattc agattacgag gataatggat gagcgtaaca gacaggtgac ttttacgaag    180

aggaaatttg gattgatgaa gaaggcttat gagctgagcg tgctgtgcga ctgtgagatt    240

gcactgatca tcttcaacag caccaacaag ctgttccagt acgccagcac tgacatggat    300

aaggtgttgc tcaagtacac cgagtacaac gagccgcacg agagccggac aaactcagac    360

attgtggagg cattgaacaa gaaagaaaac aaaggctctg aaagccccga tcctgactcc    420

tcttatgcac tcaccccacg cactgaagaa aaatacaaaa aaattaatga agaatttgat    480

aatatgatca agagtcataa aattcctgct gttccacctc ccagctttga gatgccagtt    540

accatcccag tgtccagcca taacagtttg gtgtacagca atcctgtcag cacactggga    600

aaccccaatc ttctgccact ggcccacccg tctctgcaga ggaatagtat gtctcctggt    660

gtaacacata gacctccaag tgcaggtaac acaggcggtc tgatgggcgg agatctgaca    720

tccggtgcag gcaccagcgc agggaatgga tacggcaacc cccggaactc accaggcctg    780

ctggtctcac ctggtaacct gaacaagaat atacaagcca aatctcctcc ccctatgaat    840

ctaggaatga ataatcgtaa gccagatctc cgcgttctta tcccacctgg cagcaagaac    900

acgatgccat cagtgaatca aaggataaat aactcccagt cggctcagtc attggctacc    960

ccggtggttt ccgtagcaac tcctacttta ccaggacaag gaatgggagg atatccatca   1020

gccatttcaa caacatatgg tactgagtac tctctgagta gcgcagatct gtcatctctg   1080

tctggcttca acactgccag tgcgctccac ctcggctctg taactggctg gcagcagcag   1140

cacctacata acatgccgcc atctgccctc agtcagttgg gagaccgtac caccacccct   1200

tcgagatacc cacaacacac cacgcgccac gaggcgggga ggtctcctgt tgacagcttg   1260

agcagctgta gcagttccta cgatgggagc gaccgagagg atcaccggaa cgaattccac   1320

tcccccattg gactcaccag accttcgccg gacgaaaggg aaagtccttc agtcaagcgc   1380

atgcgactct ctgaaggatg ggcaacataa                                    1410


<210>  2
<211>  1299
<212>  DNA
<213>  Mus musculus

<400>  2
atggggagaa aaaagattca gattacgagg ataatggatg agcgtaacag acaggtgact     60

tttacgaaga ggaaatttgg attgatgaag aaggcttatg agctgagcgt gctgtgcgac    120

tgtgagattg cactgatcat cttcaacagc accaacaagc tgttccagta cgccagcact    180

gacatggata aggtgttgct caagtacacc gagtacaacg agccgcacga gagccggaca    240

aactcagaca ttgtggaggc attgaacaag aaagaaaaca aaggctctga aagccccgat    300

cctgactcct cttatgcact caccccacgc actgaagaaa aatacaaaaa aattaatgaa    360

gaatttgata atatgatcaa gagtcataaa attcctgctg ttccacctcc cagctttgag    420

atgccagtta ccatcccagt gtccagccat aacagtttgg tgtacagcaa tcctgtcagc    480

acactgggaa accccaatct tctgccactg gcccacccgt ctctgcagag gaatagtatg    540

tctcctggtg taacacatag acctccaagt gcaggtaaca caggcggtct gatgggcgga    600

gatctgacat ccggtgcagg caccagcgca gggaatggat acggcaaccc ccggaactca    660

ccaggcctgc tggtctcacc tggtaacctg aacaagaata tacaagccaa atctcctccc    720

cctatgaatc taggaatgaa taatcgtaag ccagatctcc gcgttcttat cccacctggc    780

agcaagaaca cgatgccatc agtgaatcaa aggataaata actcccagtc ggctcagtca    840

ttggctaccc cggtggtttc cgtagcaact cctactttac caggacaagg aatgggagga    900

tatccatcag ccatttcaac aacatatggt actgagtact ctctgagtag cgcagatctg    960

tcatctctgt ctggcttcaa cactgccagt gcgctccacc tcggctctgt aactggctgg   1020

cagcagcagc acctacataa catgccgcca tctgccctca gtcagttggg agaccgtacc   1080

accacccctt cgagataccc acaacacacc acgcgccacg aggcggggag gtctcctgtt   1140

gacagcttga gcagctgtag cagttcctac gatgggagcg accgagagga tcaccggaac   1200

gaattccact cccccattgg actcaccaga ccttcgccgg acgaaaggga aagtccttca   1260

gtcaagcgca tgcgactctc tgaaggatgg gcaacataa                          1299


<210>  3
<211>  4113
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; HDAC5-GFP

<400>  3
atgaactctc ccaacgagtc ggatggcatg tcaggccggg aaccatcctt ggaaatcctg     60

ccacggactc ctctgcacag catccctgtg gcagtggagg tgaagccggt gctgccagga    120

gccatgccca gctccatggg gggtggaggt ggaggtagcc ccagccccgt ggagcttcgg    180

ggggctctgg cgggccccat ggaccctgcg ctacgggagc agcaactgca gcaggagctc    240

ctggtcctca agcagcagca gcagctccag aagcagctcc tgttcgccga gttccagaag    300

cagcacgacc acttgacgcg gcagcacgag gtccagctgc agaagcacct caagcagcag    360

caggagatgc tggcggctaa gaggcagcag gagctggagc agcagcggca gcgggagcag    420

cagcggcagg aggagctgga gaaacagcgg ctggagcagc agctgctcat cctgcgcaac    480

aaggagaaga gcaaagagag tgccatcgcc agcaccgagg taaagctgag gctccaggaa    540

ttcctgttgt ccaagtcaaa ggagcccacg ccaggcggcc tcaaccattc cctcccacag    600

caccccaaat gctggggagc ccaccacgct tctttggacc agagttcccc tccccagagc    660

ggccctcctg ggacgcctcc ctcctacaaa ttgcctttgc ttgggcccta tgacagccgt    720

gatgactttc ccctccgtaa aacggcctcg gaacccaact taaaagtacg ttcgaggcta    780

aaacagaagg tagccgagag gagaagcagt cccctcctgc gtcgaaagga tggcactgtt    840

attagtactt ttaagaagag agcagttgag atcaccggca cggggcctgg ggtgtcgtcc    900

gtgtgtaaca gtgcgcccgg ctctggcccc agctctccca acagttccca cagcaccatc    960

gctgagaacg gctttactgg ctcagtcccc aacatcccca ctgagatgat cccccagcac   1020

cgggccctcc ctctggacag ttccccaaac cagttcagcc tctatacgtc tccttctctg   1080

cccaacatct ccctagggct gcaggccact gtcactgtca ccaactcgca cctcaccgcc   1140

tccccgaagc tgtcaacaca gcaggaggct gagaggcagg cccttcagtc cctgcggcag   1200

ggcggcacac tgaccggcaa gttcatgagc acatcctcca tccctggctg cctgttggga   1260

gtggcactgg agggtgacac aagcccccac gggcacgctt ccctgctgca gcacgttttg   1320

ctcctggagc aggcccggca acagagcacg ctcatagcag tgccgctcca tgggcagtcc   1380

ccactggtga cgggtgaacg tgtggccacc agcatgagga cggtgggtaa gctcccgagg   1440

caccgacctc tgagccgcac tcagtcctcc ccgctgccgc agagtcccca ggccctgcag   1500

cagctggtca tgcagcagca gcaccagcag ttcctggaga agcagaagca gcagcagatg   1560

cagctgggca agatccttac caaaactggg gagctgtcaa ggcagcccac cactcacccg   1620

gaggagacag aagaggagct gacggagcag caggaggcct tgctgggaga gggggccctg   1680

accattcccc gggaaggctc tacagaaagt gagagcaccc aggaagacct agaagaggag   1740

gaggaggagg aggaggagga agaggaggac tgcattcagg tcaaggatga ggatggcgag   1800

agtggtcctg atgaaggccc tgacttagaa gagtccagtg ctggttacaa aaagttgttc   1860

gcagatgccc agcagttaca gcccctccag gtgtaccagg cacccctcag cctggccact   1920

gtgcctcatc aggccctggg ccgcacccag tcctcacctg ctgctcctgg gagcatgaag   1980

agccccacag accaacccac tgtggtgaag cacctcttca ccacaggtgt ggtctatgac   2040

acgttcatgc tgaagcacca gtgtatgtgc ggaaacacac acgtgcaccc agagcacgcc   2100

ggccgcatcc agagcatctg gtcccggctg caggaaactg gtctgctcgg caagtgtgag   2160

cggatccggg gtcgtaaagc cacactggat gaaatccaga ccgtgcactc tgagtaccac   2220

accctgctct atgggaccag cccccttaac cggcagaagc tggacagcaa gaagctgctt   2280

ggccccatca gccagaagat gtacgccatg ctgccctgtg ggggcattgg ggtggacagt   2340

gacacggtgt ggaatgagat gcactcctca agtgccgtgc gaatggcagt gggctgcctg   2400

gtggagctgg ccttcaaggt ggctgcagga gagctcaaga atggatttgc tatcatccgg   2460

cccccaggac accatgctga ggagtccaca gccatgggat tctgcttctt caactccgta   2520

gccatcacag ctaaactcct gcagcagaag ctgagcgtgg gcaaggtcct catcgtggac   2580

tgggatattc accatggcaa cggcacccag caagcattct acaacgatcc ctctgtgctc   2640

tacatctccc tgcatcgcta cgacaacggg aacttctttc caggctctgg ggctcctgaa   2700

gaggttggtg gagggccagg tgtggggtac aacgtaaatg tggcgtggac aggaggtgtg   2760

gatcccccca ttggagatgt ggaatacctg acagccttca ggacagtggt gatgcccatt   2820

gcccaggagt tctcacctga cgtcgtccta gtctccgctg ggtttgatgc tgttgaagga   2880

catctgtctc cactgggtgg ctattctgtc accgccagat gttttggcca cttgaccagg   2940

cagctcatga cactggctgg gggccgggtg gtgctggccc tggagggagg ccatgacttg   3000

accgccatct gtgatgcctc tgaggcctgt gtctcggctc tgctcagcgt ggagctgcag   3060

cccttggatg aagcagtctt gcagcaaaag cccagcgtca atgcggttgc cacactagag   3120

aaagtcatcg agatccagag caaacactgg agctgtgtac agaggtttgc cgctggtctg   3180

ggctgctcgc tgcgggaggc tcagacaggt gagaaagagg aggccgagac tgtgagcgcc   3240

atggccctgc tttccgtggg ggctgagcag gcccaggctg ttgccactca agagcacagc   3300

cccaggccag cagaggagcc catggagcag gagcctgccc tgaagcttcg aattctgcag   3360

tcgacggtac cgcgggcccg ggatccaccg gtcatggtga gcaagggcgc cgagctgttc   3420

accggcatcg tgcccatcct gatcgagctg aatggcgatg tgaatggcca caagttcagc   3480

gtgagcggcg agggcgaggg cgatgccacc tacggcaagc tgaccctgaa gttcatctgc   3540

accaccggca agctgcctgt gccctggccc accctggtga ccaccctgag ctacggcgtg   3600

cagtgcttct cacgctaccc cgatcacatg aagcagcacg acttcttcaa gagcgccatg   3660

cctgagggct acatccagga gcgcaccatc ttcttcgagg atgacggcaa ctacaagtcg   3720

cgcgccgagg tgaagttcga gggcgatacc ctggtgaatc gcatcgagct gaccggcacc   3780

gatttcaagg aggatggcaa catcctgggc aataagatgg agtacaacta caacgcccac   3840

aatgtgtaca tcatgaccga caaggccaag aatggcatca aggtgaactt caagatccgc   3900

cacaacatcg aggatggcag cgtgcagctg gccgaccact accagcagaa tacccccatc   3960

ggcgatggcc ctgtgctgct gcccgataac cactacctgt ccacccagag cgccctgtcc   4020

aaggacccca acgagaagcg cgatcacatg atctacttcg gcttcgtgac cgccgccgcc   4080

atcacccacg gcatggatga gctgtacaag tga                                4113


<210>  4
<211>  3342
<212>  DNA
<213>  Mus musculus

<400>  4
atgaactctc ccaacgagtc ggatggcatg tcaggccggg aaccatcctt ggaaatcctg     60

ccacggactc ctctgcacag catccctgtg gcagtggagg tgaagccggt gctgccagga    120

gccatgccca gctccatggg gggtggaggt ggaggtagcc ccagccccgt ggagcttcgg    180

ggggctctgg cgggccccat ggaccctgcg ctacgggagc agcaactgca gcaggagctc    240

ctggtcctca agcagcagca gcagctccag aagcagctcc tgttcgccga gttccagaag    300

cagcacgacc acttgacgcg gcagcacgag gtccagctgc agaagcacct caagcagcag    360

caggagatgc tggcggctaa gaggcagcag gagctggagc agcagcggca gcgggagcag    420

cagcggcagg aggagctgga gaaacagcgg ctggagcagc agctgctcat cctgcgcaac    480

aaggagaaga gcaaagagag tgccatcgcc agcaccgagg taaagctgag gctccaggaa    540

ttcctgttgt ccaagtcaaa ggagcccacg ccaggcggcc tcaaccattc cctcccacag    600

caccccaaat gctggggagc ccaccacgct tctttggacc agagttcccc tccccagagc    660

ggccctcctg ggacgcctcc ctcctacaaa ttgcctttgc ttgggcccta tgacagccgt    720

gatgactttc ccctccgtaa aacggcctcg gaacccaact taaaagtacg ttcgaggcta    780

aaacagaagg tagccgagag gagaagcagt cccctcctgc gtcgaaagga tggcactgtt    840

attagtactt ttaagaagag agcagttgag atcaccggca cggggcctgg ggtgtcgtcc    900

gtgtgtaaca gtgcgcccgg ctctggcccc agctctccca acagttccca cagcaccatc    960

gctgagaacg gctttactgg ctcagtcccc aacatcccca ctgagatgat cccccagcac   1020

cgggccctcc ctctggacag ttccccaaac cagttcagcc tctatacgtc tccttctctg   1080

cccaacatct ccctagggct gcaggccact gtcactgtca ccaactcgca cctcaccgcc   1140

tccccgaagc tgtcaacaca gcaggaggct gagaggcagg cccttcagtc cctgcggcag   1200

ggcggcacac tgaccggcaa gttcatgagc acatcctcca tccctggctg cctgttggga   1260

gtggcactgg agggtgacac aagcccccac gggcacgctt ccctgctgca gcacgttttg   1320

ctcctggagc aggcccggca acagagcacg ctcatagcag tgccgctcca tgggcagtcc   1380

ccactggtga cgggtgaacg tgtggccacc agcatgagga cggtgggtaa gctcccgagg   1440

caccgacctc tgagccgcac tcagtcctcc ccgctgccgc agagtcccca ggccctgcag   1500

cagctggtca tgcagcagca gcaccagcag ttcctggaga agcagaagca gcagcagatg   1560

cagctgggca agatccttac caaaactggg gagctgtcaa ggcagcccac cactcacccg   1620

gaggagacag aagaggagct gacggagcag caggaggcct tgctgggaga gggggccctg   1680

accattcccc gggaaggctc tacagaaagt gagagcaccc aggaagacct agaagaggag   1740

gaggaggagg aggaggagga agaggaggac tgcattcagg tcaaggatga ggatggcgag   1800

agtggtcctg atgaaggccc tgacttagaa gagtccagtg ctggttacaa aaagttgttc   1860

gcagatgccc agcagttaca gcccctccag gtgtaccagg cacccctcag cctggccact   1920

gtgcctcatc aggccctggg ccgcacccag tcctcacctg ctgctcctgg gagcatgaag   1980

agccccacag accaacccac tgtggtgaag cacctcttca ccacaggtgt ggtctatgac   2040

acgttcatgc tgaagcacca gtgtatgtgc ggaaacacac acgtgcaccc agagcacgcc   2100

ggccgcatcc agagcatctg gtcccggctg caggaaactg gtctgctcgg caagtgtgag   2160

cggatccggg gtcgtaaagc cacactggat gaaatccaga ccgtgcactc tgagtaccac   2220

accctgctct atgggaccag cccccttaac cggcagaagc tggacagcaa gaagctgctt   2280

ggccccatca gccagaagat gtacgccatg ctgccctgtg ggggcattgg ggtggacagt   2340

gacacggtgt ggaatgagat gcactcctca agtgccgtgc gaatggcagt gggctgcctg   2400

gtggagctgg ccttcaaggt ggctgcagga gagctcaaga atggatttgc tatcatccgg   2460

cccccaggac accatgctga ggagtccaca gccatgggat tctgcttctt caactccgta   2520

gccatcacag ctaaactcct gcagcagaag ctgagcgtgg gcaaggtcct catcgtggac   2580

tgggatattc accatggcaa cggcacccag caagcattct acaacgatcc ctctgtgctc   2640

tacatctccc tgcatcgcta cgacaacggg aacttctttc caggctctgg ggctcctgaa   2700

gaggttggtg gagggccagg tgtggggtac aacgtaaatg tggcgtggac aggaggtgtg   2760

gatcccccca ttggagatgt ggaatacctg acagccttca ggacagtggt gatgcccatt   2820

gcccaggagt tctcacctga cgtcgtccta gtctccgctg ggtttgatgc tgttgaagga   2880

catctgtctc cactgggtgg ctattctgtc accgccagat gttttggcca cttgaccagg   2940

cagctcatga cactggctgg gggccgggtg gtgctggccc tggagggagg ccatgacttg   3000

accgccatct gtgatgcctc tgaggcctgt gtctcggctc tgctcagcgt ggagctgcag   3060

cccttggatg aagcagtctt gcagcaaaag cccagcgtca atgcggttgc cacactagag   3120

aaagtcatcg agatccagag caaacactgg agctgtgtac agaggtttgc cgctggtctg   3180

ggctgctcgc tgcgggaggc tcagacaggt gagaaagagg aggccgagac tgtgagcgcc   3240

atggccctgc tttccgtggg ggctgagcag gcccaggctg ttgccactca agagcacagc   3300

cccaggccag cagaggagcc catggagcag gagcctgccc tg                      3342


<210>  5
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MIM forward

<400>  5
ccagccaggg ttgccatagc cac                                             23


<210>  6
<211>  29
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MIM reverse

<400>  6
tgactcttgc aaacggttca attaggtgc                                       29


<210>  7
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MEF2C RNAi

<400>  7
gaggaucacc ggaacgaau                                                  19


<210>  8
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MEF2C RNAi

<400>  8
uaguaugucu ccuggugua                                                  19


<210>  9
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MEF2C RNAi

<400>  9
gauaauggau gagcguaac                                                  19


<210>  10
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct; MEF2C RNAi

<400>  10
ccagaucucc gcguucuua                                                  19


<210>  11
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mef2c forward

<400>  11
cctggcagca agaacacgat                                                 20


<210>  12
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mef2c reverse

<400>  12
gactgagccg actgggagtt at                                              22


<210>  13
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mef2c probe

<400>  13
ccatcagtga atcaaa                                                     16


<210>  14
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mim forward; qpcr

<400>  14
gctcagctct caccagaatg tg                                              22


<210>  15
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mim rev; qpcr

<400>  15
cgatcaaagc actggagaac tg                                              22


<210>  16
<211>  14
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; mim probe

<400>  16
atgcggcacc ggag                                                       14


<210>  17
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; HDAC5 forward

<400>  17
gctcatcctg cgcaacaa                                                   18


<210>  18
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; HDAC5 reverse

<400>  18
gaattcctgg agcctcagct t                                               21


<210>  19
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; HDAC5 probe

<400>  19
caaagagagt gccatcg                                                    17


<210>  20
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; GATA6 forward

<400>  20
gctcatcctg cgcaacaa                                                   18


<210>  21
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic Construct; GATA6 reverse

<400>  21
gaattcctgg agcctcagct t                                               21


<210>  22
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  GATA6 probe

<400>  22
caaagagagt gccatcg                                                    17


<210>  23
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct

<400>  23
gaggaucacc ggaacgaau                                                  19


<210>  24
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct

<400>  24
uaguaugucu ccuggugua                                                  19


<210>  25
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct

<400>  25
gauaauggau gagcguaac                                                  19


<210>  26
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  Synthetic Construct

<400>  26
ccagaucucc gcguucuua                                                  19


