
                                SEQUENCE LISTING

<110> Malinowski, Douglas P.
      Murphy, Patricia G.

<120> Correlation of HPV E6 and E7 expression
  with progression of cervical disease
  

<130> 46143/388607

<150> 61/176,638          
<151> 2009-05-08  

<150> 61/276,670          
<151> 2009-09-15  

<160> 85

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 1
ctgcaatgtt tcaggaccca                                             20

<210> 2
<211> 28
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 2
aggagcgacc cagaaagtta ccacagtt                                    28

<210> 3
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 3
tcatgtatag ttgtttgcag ctctgt                                      26

<210> 4
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 4
caaaccgttg tgtgatttgt taatt                                       25

<210> 5
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 5
gctttttgtc cagatgtctt tgc                                         23

<210> 6
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 6
aactgtcaaa agccactgtg tcctgaagaa a                                31

<210> 7
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 7
agccactgtg tcctgaagaa aa                                          22

<210> 8
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 8
gaccccttat attatggaat ctttgc                                      26

<210> 9
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 9
caaagacatc tggacaaaa                                              19

<210> 10
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 10
ccggacagag cccattacaa t                                           21

<210> 11
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 11
acgtgtgtgc tttgtacgca c                                           21

<210> 12
<211> 28
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 12
tgttgcaagt gtgactctac gcttcggt                                    28

<210> 13
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 13
ttcacaacat agctgggcac tatag                                       25

<210> 14
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 14
ctgtcgtgct cggttgca                                               18

<210> 15
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 15
gccagtgcca ttcgt                                                  15

<210> 16
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 16
gactcagagg aagaaaacga tgaaa                                       25

<210> 17
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 17
gtgacgttgt ggttcggct                                              19

<210> 18
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 18
tggagttaat catcaacatt tacca                                       25

<210> 19
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 19
tgttcaaaaa tcctgcagaa agac                                        24

<210> 20
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 20
ggtatttcca atgccgagct t                                           21

<210> 21
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 21
tcggaaattg catgaac                                                17

<210> 22
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 22
tgatttgtgc caagcattgg                                             20

<210> 23
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 23
ttttgcattc cacgcactgt                                             20

<210> 24
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 24
caactataca caacattgaa c                                           21

<210> 25
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 25
acgaccctac aagctaccag attt                                        24

<210> 26
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 26
tgcaatatac acaggcaata gatacg                                      26

<210> 27
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 27
tgcacagaat tgaatacatg                                             20

<210> 28
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 28
gcactgacca ctgcagagat tt                                          22

<210> 29
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 29
cgcgcaggct gcatatg                                                17

<210> 30
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 30
ctgtttcgag gcggct                                                 16

<210> 31
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 31
acaagccgtt gtgtgaaata gaaa                                        24

<210> 32
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 32
caacgaccct tccactggtt                                             20

<210> 33
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 33
ctaaagcaca tattgggaa                                              19

<210> 34
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 34
gaccggtcga tgtatgtctt gtt                                         23

<210> 35
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 35
tgcatgatta cagctgggtt tc                                          22

<210> 36
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 36
cagatcatca agaacacg                                               18

<210> 37
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 37
gaggccagtg ccattcgt                                               18

<210> 38
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 38
tgtttctctg cgtcgttgga                                             20

<210> 39
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 39
ctgcaaccga gcacga                                                 16

<210> 40
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 40
gaggaaggtg gacaggacgt t                                           21

<210> 41
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 41
gcatgtttac acttgggttt cagt                                        24

<210> 42
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 42
catgttggag aagacc                                                 16

<210> 43
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 43
ccagctgaac gaccttacaa act                                         23

<210> 44
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 44
tccgctgtaa ttcttgtttg ca                                          22

<210> 45
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 45
atttgtgcaa cgaggtaga                                              19

<210> 46
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 46
caaacgaaga tttcacagca tagc                                        24

<210> 47
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 47
cgtgcctggt cacaacatgt                                             20

<210> 48
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 48
acagtaccga gggcagt                                                17

<210> 49
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 49
ccgacgtaga gaaactgcac tgt                                         23

<210> 50
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 50
cgttggcttg tgtcctctca                                             20

<210> 51
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 51
acgtgtaaaa acgcc                                                  15

<210> 52
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 52
cgctgtgcag tgtgttgga                                              19

<210> 53
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 53
ggcgttgtta caggttacac ttgt                                        24

<210> 54
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 54
accccgacgt agacaa                                                 16

<210> 55
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 55
aagtagataa tatgcgtgac cagcta                                      26

<210> 56
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 56
acggagcttc aattctgtaa cac                                         23

<210> 57
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 57
agaaagacgg gctggaca                                               18

<210> 58
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 58
caagctggac aggatacgtg tta                                         23

<210> 59
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 59
tgcgagctgt acaacactcg aa                                          22

<210> 60
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 60
aaagtgcact gttgcagg                                               18

<210> 61
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 61
aggaccgcag actaacacga a                                           21

<210> 62
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 62
ggctttggtc cacgcatatc                                             20

<210> 63
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 63
agaaacccaa gtataacatc                                             20

<210> 64
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 64
cacaattcag tgtacgtgtt gtaagtg                                     27

<210> 65
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 65
caccacggac acacaaaatt tag                                         23

<210> 66
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 66
agaacctgcg gaacgt                                                 16

<210> 67
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 67
ccggaccctg cacgaa                                                 16

<210> 68
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 68
agccttattt catgcaccga tt                                          22

<210> 69
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 69
tgtgtgaggt gctggaa                                                17

<210> 70
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 70
gcaattgcat tgtgacagaa aaag                                        24

<210> 71
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 71
gtctccagca ccccaaacat                                             20

<210> 72
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 72
atctaatagc acatggttgg a                                           21

<210> 73
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 73
agacacctaa gacagcaacg acaa                                        24

<210> 74
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 74
tgttgctttt ggtccatgca                                             20

<210> 75
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 75
aaacactggt gtaaaaca                                               18

<210> 76
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 76
aaaacggttt catcaaatag cagaa                                       25

<210> 77
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide primer

<400> 77
gatggtctcc agcaccgtgt a                                           21

<210> 78
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Oligonucleotide probe for real-time RT-PCR

<400> 78
agtggaccgg acgct                                                  15

<210> 79
<211> 458
<212> DNA
<213> Human papillomavirus type 16

<400> 79
caatgtttca ggacccacag gagcgacccg gaaagttacc acagttatgc acagagctgc 60
aaacaactat acatgatata atattagaat gtgtgtactg caagcaacag ttactgcgac 120
gtgaggtata tgactttgct tttcgggatt tatgcatagt atatagagat gggaatccat 180
atgctgtatg tgataaatgt ttaaagtttt attctaaaat tagtgagtat agacattatt 240
gttatagtgt gtatggaaca acattagaac agcaatacaa caaaccgttg tgtgatttgt 300
taattaggtg tattaactgt caaaagccac tgtgtcctga agaaaagcaa agacatctgg 360
acaaaaagca aagattccat aatataaggg gtcggtggac cggtcgatgt atgtcttgtt 420
gcagatcatc aagaacacgt agagaaaccc agctgtaa                         458

<210> 80
<211> 321
<212> DNA
<213> Human papillomavirus type 16

<400> 80
tcatgcatgg agatacacct acattgcatg aatatatgtt agatttgcaa ccagagacaa 60
ctgatctcta ctgttatgag caattaaatg acagctcaga ggaggaggat gaaatagatg 120
gtccagctgg acaagcagaa ccggacagag cccattacaa tattgtaacc ttttgttgca 180
agtgtgactc tacgcttcgg ttgtgcgtac aaagcacaca cgtagacatc cgtacgttgg 240
aagacctgtt aatgggcaca ctaggaattg tgtgccccat ctgttctcag aaaccataat 300
ctaccatggc tgatcctgca g                                           321

<210> 81
<211> 1154
<212> DNA
<213> Human papillomavirus type 16

<400> 81
catgatataa tattagaatg tgtgtactgc aagcaacagt tactgcgacg tgaggtgtat 60
taactgtcaa aagccactgt gtcctgaaga aaagcaaaga catctggaca aaaagcaaag 120
attccataat ataaggggtc ggtggaccgg tcgatgtatg tcttgttgca gatcatcaag 180
aacacgtaga gaaacccagc tgtaatcatg catggagata cacctacatt gcatgaatat 240
atgttagatt tgcaaccaga gacaactgat ctctactgtt atgagcaatt aaatgacagc 300
tcagaggagg aggatgaaat agatggtcca gctggacaag cagaaccgga cagagcccat 360
tacaatattg taaccttttg ttgcaagtgt gactctacgc ttcggttgtg cgtacaaagc 420
acacacgtag acattcgtac tttggaagac ctgttaatgg gcacactagg aattgtgtgc 480
cccatctgtt ctcagaaacc ataatctacc atggctgatc ctgcagcagc aacgaagtat 540
cctctcctga aattattagg cagcacttgg ccaaccactc cgccgcgacc cataccaaag 600
ccgtcgcctt gggcaccgaa gaaacacaga cgactatcca gcgaccaaga tcagagccag 660
acaccggaaa cccctgccac accactaagt tgttgcacag agactcagtg gacagtgctc 720
caatcctcac tgcatttaac agctcacaca aaggacggat taactgtaat agtaacacta 780
cacccatagt acatttaaaa ggctggaagc agtggcatta tcacatctca ctgcagccct 840
gaaatccccg ctcaagccat ccttccacgt cagcctcctg tgtagctggg accacaggtg 900
tacgccacca caactggtga atttttatat tttttgtaga gatggggatc tctctatgtt 960
gcccaggctg atcttgaact cctgggctca agagatcctc ccacctcagc ctcccaaagt 1020
gctgggatta caggtgtgag ccaccacgcc tggcctcctg ctatcattaa ataaagtaga 1080
aatgatttgt tgctgctaac ttccaaattt ctattagttc atgggagtaa aatttacgca 1140
gaataaatat attt                                                   1154

<210> 82
<211> 1000
<212> DNA
<213> Human papillomavirus type 18

<400> 82
tacttttaac aattgtagta tataaaaaag ggagtgaccg aaaacggtcg ggaccgaaaa 60
cggtgtatat aaaagatgtg agaaacacac cacaatacca tggcgcgctt tgaggatcca 120
acacggcgac cctacaagct acctgatctg tgcacggaac tgagcacttc actgcaagac 180
atagaaataa cctgtgtata ttgcaagaca gtattggaac ttacagaggt atttgaattt 240
gcatttaaag atttatttgt ggtgtataga gacagtatac cgcatgctgc atgccataaa 300
tgtatagatt tttattctag aattagagaa ttaagacatt attcagactc tgtgtatgga 360
gacacattgg aaaaactaac taacactggg ttatacaatt tattaataag gtgcctgcgg 420
tgccagaaac cgttgaatcc agcagaaaaa cttagacacc ttaatgaaaa acgacgattt 480
cacaacatag ctgggcacta tagaggccag tgccattcgt gctgcaaccg agcacgacag 540
gaaagactcc aacgacgcag agaaacacaa gtataatatt aagtatgcat ggacctaagg 600
caacattgca agacattgta ttgcatttag agccccaaaa tgaaattccg gttgaccttc 660
tatgtcacga gcaattaagc gactcagagg aagaaaacga tgaaatagat ggagttaatc 720
atcaacattt accagcccga cgagctgaac cacaacgtca cacaatgttg tgtatgtgtt 780
gtaagtgtga agccagaatt aagctagtag tagaaagctc agcagacgac cttcgagcat 840
tccagcagct gtttctgaac accctgtcct ttgtgtgtcc gtggtgtgca tcccagcagt 900
aagcaacaat ggctgatcca gaaggtacag acggggaggg cacgggttgt aacggctggt 960
tttatgtaca agctattgta gacaaaaaaa caggagatgt                       1000

<210> 83
<211> 450
<212> DNA
<213> Human papillomavirus type 31

<400> 83
atgttcaaaa atcctgcaga aagacctcgg aaattgcatg aactaagctc ggcattggaa 60
ataccctacg atgaactaag attgaattgt gtctactgca aaggtcagtt aacagaaaca 120
gaggtattag attttgcatt tacagattta acactagtat atagggacga cacaccacac 180
ggagtgtgtg caaaatgttt aagattttat tctaaagtaa gtgaatttag atggtataga 240
tatagtgtgt atggaacaac attagaaaaa ttgacaaaca aaggtatatg tgatttgtta 300
attaggtgta taacgtgtca aagaccgttg tgtccagaag aaaaacaaag acatttggat 360
aaaaagagac gattccacaa cataggagga aggtggacag gacgttgcat agtatgttgg 420
agaagacctc gtactgaaac ccaagtgtaa                                  450

<210> 84
<211> 450
<212> DNA
<213> Human papillomavirus type 33

<400> 84
atgtttcaag acactgagga aaaaccacga acattgcatg atttgtgcca agcattggag 60
acaactatac acaacattga actacagtgc gtggaatgca aaaaaccttt gcaacgatct 120
gaggtatatg attttgcatt tgcagattta acagttgtat atagagaggg aaatccattt 180
ggaatatgta aactgtgttt gcggttctta tctaaaatta gtgaatatag acattataat 240
tattctgtat atggaaatac attagaacaa acagttaaaa aacctttaaa tgaaatatta 300
attaggtgta ttatatgtca aagacctttg tgtcctcaag aaaaaaaacg acatgtggat 360
ttaaacaaac gatttcataa tatttcgggt cgttgggcag ggcgctgtgc ggcgtgttgg 420
aggtcccgac gtagagaaac tgcactgtga                                  450

<210> 85
<211> 910
<212> DNA
<213> Human papillomavirus type 45

<400> 85
aatactttta acaatgatac tacataaaaa agggtgtaac cgaaaacggt tgcaaccaaa 60
aacggtgcat ataaaaactt tgtggaaaag tgcattacag gatggcgcgc tttgacgatc 120
caacgcaacg accctacaag ctaccagatc tgtgcacaga attgaataca tcactacaag 180
acgtatctat tgcctgtgta tattgcaaag caacattgga acgcacagag gtatatcaat 240
ttgcttttaa agatttattt atagtgtata gagactgtat agcatatgct gcatgccata 300
aatgtataga cttttattcc agaattagag aattaagata ttattcaaac tctgtatatg 360
gagagacact ggaaaaaata actaatacag agttgtataa tttgttaata aggtgcctgc 420
ggtgccagaa accattgaac ccagcagaaa aacgtagaca ccttaaggac aaacgaagat 480
tccacagcat agctggacag taccgagggc agtgtaatac atgttgtgac caggcacggc 540
aagaaagact tcgcagacgt agggaaacac aagtatagca ataagtatgc atggaccccg 600
agcaacactg caagaaattg tattgcattt ggaacctcag aatgaattag atcctgttga 660
cctgttgtgt tacgagcaat taagcgagtc agaggaggaa aacgatgaag cagatggcgt 720
tagtcatgca caactaccag cccgacgagc cgaaccacag cgtcacaaaa ttttgtgtgt 780
atgttgtaag tgtgacggca gaattgagct tacagtagag agctcggcag atgaccttag 840
aacactacag cagctgtttt tgagcacctt gtcctttgtg tgtccgtggt gtgcaactaa 900
ccaataatct                                                        910
