                         SEQUENCE LISTING

<110>  Georg-August-Universitt Gttingen Stiftung ffentlichen 
       Rechts, Universittsmedizin
       Matrix Advanced Solutions Ltd
 
<120>  Biomarkers for predicting responsiveness of rectal cancers to radiochemotherapy

<130>  M66335PC

<150>  US 61/215,340
<151>  2009-05-04

<160>  35    

<170>  PatentIn version 3.5

<210>  1
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  Angiogenic factor with G patch and FHA domains 1, mRNA (cDNA 
       clone IMAGE:3659316)

accession number BC002828

<400>  1
cctaacatcc cattggcagt aggcgcattt actgtagatc acatttgagt ttattaaaat       60


<210>  2
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  cDNA clone IMAGE.30372542 5'. mRNA sequence [CD103176]

       accession number NIH_MGC_186

<400>  2
gatctggaaa atacttgttt ggggatcaat aatatgtttg ggctattatc taatgctgtg       60


<210>  3
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  PFTAIRE protein kinase 1 (PFTK1)

accession number NM_012395

<400>  3
tgtgtatatg acagccagta taatcaatac cctaggttat gcgtctatat gatactcatc       60


<210>  4
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  calcyphosine 2 (CAPS2)

accession number NM_032606

<400>  4
cagcaacatg agaagtgtga tacatgtgaa cccaacaaat tcaaagttgc acttttcaag       60


<210>  5
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  chromosome 10 open reading frame 25 (C10orf25)

       accession number NM001039380

<400>  5
ggatctcacg tgagattcct gaggcatgat tattcctgag ggtttgctcc accttctctg       60


<210>  6
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  unknown sequence

accession number ENST00000373014

<400>  6
gtggacaatt actgtgagta gtctagttga tttcctccat tttgtaaaac gaggcatcac       60


<210>  7
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  guanine nucleotide binding protein (G protein), beta 5, mRNA 
       (cDNA clone IMAGE:4131809)

accession number BC011671

<400>  7
aattttagct cttaatgaaa ataagaccaa aacctatgtg caggtatgct ggaacacatg       60


<210>  8
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  hypothetical protein MGC4771, mRNA (cDNA clone IMAGE:3619972)

       accession number BC069004

<400>  8
tgtcacattc tcagagagtt ggagggatta tgcgtcatcg taaacagggg gacagagcgc       60


<210>  9
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  scavenger receptor class F, member 1 (SCARFl), transcript variant
       4

accession number NM145351

<400>  9
ctgtcctgga ccctgtgtgc ctcataaggg ctattctttc tttcacgtgc aaaacatttt       60


<210>  10
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ST3 beta-galactoside alpha-2,3-sialyltransferase 6 (ST3GAL6)

       accession number NM_006100

<400>  10
atgtcacgaa gttcacctag ctggttttaa atacaacttt tctgacctca agagtccttt       60


<210>  11
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  zinc finger protein 382 (ZNF382)

accession number NM_032825

<400>  11
aacctcattg tccatcagaa aactcacaag gtagaaacca tgggaattca gtaagtaatg       60


<210>  12
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  cDNA FLJ40405 fis, clone TEST12037382

accession number AK097724

<400>  12
tcttttcaca gtataggagt tgtcatcatg acttccagtt accttctggg accggttgtc       60


<210>  13
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  clone IMAGE:3852236

accession number BC016872

<400>  13
tttaaacaca cgtggtcccc cgtctagaag cctctgcatt taagcacacg tggtcccccg       60


<210>  14
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  Homo sapiens atonal homolog 7 (Drosophila) (ATOH7)

       accession number NM_145178

<400>  14
actttcttaa actttgtgag tttgtcctgt tcgggtgaag ttacagtatc cattacttgt       60


<210>  15
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ALU1_HUMAN (P39188) Alu subfamily J sequence contamination 
       warning entry

accession number THC2306788

<400>  15
ggtcccactg tgcgccctgt cgccgccacc gcggaaaacg tcttgcacgt gcgaggggca       60


<210>  16
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  GLI pathogenesis-related 1 like 2(GLIPR1L2)

       accession number NM_152436

<400>  16
ggaccactct tacaaagttg gttgtgctgt tactccatgt tcaaaaattg gacatattat       60


<210>  17
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ALU7_HUMAN (P39194) Alu subfamily SQ sequence contamination 
       warning entry

accession number THC2433786

<400>  17
tcattcagtg gctggtgctt ccttaaatat tagtcattct gagattatgc aaatatctgt       60


<210>  18
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  cDNA clone IMAGE:5169062

accession number BC073918

<400>  18
agccccatca gaaacactgg gtattcacaa ctcaagtcta ccaattacat acagcagtgg       60


<210>  19
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  KIAA1324-like(KIAA1324L)

accession number NM_152748

<400>  19
ggagtaaaaa caatcaggac cattcggttt gctatagtga ctgctttttc taccctgaaa       60


<210>  20
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  RAS guanyl releasing protein 1 (calcium and DAG-regulated) 
       (RASGRP1)

<400>  20
acccagttcc gaatgatggt gtctctggga catttagcca aaggagccag cctggacgat       60


<210>  21
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  unknown

accession number THC2340114

<400>  21
ccctgtctct tctgtacttc gcacattcca cttactctac tagtttgatt tttgagtgtg       60


<210>  22
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ATPase, Class II, type 9A (ATP9A)

accession number NM_006045

<400>  22
tacccagaac gagatgattt tcaaacggct ccatctcgga acagtagcct acggcctcga       60


<210>  23
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  nephronophthisis 1 (juvenile) (NPHP1), transcript variant 1

       accession number NM_000272

<400>  23
tcgactcacc ctttcaggcc ttgttgcatc tcagataaac ctgtgactgc tggtaaaata       60


<210>  24
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  KIAA1529 (KIAA1529)

accession number NM_020893

<400>  24
tcatttgagg aggagctaaa gaggatccag gatgactgta catctcagat aaaggaggct       60


<210>  25
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ENST00000328281 Q7YYP5 (Q7YYP5) Hydroxyproline-rich glycoprotein 
       dz-hrgp

accession number THC2447236

<400>  25
ttggatcttc catactctct taagcaacct gtgttcctag ctctctccaa cttaagcagt       60


<210>  26
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  similar to hypothetical protein MGC27019 (LOC389833)

       accession number NM_001033515

<400>  26
ggcacaagct gcagcaccac ctgcacaaga tgctgcggga aatcacagat caggaacaca       60


<210>  27
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  cDNA FLJ90571 fis, clone OVARC1001725, highly similar to Homo 
       sapiens patched related protein TRC8 (TRC8) gene

       accession number AK075052

<400>  27
gcaaggtgca aagactatga agacttagaa cttaagagtt ctatggagat cttcagaaat       60


<210>  28
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  C9orf96 protein [THC2315644]

accession number BC036504

<400>  28
tttcaacatc tctccaccct aatacaagca cagctagttg gctttgtaac gcctcaaaga       60


<210>  29
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  hypothetical protein FLJ32549, mRNA (cDNA clone MGC:39839 
       IMAGE:5312126)

accession number BC036246

<400>  29
aatctaatgc ctgattcagt ctgagattta tgactcagcc ggttgatcca gcttaggtct       60


<210>  30
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ATPase, H+ transporting, lysosomal 31kDa, VI subunit E2 
       (ATP6V1E2)

accession number NM_080653

<400>  30
accaacagaa agttctttat ataagcctct gggaagtgaa gctagtgttg aaccactaaa       60


<210>  31
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  ENST00000303310 GB|AB065475.1|BAC05729.1 seven transmembrane 
       helix receptor

<400>  31
attgttgtct ctctcttcta tggtacaatc atatacatgt acctccagcc agcaaatact       60


<210>  32
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  trafficking protein particle complex 1 (TRAPPC1)

       accession number NM_021210

<400>  32
ggatgctctt ctctatccgc tcgtttgtca gcaagatgtc cccgctagac atgaaggatg       60


<210>  33
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  unknown

accession number THC2358306

<400>  33
tgtttataca ctagtttggc atctgataat ttcctatggg aaaaacatgt ttcagcttcc       60


<210>  34
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  hypoxia-inducible factor prolyl 4-hydroxylase, mRNA (cDNA clone 
       IMAGE:5017414)

accession number BC018731

<400>  34
tcatatgcat gctgtttgta gggaaataga ttatgctgtc agtcctgttg tgggagaggc       60


<210>  35
<211>  60
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<223>  kallikrein 4 (prostase, enamel matrix, prostate) (K.LK4)

       accession number NM_004917

<400>  35
cagacccttg ctcgctaacg acctcatgct catcaagttg gacgaatccg tgtccgagtc       60


