                         SEQUENCE LISTING

<110>  VINDURAMPULLE, Christofer
       BARRY, Eileen
       LEVINE, Myron
       GALEN, James
 
<120>  ATTENUATED SALMONELLA ENTERICA SEROVAR PARATYPHI A AND USES 
       THEREOF

<130>  56995

<150>  US 12/399,091
<151>  2009-03-06

<160>  50    

<170>  PatentIn version 3.5

<210>  1
<211>  489
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized mutated guaBA region

<400>  1
ggaacatcgc acagcgcacc tgagcggtat cgtctttgag cgtaaagtac cagtggcccg       60

acgcaggctg cgtgaaatta gaaatctcgc cgctgatcca tacctgtccc atctcctgtt      120

ctaacagcag acgaaccgtc tggttaaggc ggcttacggt aaaaattgag gaagtttgag      180

aggataacat gtgagcggga tcaaattcta aatcagcagg ttattcaatc ggtgtaggct      240

ggagcctgct tcgaagttcc tatactttct agagaatagg aacttcggaa taggaactaa      300

ggaggatatt catatgctct ctctctgcgt gctgtcgaaa ccatcgactt tatgaccgcg      360

cactgggcgc acctgccgta tgacttcctg ggtcgtgttt ccaaccgcat catcaatgaa      420

gtcaacggga tttcccgtgt ggtgtatgac atcagcggta aaccaccggc taccattgag      480

tgggaatga                                                              489


<210>  2
<211>  634
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized mutated clpX region

<400>  2
cctgagaatg gcatttgcgt cgtcgtgtgc ggcacaaaga acaaagaaga ggttttgact       60

catgacagat aaacgcaaag atggctcggg caaattgttg tactgctctt tttgcggcaa      120

aagccagcat gaagtgcgca agctgattgc cggtccatcc gtgtatatct gcgacgaatg      180

cgtcgattta tgtaacgaca ttattcgcgc ccttatatat atgcggccgc tgtaggctgg      240

agctgcttcg aagttcctat actttctaga gaataggaac ttcggaatag gaactaagga      300

ggatattcat atggcgcgcc tataagggcg aattccgtga cgaagcgctg aacgctatcg      360

ccaggaaagc aatggcgcgt aaaaccggtg cccgtggtct gcgttctatc gtcgaagcgg      420

cgctgctgga taccatgtac gatttgccat ctatggaaga cgtcgaaaaa gtggtgatcg      480

acgagtccgt tattgccggt cagagtaagc cgttgctgat ttacggcaaa ccggaagcgc      540

aggcttctgg cgaataatta aacattcata caatcagtta gccaaaaaag gggggatttt      600

atctcccctt tcgtttttcc tgtaaacacg ccgt                                  634


<210>  3
<211>  370
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized mutated clpP region

<400>  3
tccatcaggt tacaatcagt acagcaggtt ttttcaattt ttatccagga gacggaaatg       60

tcatacagcg gagaacgaga taatttggcc cctcatatat gaatatcctc cttagttcct      120

attccgaagt tcctattctc tagaaagtat aggaacttcg aagcagctcc agcctacacg      180

ctaggactca attttgaccc atcgtaattg atgccctgga cgcaagtgtg ccgctataca      240

cttcatcctt cacgctacct cggtgttggt tgccagcgcg cctcccggtg acttacttat      300

gtaagcgcct gcggagtcgc cgagttgccg ccttgatgta gctcgaatga ttttgtgtat      360

atactaatga                                                             370


<210>  4
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  4
ctgcagtcat tcccactcaa tggtagc                                           27


<210>  5
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  5
ggaacatcgc acagcgca                                                     18


<210>  6
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  6
gtgtaggagc tgcttcg                                                      17


<210>  7
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  7
catatgaata tcctccttag                                                   20


<210>  8
<211>  119
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  8
cgaaccgtct ggttaaggcg gcttacggta aaaattgagg aagtttgaga ggataacatg       60

tgagcgggat caaattctaa atcagcaggt tattcaatcg tgtaggctgg agctgcttc       119


<210>  9
<211>  120
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  9
ttcattgatg atgcggttgg aaacacgacc caggaagtca tacggcaggt gcgcccagtg       60

cgcggtcata aagtcgatgg tttcgacagc acgcagagag catatgaata tcctccttag      120


<210>  10
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  10
gaaggagtat tgcccatgct acgtatcg                                          28


<210>  11
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  11
catatgaagg agtattgccc atgctacgta tcgctaaaga ag                          42


<210>  12
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  12
atgcatctgc agtcattccc actcaatggt agccgg                                 36


<210>  13
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  13
acagataaac gcaaagatgg ctcgggcaaa                                        30


<210>  14
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  14
ttattcgcca gaagcctgcg cttccggttt                                        30


<210>  15
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  15
cctgagaatg gcatttgcgt cgtcgtgtgc                                        30


<210>  16
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  16
acggcgtgtt tacaggaaaa acgaaagggg                                        30


<210>  17
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  17
tcatacagcg gagaacgaga taatttggcc                                        30


<210>  18
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  18
ttacataagt aagtcactgg gaggcgcgct                                        30


<210>  19
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  19
tccatcaggt tacaatcagt acagcagatt                                        30


<210>  20
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  20
tcattagtat atacacaaaa tcattcgagc                                        30


<210>  21
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  21
gcggccgcga aggagagacg gaaatgtcat acagcggaga acgag                       45


<210>  22
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  22
tcgcgagaat tcttacataa gtaagtcact gggaggcgcg ct                          42


<210>  23
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  23
gcggccgcga aggagtttga ctcatgacag ataaacgcaa agatg                       45


<210>  24
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  24
catatgttat tcgccagaag cctgcgcttc cggttt                                 36


<210>  25
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  25
gcggccgctt acataagtaa gtcactggga ggcgcgct                               38


<210>  26
<211>  3120
<212>  DNA
<213>  Salmonella Typhi Ty2

<400>  26
ttgcccatgc tacgtatcgc taaagaagcc ctgacgtttg acgacgtcct ccttgttccc       60

gctcactcca ccgttttgcc gaatactgct gatctcagca cgcagttgac gaaaactatt      120

cgtctgaata ttcctatgct ttctgcggcg atggacaccg tgacggaagc gcgcctggca      180

attgccctgg cccaggaagg cggcatcggt tttatccaca aaaacatgtc tattgagcgc      240

caggcggaag aagttcgccg cgtgaagaaa cacgagtccg gcgtagtgac cgacccgcag      300

accgtcctgc caaccaccac gttgcatgaa gtgaaagccc tgaccgagcg taacggtttt      360

gcgggctatc cggtggtgac tgaagataac gagctggtgg gtatcatcac cggtcgtgac      420

gtgcgttttg tgactgacct gaaccagccg gtgagtgttt acatgacgcc gaaagagcgt      480

ctggtgaccg ttcgtgaagg cgaagcccgt gaagtcgtgc tggcaaaaat gcacgaaaaa      540

cgcgtagaaa aagcgctggt cgttgatgat aacttccatc tgcttggcat gattaccgta      600

aaagatttcc agaaagcgga acgtaaacca aactcctgta aagatgagca gggccgttta      660

cgtgtcggcg cggcggtcgg cgcaggcgcg ggcaacgaag agcgcgttga cgcgctggtg      720

gcggcaggcg ttgacgtcct gctgatcgac tcttctcacg gtcactctga aggcgtgttg      780

caacgtatcc gtgaaacccg tgctaaatat cctgacctgc aaatcatcgg cggcaacgtc      840

gcgacgggcg caggcgctcg cgcactggcg gaagccggtt gcagcgcggt gaaagtcggt      900

atcggcccgg gttccatctg taccactcgt atcgtgactg gcgtgggcgt tccgcagatt      960

accgctgttt ctgacgcagt tgaagcgctg gaaggcaccg ggattccggt tatcgctgac     1020

ggcggtatcc gtttctccgg cgacatcgcc aaagccatcg ccgcaggcgc gagcgctgtc     1080

atggtcggtt ctatgctggc gggtaccgaa gaatccccgg gcgaaatcga actctaccag     1140

ggccgttctt acaaatctta ccgcggcatg ggctcgctgg gcgcgatgtc caaaggttcc     1200

tctgaccgtt acttccagag cgacaacgcc gccgacaaac tggtgccgga aggtatcgaa     1260

ggccgcgtag cctataaagg tcgcctgaaa gagatcattc accagcagat gggcggcctg     1320

cgctcctgta tggggctgac cggttgtgct accatcgacg aactgcgtac taaagcggag     1380

tttgtgcgta tcagcggtgc gggtatccag gaaagccacg ttcacgacgt gaccatcacc     1440

aaagagtccc cgaactaccg tctgggctcc tgattttctt cgcccgacct tcgcgtcggg     1500

cgatttattt aatctgtttc acttgcctcg gaataagcgt caatgacgga aaacattcat     1560

aagcatcgca tcctcattct ggacttcggt tctcagtaca ctcaactggt tgcgcgccgc     1620

gtgcgtgagc tgggtgttta ctgcgaactg tgggcgtggg atgtgacaga agcacaaatt     1680

cgtgacttca acccaagcgg cattattctt tccggcggcc cggaaagcac caccgaagaa     1740

aacagcccgc gcgcgccgca gtatgtcttt gaagcaggcg tgccggtatt tggcgtctgc     1800

tacgggatgc agaccatggc gatgcagctt ggcggtcatg tagaaggttc taatgagcgt     1860

gaatttggtt acgcgcaggt cgaagtgctg accgacagcg cgctggttcg cggtattgaa     1920

gattccctga ccgccgacgg caaaccgctg ctggacgtgt ggatgagcca cggcgataaa     1980

gtgacggcga ttccgtccga cttcgtgacc gtagccagca ccgaaagctg cccgttcgcc     2040

atcatggcta acgaagaaaa acgcttctac ggcgtacagt tccacccgga agtgactcac     2100

acccgccagg gtatgcgcat gctggagcgt tttgtgcgtg atatctgcca gtgtgaagcc     2160

ctgtggacgc cggcgaagat catcgacgac gccgtggcgc gcattcgcga gcaggtaggc     2220

gacgataaag tgatcctcgg tctctccggc ggcgtggatt cttccgtaac cgcaatgctg     2280

ctgcaccgcg cgatcggtaa aaatctgacc tgtgtattcg tcgacaacgg cctgctgcgt     2340

ctcaacgaag ccgagcaggt gatggacatg tttggcgacc attttggtct gaacatcgtt     2400

cacgtaccgg cagaagatcg cttcctgtcc gcgttggctg gcgaaaacga tccggaagcg     2460

aagcgtaaga tcattggccg tgtttttgtg gaagtgttcg acgaagaagc gttgaaactg     2520

gaagacgtga aatggctggc gcagggcacc atctaccctg acgtcatcga atctgcggcg     2580

tctgcaaccg gtaaagcgca cgtcatcaaa tctcaccaca atgttggcgg cctgccgaaa     2640

gagatgaaga tggggctggt tgaaccgctg aaagagctgt tcaaagacga agtgcgtaag     2700

attggtctgg agctgggcct gccgtacgac atgctgtacc gtcatccgtt cccggggccg     2760

ggcctcggcg tacgtgtact gggtgaagtg aagaaagagt actgcgacct gctgcgccgt     2820

gctgatgcca tcttcattga agagctgcgt aaggcggatc tgtacgacaa agtcagccag     2880

gcgttcaccg tcttcctgcc agtacgctcc gttggcgtaa tgggcgatgg tcgtaagtac     2940

gattgggtgg tctctctgcg tgctgtcgaa accatcgact ttatgaccgc gcactgggcg     3000

cacctgccgt atgacttcct gggtcgtgtt tccaaccgca tcatcaatga agtcaacggg     3060

atttcccgtg tggtgtatga catcagcggt aaaccaccgg ctaccattga gtgggaataa     3120


<210>  27
<211>  2147
<212>  DNA
<213>  Salmonella Typhi Ty2

<400>  27
ttattcgcca gaagcctgcg cttccggttt gccgtaaatc agcaacggct tactctgacc       60

ggcaataacg gactcgtcaa tcaccacttt ttcgacgtct tccatagatg gcaaatcgta      120

catggtatcc agcagcgccg cttcgacgat agaacgcagg ccacgggcac cagttttacg      180

cgccatcgct ttcctggcga tagcgttcag cgcttcgtca cggaattcca gatcgacgcc      240

ttccaggtta aacagcgcct gatactgctt ggtcagcgca tttttcggct ctttcaggat      300

ttgaaccagc gcttcttcgc tgagttcgtt cagcgtcgcc accactggca gacgaccgat      360

aaactcagga atcagaccaa atttgatcaa atcttccggt tcaacctgcg acaacagctc      420

gccttcactg gctttgtcgg acttcgcttt caccgtcgcg ccaaaaccaa tgccggagcc      480

ggtttcaaca cggttagcga tcactttatc cagaccggca aacgcgccgc cgcagataaa      540

cagaatctta gaggtatcta cctgtaagaa ctcctgctgc ggatgtttgc gaccgccctg      600

cggtggaacc gcggcgacgg tgccttcgat cagtttcagc aacgcctgct gtacgccttc      660

gccggaaaca tcgcgggtaa tggacggatt gtctgattta cgcgaaatct tatcgatttc      720

atcaatgtag acaatcccac gctgcgcttt ttgcacgtcg tagtcgcatt tctgcaacag      780

tttctgaatg atattctcga cgtcttcccc cacgtaaccc gcttcggtca gcgtggtcgc      840

atccgccata gtgaacggca catccagcaa gcgcgccagc gtttccgcca gcagcgtttt      900

accggaaccg gtcggtccag tcagcagaat gttgcttttg cctaactcga cgccattgct      960

ggtatcgccg ttacgcagac gcttgtagtg gttatagacc gccaccgcca gcactttttt     1020

cgcctgctcc tggccgataa cgtaatcgtc caggtgagta cgaatttcat gcggcgtcgg     1080

cagcgcacta cgttcacggt gcggagcaac ttctttaatt tcttcgcgaa taatgtcgtt     1140

acataaatcg acgcattcgt cgcagatata cacggatgga ccggcaatca gcttgcgcac     1200

ttcatgctgg cttttgccgc aaaaagagca gtacaacaat ttgcccgagc catctttgcg     1260

tttatctgtc atgagtcaaa acctcttctt tgttctttgt gccgcacacg acgacgcaaa     1320

tgccattctc aggcgcaagc cgctaatcag cgttgtgccg cccttcatta gtatatacac     1380

aaaatcattc gagctacatc aaggcggcaa ctcagcgact ccgcaggcgc ttacataagt     1440

aagtcactgg gaggcgcgct ggcaaccaac accgaggtag cgtgaaggat gaagtgtata     1500

gcggcacact tgcgtccagg gcatcaatta cgatgggtca aaattgagtc aaccaaaccg     1560

tactctaccg cttcaggcgc ggagaggaag cgatcgcgct cagtatcacg ttcaatctgc     1620

tcaagagatt gacccgtatg atgcgccata agttcattca tgcgcccttt tactttcaaa     1680

atttcgcggg cgtgaatttc aatatccgtc gcctggccct gatagccgcc cagcggctgg     1740

tggatcatga cgcgagagtt cggcaagcag aaacgtttgc ctttcgcccc ggcagtcagc     1800

agaaacgccc ccatagaggc cgcctgtccc atacaaatgg tgctgacgtc tggcttaata     1860

aactgcatgg tgtcatagat ggacatcccc gcagtaatta cgccgccagg agaattaatg     1920

tacagataga tatctttttc cgggttttcc gcttccagga acagcatctg cgccacgatc     1980

aggttagcca tatggtcttc gacctggccg gtcagaaata tgacgcgttc cttaagtaga     2040

cgagaataga tatcaaaaga gcgctcaccg cgtgaggtct gttcaatgac catcggcacc     2100

agcgccatat gaggggccaa attatctcgt tctccgctgt atgacat                   2147


<210>  28
<211>  687
<212>  DNA
<213>  E. coli

<400>  28
cctagggcca gcaaaaggcc aggaaccgta aaaaggccgc gttgctggcg tttttccata       60

ggctccgccc ccctgacgag catcacaaaa atcgacgctc aagtcagagg tggcgaaacc      120

cgacaggact ataaagatac caggcgtttc cccctggaag ctccctcgtg cgctctcctg      180

ttccgaccct gccgcttacc ggatacctgt ccgcctttct cccttcggga agcgtggcgc      240

tttctcatag ctcacgctgt aggtatctca gttcggtgta ggtcgttcgc tccaagctgg      300

gctgtgtgca cgaacccccc gttcagcccg accgctgcgc cttatccggt aactatcgtc      360

ttgagtccaa cccggtaaga cacgacttat cgccactggc agcagccact ggtaacagga      420

ttagcagagc gaggtatgta ggcggtgcta cagagttctt gaagtggtgg cctaactacg      480

gctacactag aaggacagta tttggtatct gcgctctgct gaagccagtt accttcggaa      540

aaagagttgg tagctcttga tccggcaaac aaaccaccgc tggtagcggt ggtttttttg      600

tttgcaagca gcagattacg cgcagaaaaa aaggatctca agaagatcct ttgatctttt      660

ctacggggtc tgacgctcag tagatct                                          687


<210>  29
<211>  635
<212>  DNA
<213>  Salmonella typhimurium

<400>  29
cctaggagat acttaacagg gaagtgagag ggccgcggca aagccgtttt tccataggct       60

ccgcccccct gacaagcatc acgaaatctg acgctcaaat cagtggtggc gaaacccgac      120

aggactataa agataccagg cgtttccccc tggcggctcc ctcgtgcgct ctcctgttcc      180

tgcctttcgg tttaccggtg tcattccgct gttatggccg cgtttgtctc attccacgcc      240

tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg      300

ttcagtccga ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggaaagac      360

atgcaaaagc accactggca gcagccactg gtaattgatt tagaggagtt agtcttgaag      420

tcatgcgccg gttaaggcta aactgaaagg acaagttttg gtgactgcgc tcctccaagc      480

cagttacctc ggttcaaaga gttggtagct cagagaacct tcgaaaaacc gccctgcaag      540

gcggtttttt cgttttcaga gcaagagatt acgcgcagac caaaacgatc tcaagaagat      600

catcttatta atcagataaa atatttctag gatct                                 635


<210>  30
<211>  1955
<212>  DNA
<213>  E. coli

<400>  30
cctaggtttc acctgttcta ttaggtgtta catgctgttc atctgttaca ttgtcgatct       60

gttcatggtg aacagcttta aatgcaccaa aaactcgtaa aagctctgat gtatctatct      120

tttttacacc gttttcatct gtgcatatgg acagttttcc ctttgatatc taacggtgaa      180

cagttgttct acttttgttt gttagtcttg atgcttcact gatagataca agagccataa      240

gaacctcaga tccttccgta tttagccagt atgttctcta gtgtggttcg ttgtttttgc      300

gtgagccatg agaacgaacc attgagatca tgcttacttt gcatgtcact caaaaatttt      360

gcctcaaaac tggtgagctg aatttttgca gttaaagcat cgtgtagtgt ttttcttagt      420

ccgttacgta ggtaggaatc tgatgtaatg gttgttggta ttttgtcacc attcattttt      480

atctggttgt tctcaagttc ggttacgaga tccatttgtc tatctagttc aacttggaaa      540

atcaacgtat cagtcgggcg gcctcgctta tcaaccacca atttcatatt gctgtaagtg      600

tttaaatctt tacttattgg tttcaaaacc cattggttaa gccttttaaa ctcatggtag      660

ttattttcaa gcattaacat gaacttaaat tcatcaaggc taatctctat atttgccttg      720

tgagttttct tttgtgttag ttcttttaat aaccactcat aaatcctcat agagtatttg      780

ttttcaaaag acttaacatg ttccagatta tattttatga atttttttaa ctggaaaaga      840

taaggcaata tctcttcact aaaaactaat tctaattttt cgcttgagaa cttggcatag      900

tttgtccact ggaaaatctc aaagccttta accaaaggat tcctgatttc cacagttctc      960

gtcatcagct ctctggttgc tttagctaat acaccataag cattttccct actgatgttc     1020

atcatctgag cgtattggtt ataagtgaac gataccgtcc gttctttcct tgtagggttt     1080

tcaatcgtgg ggttgagtag tgccacacag cataaaatta gcttggtttc atgctccgtt     1140

aagtcatagc gactaatcgc tagttcattt gctttgaaaa caactaattc agacatacat     1200

ctcaattggt ctaggtgatt ttaatcacta taccaattga gatgggctag tcaatgataa     1260

ttactagtcc ttttcctttg agttgtgggt atctgtaaat tctgctagac ctttgctgga     1320

aaacttgtaa attctgctag accctctgta aattccgcta gacctttgtg tgtttttttt     1380

gtttatattc aagtggttat aatttataga ataaagaaag aataaaaaaa gataaaaaga     1440

atagatccca gccctgtgta taactcacta ctttagtcag ttccgcagta ttacaaaagg     1500

atgtcgcaaa cgctgtttgc tcctctacaa aacagacctt aaaaccctaa aggcttaagt     1560

agcaccctcg caagctcggg caaatcgctg aatattcctt ttgtctccga ccatcaggca     1620

cctgagtcgc tgtctttttc gtgacattca gttcgctgcg ctcacggctc tggcagtgaa     1680

tgggggtaaa tggcactaca ggcgcctttt atggattcat gcaaggaaac tacccataat     1740

acaagaaaag cccgtcacgg gcttctcagg gcgttttatg gcgggtctgc tatgtggtgc     1800

tatctgactt tttgctgttc agcagttcct gccctctgat tttccagtct gaccacttcg     1860

gattatcccg tgacaggtca ttcagactgg ctaatgcacc cagtaaggca gcggtatcat     1920

caacaggctt acccgtctta ctgtcaaccg gatct                                1955


<210>  31
<211>  1686
<212>  DNA
<213>  Escherichia coli

<400>  31
cacttttgtt acccgccaaa caaaacccaa aaacaaccca tacccaaccc aataaaacac       60

caaaacaaga caaataatca ttgattgatg gttgaaatgg ggtaaacttg acaaacaaac      120

ccacttaaaa cccaaaacat acccaaacac acaccaaaaa aacaccataa ggagttttat      180

aaatgttggt attcattgat gacggttcaa caaacatcaa actacagtgg caggaaagcg      240

acggaacaat taaacagcac attagcccga acagcttcaa acgcgagtgg gcagtctctt      300

ttggtgataa aaaggtcttt aactacacac tgaacggcga acagtattca tttgatccaa      360

tcagcccgga tgctgtagtc acaaccaata tcgcatggca atacagcgac gttaatgtcg      420

ttgcagtgca tcacgcctta ctgaccagtg gtctgccggt aagcgaagtg gatattgttt      480

gcacacttcc tctgacagag tattacgaca gaaataacca acccaatacg gaaaatattg      540

agcgtaagaa agcaaacttc cggaaaaaaa ttacattaaa tggcggggat acattcacaa      600

taaaagatgt aaaagtcatg cctgaatcta taccggcagg ttatgaagtt ctacaagaac      660

tggatgagtt agattcttta ttaattatag atctcggggg caccacatta gatatttctc      720

aggtaatggg gaaattatcg gggatcagta aaatatacgg agactcatct cttggtgtct      780

ctctggttac atctgcagta aaagatgccc tttctcttgc gagaacaaaa ggaagtagct      840

atcttgctga cgatataatc attcacagaa aagataataa ctatctgaag caacgaatta      900

atgatgagaa caaaatatca atagtcaccg aagcaatgaa tgaagcactt cgtaaacttg      960

agcaacgtgt attaaatacg ctcaatgaat tttctggtta tactcatgtt atggttatag     1020

gcggtggcgc agaattaata tgcgatgcag taaaaaaaca cacacagatt cgtgatgaac     1080

gttttttcaa aaccaataac tctcaatatg atttagttaa cggtatgtat ctcataggta     1140

attaatgatg gacaagcgca gaaccattgc cttcaaacta aatccagatg taaatcaaac     1200

agataaaatt gtttgtgata cactggacag tatcccgcaa ggggaacgaa gccgccttaa     1260

ccgggccgca ctgacggcag gtctggcctt atacagacaa gatccccgga cccctttcct     1320

tttatgtgag ctgctgacga aagaaaccac attttcagat atcgtgaata tattgagatc     1380

gctatttcca aaagagatgg ccgattttaa ttcttcaata gtcactcaat cctcttcaca     1440

acaagagcaa aaaagtgatg aagagaccaa aaaaaatgcg atgaagctaa taaattaatt     1500

caattattat tgagttccct ttatccacta tcaggctgga taaagggaac tcaatcaagt     1560

tattttctta ccagtcatta cataatcgtt attatgaaat aatcgtttgc actgtctctg     1620

ttattcaggc aatttcaata aaggcacttg ctcacgctct gtcattttct gaaactcttc     1680

atgctg                                                                1686


<210>  32
<211>  367
<212>  DNA
<213>  Escherichia coli

<400>  32
gacagtaaga cgggtaagcc tgttgatgat accgctgcct tactgggtgc attagccagt       60

ctgaatgacc tgtcacggga taatccgaag tggtcagact ggaaaatcag agggcaggaa      120

ctgctgaaca gcaaaaagtc agatagcacc acatagcaga cccgccataa aacgccctga      180

gaagcccgtg acgggctttt cttgtattat gggtagtttc cttgcatgaa tccataaaag      240

gcgcctgtag tgccatttac ccccattcac tgccagagcc gtgagcgcag cgaactgaat      300

gtcacgaaaa agacagcgac tcaggtgcct gatggtcgga gacaaaagga atattcagcg      360

atttgcc                                                                367


<210>  33
<211>  459
<212>  DNA
<213>  Escherichia coli

<400>  33
ttctgtggta gcacagaata atgaaaagtg tgtaaagaag ggtaaaaaaa accgaatgcg       60

aggcatccgg ttgaaatagg ggtaaacaga cattcagaaa tgaatgacgg taataaataa      120

agttaatgat gatagcggga gttattctag ttgcgagtga aggttttgtt ttgacattca      180

gtgctgtcaa atacttaaga ataagttatt gattttaacc ttgaattatt attgcttgat      240

gttaggtgct tatttcgcca ttccgcaata atcttaaaaa gttcccttgc atttacattt      300

tgaaacatct atagcgataa atgaaacatc ttaaaagttt tagtatcata ttcgtgttgg      360

attattctgc atttttgggg agaatggact tgccgactga ttaatgaggg ttaatcagta      420

tgcagtggca taaaaaagca aataaaggca tataacaga                             459


<210>  34
<211>  734
<212>  DNA
<213>  Shigella flexneri 2a strain CVD 1208s

<400>  34
catatgattg acctgaatga atatacagta ttggaatgca ttatccggag tgttgtgtaa       60

caatgtctgg ccaggtttgt ttcccggaac cgaggtcaca acatagtaaa agcgctattg      120

gtaatggtac aatcgcgcgt ttacacttat tcagaacgac aggagacacg aacatggcca      180

gcagaggcgt aaacaaggtt attctcgttg gtaatctggg tcaggacccg gaagtacgct      240

acatgccaaa tggtggcgca gttgccaaca ttacgctggc tacttccgaa tcctggcgtg      300

ataaagcgac cggcgagatg aaagaacaga ctgaatggca ccgcgttgtg ctgttcggca      360

aactggcaga agtggcgagc gaatatctgc gtaaaggttc tcaggtttat atcgaaggtc      420

agctgcgtac ccgtaaatgg accgatcaat ccggtcagga tcgctacacc acagaagtcg      480

tggtgaacgt tggcggcacc atgcagatgc tgggtggtcg tcagggtggt ggcgctccgg      540

caggtggcaa tatcggtggt ggtcagccgc agggcggttg gggtcagcct cagcagccgc      600

agggtggcaa tcagttcagc ggcggcgcgc agtctcgccc gcagcagtcc gctccggcag      660

cgccgtctaa cgagccgccg atggactttg atgatgacat tccgttctga tttgtcatta      720

aaacaatagc tagc                                                        734


<210>  35
<211>  1467
<212>  DNA
<213>  Salmonella Paratyphi A 9150


<220>
<221>  misc_feature
<223>  guaB

<400>  35
atgctacgta tcgctaaaga agccctgacg tttgacgacg tcctccttgt tcccgctcac       60

tccaccgttt tgccgaatac tgccgatctc agcacgcagt tgacgaaaac tattcgtctg      120

aatattccta tgctttctgc ggcgatggac accgtgacgg aagcgcgcct ggcaattgcc      180

ctggcccagg aaggcggcat tggttttatc cacaaaaaca tgtccattga gcgccaggcg      240

gaagaagttc gccgcgtgaa gaaacacgag tccggcgtag tgaccgaccc gcagaccgtc      300

ctgccaacca ccacgttgca tgaagtgaaa gccctgaccg agcgtaacgg ttttgcgggc      360

tatccggtgg tgactgaaga taacgagctg gtggggatca tcaccggtcg tgacgtgcgt      420

tttgtgactg acctgaacca gccggtaagt gtctacatga cgccgaaaga gcgtctggtg      480

accgttcgtg aaggcgaagc ccgtgaagtc gtgctggcaa aaatgcacga aaaacgcgta      540

gaaaaagcgc tggtcgttga tgataacttc catctgcttg gcatgattac cgtaaaagat      600

ttccagaaag cggaacgtaa accaaactcc tgtaaagatg agcagggccg tttacgtgtc      660

ggcgcggcgg tcggcgcagg cgcgggcaac gaagagcgcg ttgacgcgct ggtggcggca      720

ggcgttgacg tactgctgat cgactcctct cacggtcact ctgaaggcgt gttgcaacgt      780

atccgtgaga cgcgtgctaa atatcctgac ctgcaaatca tcggcggcaa cgttgcgacg      840

ggcgcaggcg ctcgcgcact ggcggaagcc ggttgcagcg cggtgaaagt gggtatcggc      900

ccgggctcca tctgtaccac tcgtatcgtg actggtgtgg gcgttccgca gatcaccgct      960

gtttccgacg cggtagaagc gctggaaggc accggaattc cggttatcgc tgacggcggt     1020

atccgtttct ccggcgacat cgccaaagcc atcgccgcag gcgcgagcgc cgtgatggtg     1080

ggctctatgc tggccggtac cgaagaatcc ccgggcgaaa tcgaactcta ccagggccgt     1140

tcgtacaaat cttaccgcgg catgggctcg ctgggcgcga tgtccaaagg ttcctccgac     1200

cgttacttcc agagcgacaa cgccgctgac aaactggtgc cggaaggtat cgaaggccgc     1260

gtagcctata aaggtcgcct gaaagagatc attcaccagc agatgggcgg cctgcgctcc     1320

tgtatggggc tgaccggttg tgctaccatc gacgaactgc gtactaaagc ggagtttgtg     1380

cgtatcagcg gtgcgggtat ccaggaaagc cacgttcacg acgtgaccat caccaaagag     1440

tccccgaact accgtctggg ctcctga                                         1467


<210>  36
<211>  1578
<212>  DNA
<213>  Salmonella Paratyphi A 9150


<220>
<221>  misc_feature
<223>  guaA

<400>  36
atgacggaaa acattcataa gcatcgcatc ctcattctgg acttcggttc tcagtacact       60

caactggttg cgcgccgcgt gcgtgagctg ggtgtttact gcgaactgtg ggcgtgggat      120

gtgacagaag cacaaattcg tgacttcaac ccaagcggca ttattctttc cggcggcccg      180

gaaagcacca ccgaagaaaa cagcccgcgc gcgccgcagt atgtctttga agcaggcgtg      240

ccggtatttg gcgtttgcta tggtatgcag accatggcga tgcagcttgg cggtcatgta      300

gaaggttcta atgagcgtga atttggttat gcgcaggtcg aagtgttgac cgacagcgcg      360

ctggttcgcg gtattgaaga ttccctgacc gcagacggca aaccgctgct ggacgtgtgg      420

atgagccacg gcgataaagt gacggcgatt ccgtccgact tcgtgaccgt cgccagcacc      480

gagagctgcc cgttcgccat catggctaac gaagaaaaac gcttctacgg cgtacagttc      540

cacccggaag tgacccacac ccgccagggg atgcgcatgc tggagcgttt tgtgcgtgat      600

atctgccagt gtgaagcgtt gtggacgccg gcgaagatca tcgacgacgc cgtggcgcgc      660

attcgcgagc aggtaggcga cgataaagtg atcctcggtc tctccggcgg cgtggattct      720

tccgtcaccg caatgctgct gcaccgcgcg atcggtaaaa atctgacctg tgtattcgtc      780

gacaacggcc tgctgcgtct caacgaagcc gagcaggtga tggacatgtt tggcgaccat      840

tttggcctga atatcgttca cgttccggcg gaagagcgct tcctgtccgc gttggctggc      900

gaaaacgatc cggaagcgaa gcgtaagatc attggccgtg tttttgtgga agtgttcgac      960

gaagaagcgt tgaaactgga agacgtgaaa tggctggcgc agggcaccat ctaccctgac     1020

gtcatcgagt ctgcggcgtc tgcaaccggt aaagcgcacg tcatcaaatc tcaccacaat     1080

gttggcggcc tgccgaaaga gatgaagatg gggctggttg aaccgctgaa agagctgttc     1140

aaagacgaag tgcgtaagat tggtctggag ctgggcctgc cgtacgacat gctgtaccgt     1200

catccgttcc cggggccggg cctcggcgta cgtgtactgg gtgaagtgaa gaaagagtac     1260

tgcgacctgt tgcgccgtgc tgacgccatc ttcattgaag agctgcgtaa ggcggatctg     1320

tacgacaaag tcagccaggc gttcaccgtc ttcctgccag tacgctccgt tggcgtaatg     1380

ggcgatggtc gtaagtacga ttgggtggtc tccctgcgtg ctgtcgaaac catcgacttt     1440

atgactgcgc actgggcgca tctgccgtat gacttcctgg gtcgtgtttc caaccgcatc     1500

atcaatgaag tcaacgggat ttcccgtgtg gtgtatgaca tcagcggtaa accaccggct     1560

accattgagt gggaataa                                                   1578


<210>  37
<211>  624
<212>  DNA
<213>  Salmonella Paratyphi A 9150


<220>
<221>  misc_feature
<223>  clpP

<400>  37
atgtcataca gcggagaacg agataatttg gcccctcata tggcgctggt gccgatggtc       60

attgaacaga cctcacgcgg tgagcgctct tttgatatct attctcgtct acttaaggaa      120

cgcgtcatat ttctgaccgg ccaggtcgaa gaccatatgg ctaacctgat cgtggcgcag      180

atgctgttcc tggaagcgga aaacccggaa aaagatatct atctgtacat taattctcct      240

ggcggcgtaa ttactgcggg gatctccatc tatgacacca tgcagtttat taagccagac      300

gtcagcacca tttgtatggg acaggcggcc tctatggggg cgtttctgct gactgccggg      360

gcgaaaggca aacgtttctg cttgccgaac tctcgcgtca tgatccacca gccgctgggc      420

ggctaccagg gccaggcgac ggatattgaa attcacgccc gcgaaatttt gaaagtaaaa      480

gggcgcatga atgaacttat ggcgcatcat acgggtcaat ctcttgagca gattgaacgt      540

gatactgagc gcgatcgctt cctctccgcg cctgaagcgg tagagtacgg tttggttgac      600

tcaattttga cccatcgtaa ttga                                             624


<210>  38
<211>  1272
<212>  DNA
<213>  Salmonella Paratyphi A 9150


<220>
<221>  misc_feature
<223>  clpX

<400>  38
atgacagata aacgcaaaga tggctcgggc aaattgttgt actgctcttt ttgcggcaaa       60

agccagcatg aagtgcgcaa gctgattgcc ggtccatccg tgtatatctg cgacgaatgc      120

gtcgatttat gtaacgacat tattcgcgaa gaaattaaag aagttgctcc gcaccgtgaa      180

cgtagtgcgc tgccgacgcc gcatgaaatt cgtacccacc tggacgatta cgttatcggc      240

caggagcagg cgaaaaaagt gctggcggtg gcggtctata accactacaa gcgtctgcgt      300

aacggtgata ccagcaatgg cgtcgagtta ggcaaaagca acattctgct gattggaccg      360

accggttccg gtaaaacgct gctggcggaa acgctggcgc gcttgctgga tgtgccgttc      420

actatggcgg atgcgaccac gctgaccgaa gcgggttacg tgggtgaaga cgtcgagaat      480

atcattcaga aactgttgca gaaatgcgac tacgacgtgc aaaaagcgca gcgtgggatt      540

gtctacattg atgaaatcga taagatttcg cgtaaatcag acaatccgtc cattacccgc      600

gatgtttccg gcgaaggcgt acagcaggcg ttgctgaaac tgatcgaagg caccgtcgcc      660

gcggttccac cgcagggcgg tcgcaaacat ccgcagcagg agttcttaca ggtagatacc      720

tctaagattc tgtttatctg cggcggcgcg tttgctggtc tggataaagt gatcgctaac      780

cgtgttgaaa ccggctccgg cattggtttt ggcgcgacgg tgaaagcgaa gtccgacaaa      840

gccagcgaag gcgagctgtt gtcgcaggtt gaaccggaag atttgatcaa atttggtctg      900

attcctgagt ttatcggtcg tctgccagtg gtggcgacgc tgaacgaact cagcgaagaa      960

gcgctgattc aaatcctgaa agagccgaaa aatgcgctga ccaagcagta tcaggcgctg     1020

tttaacctgg aaggcgtcga tctggaattc cgtgacgaag cgctggacgc tatcgccagg     1080

aaagcaatgg cgcgtaaaac cggtgcccgt ggtctgcgtt ctatcgtcga agcggcgctg     1140

ctggatacca tgtacgattt gccatctatg gaagacgtcg aaaaagtggt gatcgacgag     1200

tccgttattg ccggtcagag taagccgttg ctgatttacg gcaaaccgga agcgcaggct     1260

tctggcgaat aa                                                         1272


<210>  39
<211>  1272
<212>  DNA
<213>  Salmonella Typhi Ty2


<220>
<221>  misc_feature
<223>  clpX gene

<400>  39
atgacagata aacgcaaaga tggctcgggc aaattgttgt actgctcttt ttgcggcaaa       60

agccagcatg aagtgcgcaa gctgattgcc ggtccatccg tgtatatctg cgacgaatgc      120

gtcgatttat gtaacgacat tattcgcgaa gaaattaaag aagttgctcc gcaccgtgaa      180

cgtagtgcgc tgccgacgcc gcatgaaatt cgtactcacc tggacgatta cgttatcggc      240

caggagcagg cgaaaaaagt gctggcggtg gcggtctata accactacaa gcgtctgcgt      300

aacggcgata ccagcaatgg cgtcgagtta ggcaaaagca acattctgct gactggaccg      360

accggttccg gtaaaacgct gctggcggaa acgctggcgc gcttgctgga tgtgccgttc      420

actatggcgg atgcgaccac gctgaccgaa gcgggttacg tgggggaaga cgtcgagaat      480

atcattcaga aactgttgca gaaatgcgac tacgacgtgc aaaaagcgca gcgtgggatt      540

gtctacattg atgaaatcga taagatttcg cgtaaatcag acaatccgtc cattacccgc      600

gatgtttccg gcgaaggcgt acagcaggcg ttgctgaaac tgatcgaagg caccgtcgcc      660

gcggttccac cgcagggcgg tcgcaaacat ccgcagcagg agttcttaca ggtagatacc      720

tctaagattc tgtttatctg cggcggcgcg tttgccggtc tggataaagt gatcgctaac      780

cgtgttgaaa ccggctccgg cattggtttt ggcgcgacgg tgaaagcgaa gtccgacaaa      840

gccagtgaag gcgagctgtt gtcgcaggtt gaaccggaag atttgatcaa atttggtctg      900

attcctgagt ttatcggtcg tctgccagtg gtggcgacgc tgaacgaact cagcgaagaa      960

gcgctggttc aaatcctgaa agagccgaaa aatgcgctga ccaagcagta tcaggcgctg     1020

tttaacctgg aaggcgtcga tctggaattc cgtgacgaag cgctgaacgc tatcgccagg     1080

aaagcgatgg cgcgtaaaac tggtgcccgt ggcctgcgtt ctatcgtcga agcggcgctg     1140

ctggatacca tgtacgattt gccatctatg gaagacgtcg aaaaagtggt gattgacgag     1200

tccgttattg ccggtcagag taagccgttg ctgatttacg gcaaaccgga agcgcaggct     1260

tctggcgaat aa                                                         1272


<210>  40
<211>  624
<212>  DNA
<213>  Salmonella Typhi Ty2


<220>
<221>  misc_feature
<223>  clpP gene

<400>  40
atgtcataca gcggagaacg agataatttg gcccctcata tggcgctggt gccgatggtc       60

attgaacaga cctcacgcgg tgagcgctct tttgatatct attctcgtct acttaaggaa      120

cgcgtcatat ttctgaccgg ccaggtcgaa gaccatatgg ctaacctgat cgtggcgcag      180

atgctgttcc tggaagcgga aaacccggaa aaagatatct atctgtacat taattctcct      240

ggcggcgtaa ttactgcggg gatgtccatc tatgacacca tgcagtttat taagccagac      300

gtcagcacca tttgtatggg acaggcggcc tctatggggg cgtttctgct gactgccggg      360

gcgaaaggca aacgtttctg cttgccgaac tctcgcgtca tgatccacca gccgctgggc      420

ggctatcagg gccaggcgac ggatattgaa attcacgccc gcgaaatttt gaaagtaaaa      480

gggcgcatga atgaacttat ggcgcatcat acgggtcaat ctcttgagca gattgaacgt      540

gatactgagc gcgatcgctt cctctccgcg cctgaagcgg tagagtacgg tttggttgac      600

tcaattttga cccatcgtaa ttga                                             624


<210>  41
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  41
tcacgcacac gctgcaggtt gttgttgatt tc                                     32


<210>  42
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  42
gaacttcgaa gcagctccag cacctaatga tgaaattgaa gccatgc                     47


<210>  43
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  43
gctggagctg cttcgaagtt c                                                 21


<210>  44
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  44
ctcgagttcc ggggatccgt cgacctgcag ttc                                    33


<210>  45
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  45
ggatccgcta tgaacaagtc ctgataacag aggt                                   34


<210>  46
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  chemically-synthesized oligonucleotide primer

<400>  46
ctcgagttaa cgagactcct ggaaagatgc tttcggtgaa atctgc                      46


<210>  47
<211>  2363
<212>  DNA
<213>  Salmonella enterica serovar Typhimurium

<400>  47
tcacgcacac gctgcaggtt gttgttgatt tcgttcagcg cgccttcagt ggtctgcgca       60

atggagatac cgtcgttagc gttacgggaa gcctgagtca gacctttgat gttcgcggta      120

aaacggttag caatcgcctg acctgccgca tcgtctttcg cgctgttgat acgcagaccg      180

gaagacagac gctcgatagc ggtgcccaga gcggactggg atttgttcag gttattctgg      240

gtcaacagcg acaggctgtt tgtattaatg acttgtgcca tgatcttttc cttatcaatt      300

acaacttgat gttattgggc tgttgcccac ggtttctcac cgtaaccctt gtatcggcac      360

ctgaatttcg aactttagaa aatttttcac ttcccccgat ctttttctta ggcggcgaaa      420

tagccgcttt atgcatcatt attccgcgca ttatttttgc aaaattatca ttaaactttg      480

cctccagatt gccgataacg cgcttaacta ctgtttgcaa tcaaaaagga agaaggcatg      540

gcttcaattt catcattagg tgtgggatca aacttaccgt tagaccagtt gttgacagac      600

ctgacaaaga acgaaaaagg acgcttaacg ccaattacca aacagcagag cgcgaattcg      660

gcaaagctaa ccgcctatgg cacattgaaa agcgcattag aaaaattcca gacggcaaat      720

accgcgttaa ataaagcgga tttatttaag tctaccgtgg cgtccagcac cactgaagat      780

ctcaaagtca gtactaccgc tggcgctgcc gcagggactt ataagattaa cgtaacccag      840

cttgccgccg cacagtcgct ggcgacaaaa accaccttcg cgaccaccaa agagcagttg      900

ggcgatacgt cggtcacgtc ccggacaatt aaaattgaac agccgggacg taaagagccg      960

ctggaaatta agctggataa aggcgacacc tccatggagg cgatccgtga cgccatcaat     1020

gacgccgaca gcggtatcgc cgccagtatc gttaaggtca aagagaacga attccagttg     1080

gtgcttaccg ccaatagcgg taccgacaat acgatgaaga tcacggtgga aggcgataca     1140

aaacttaacg atctactcgc ttatgacagc accaccaata ccggcaatat gcaagagctg     1200

gtgaaagcag aaaacgcgaa gctgaacgta aacggcatcg acattgagcg tcagagcaat     1260

accgtaaccg acgcccctca gggaattacg ctcaccctga ccaagaaagt gaccgacgcg     1320

accgtgacgg taacgaaaga tgataccaag gcgaaagagg cgattaaatc ctgggtggat     1380

gcctataact cgctggtgga tacctttagc tcgttaacca aatataccgc cgttgagccg     1440

ggcgaagaag ccagcgataa aaacggcgcg ctgttaggcg atagtgtggt tcgtactatc     1500

cagaccggga ttcgggcaca atttgccaat agcggcagta attctgcgtt caaaacaatg     1560

gcggaaattg gcatcaccca ggatgggact tccggcaaac tgaagattga tgatgataag     1620

ctgaccaaag tactgaaaga taacacagcc gcagcgcgtg agctgctggt aggcgatggt     1680

aaagaaacgg gtatcaccac caaaattgcc accgaagtga aaagttatct ggcggatgac     1740

ggcattattg ataatgcgca ggacaacgtt aacgccacgc tgaaaagcct gacaaaacag     1800

tacctgtccg ttagcaacag catcgatgaa accgttgccc gttacaaggc ccagtttacc     1860

caactggata ccatgatgag taagctgaat aacaccagta gttatttgac ccagcaattt     1920

acagctatga acaagtcctg ataacagagg tcaccatgta caccgcgagc ggtatcaaag     1980

cttatgcgca agtcagcgtg gaaagcgccg tgatgagcgc cagcccgcat cagttgattg     2040

aaatgttgtt tgatggcgcg aatagcgctc tggtgcgcgc tcgcctgttt ttagaacaag     2100

gcgatgttgt cgcgaaaggt gaagcgttaa gcaaagccat caatattatc gataacgggc     2160

tgaaagccgg cctcgatcag gaaaaaggcg gtgagattgc gacgaatctt tccgagctat     2220

acgactatat gattcgccgt ttactgcagg ctaatttgcg taacgacgct caggccatcg     2280

aagaagtgga agggttactc agcaatattg cagaagcctg gaagcagatt tcaccgaaag     2340

catctttcca ggagtctcgt taa                                             2363


<210>  48
<211>  2363
<212>  DNA
<213>  Salmonella enterica serovar Paratyphi A

<400>  48
tcacgcacac gctgcaggtt gttgttgatt tcgttcagcg cgccttcagt ggtctgcgca       60

atggagatac cgtcgttagc gttacgggaa gcctgagtca gacctttgat gttcgcggtg      120

aaacggttag caattgcctg acctgccgca tcgtctttcg cgctgttgat acgcagaccg      180

gaagacagac gctcgatagc ggtgcccaga gcggactggg atttgttcag gttattctgg      240

gtcaacagcg acaggctgtt tgtattaatg acttgtgcca tgatcttttc cttatcaatt      300

acaacttgat gttattgggc tgttgcccac ggtttctcac cgtaaccctt gtatcggcac      360

ctgaatttcg aactttagaa aatttttcac ttcccccgat ctttttctta ggcggcgaaa      420

tagccgcttt atgcatcatt attccgcgca ttatttttgc aaaattatca ttaaactttg      480

cctccagatt gccgataacg cgcttaacta ctgtttgcaa tcaaaaagga agaaggcatg      540

gcttcaattt catcattagg tgtgggatca aacttaccgt tagaccagtt gttgacagac      600

ctgacaaaga acgaaaaagg acgcttaacg ccaattacca aacagcagag cgcgaattcg      660

gcaaagctaa ccgcctatgg cacattgaaa agcgcattag aaaaattcca gacggcaaat      720

accgcgttaa ataaagcgga tttatttaag tctaccgtgg cgtccagcac gacagaggac      780

ctcaaagtca gtactaccgc aggcgctgcc gcagggactt ataagattag cgtaacccag      840

cttgccgccg cgcagtcgct ggcgacaaaa accaccttcg caaccaccaa agagcagttg      900

ggcgatacgt cggtcacgtc ccggacaatt aaaattgaac agccgggacg taaagagccg      960

ctggaaatta agctggataa aggcgacacc tccatggagg cgatccgtga cgccatcaat     1020

gacgccgaca gcggtatcgc cgccagtatc gttaaggtca aagagaacga attccagttg     1080

gtgcttaccg ccaatagcgg taccgacaat acgatgaaga tcacggtgga aggcgataca     1140

aaacttaacg atctactcgc ttatgacagc accaccaata ccggcaatat gcaagagctg     1200

gtgaaagcag aaaacgcgaa gctgaacgta aacggcatcg acattgagcg tcagagcaat     1260

accgtaaccg acgcccctca gggaattacg ctcaccctga cgaagaaagt gaccgacgcg     1320

accgtgacgg taacgaaaga tgataccaag gcgaaagagg cgattaaatc ctgggtggat     1380

gcctataact cgctggtgga tacctttagc tcgttaacca aatataccgc cgttgagccg     1440

ggcgaagaag ccagcgataa aaacggcgcg ctgttaggcg atagtgtggt tcgtactatc     1500

cagaccggga ttcgggcaca atttgccaat agcggcagta attctgcgtt caaaacaatg     1560

gcggaaattg gcatcaccca ggatgggact tccggcaaac tgaagattga tgatgataag     1620

ctgaccaagg tactgaaaga taacacagcc gcagcgcgtg agctgctggt aggcgatggt     1680

aaagaaacgg gtatcaccac caaaattgcc accgaagtga aaagttatct ggcggatgac     1740

ggcattattg ataatgcgca ggacaacgtt aacgccacgc tgaaaagcct gacaaaacag     1800

tacctgtccg ttagcaacag catcgatgaa accgttgccc gttacaaggc ccagtttacc     1860

caactggata ctatgatgag taagctgaat aacaccagta gttatttgac ccagcaattt     1920

acagctatga acaagtcctg ataacagagg tcaccatgta caccgcgagc ggtatcaaag     1980

cttatgcgca agtcagcgtg gaaagcgccg tgatgagcgc cagcccgcat cagttgattg     2040

aaatgttgtt tgatggcgcg aatagcgctc tggtgcgcgc tcgcctgttt ttagaacaag     2100

gcgatgttgt cgcgaaaggt gaagcgttaa gcaaagccat caatattatc gataacgggc     2160

tgaaagccgg cctcgatcag gaaaaaggcg gtgagattgc gacgaatctt tccgagctat     2220

acgactatat gattcgccgt ttactgcagg ctaatttgcg taacgacgct caggccatcg     2280

aagaagtgga agggttactc agcaatattg cagaagcctg gaagcagatt tcaccgaaag     2340

catctttcca ggagtctcgt taa                                             2363


<210>  49
<211>  2363
<212>  DNA
<213>  Salmonella enterica serovar Typhi strain Ty2

<400>  49
tcacgcacac gctgcaggtt gttgttgatt tcgttcagcg cgccttcagt ggtctgcgca       60

atggagatac cgtcgttagc gttacgggaa gcctgagtca gacctttgat gttcgcggta      120

aaacggttag caatcgcctg tcctgccgca tcgtctttcg cgctgttgat acgcagaccg      180

gaagacaaac gctcgatagc agtgcccagt gcggactggg atttgttcag gttattctgg      240

gtcaacagcg acaggctgtt tgtattaatg acttgtgcca tgatcttttc cttatcaatt      300

acaacttgat gttattgggc tgttgcccac ggtttctcac cgtaaccctt gtatcggcac      360

ctgaatttcg aactttagaa aatttttcac ttcccccgat ctttttctta ggcggcgaaa      420

tagccgcttt atgcatcatt attccgcgca ttatttttgc aaaattatca ttaaactttg      480

cctccagatt gccgataacg cgcttaacta ctgtttgcaa tcaaaaagga agaaggcatg      540

gcttcaattt catcattagg tgtgggatca aacttaccgt tagaccagtt gttgacagac      600

ctgacaaaga acgaaaaagg acgcttaacg ccaattacca aacagcagag cgcgaattcg      660

gcaaagctaa ccgcctatgg cacattgaaa agcgcattag aaaaattcca gacggcaaat      720

accgcgttaa ataaagcgga tttatttaag tctaccgtgg cgtccagcac gacagaggac      780

ctcaaagtca gtactaccgc aggcgctgcc gcagggactt ataagattag cgtaacccag      840

cttgccgccg cgcagtcgct ggcgacaaaa accaccttcg caaccaccaa agagcagttg      900

ggcgatacgt cggtcacatc ccggacaatt aaaattgaac agccgggacg taaagagccg      960

ctggaaatta agctggataa aggcgacacc tccatggagg cgatccgtga cgccattaat     1020

gacgccgaca gcggtatcgc cgccagtatc gttaaggtca aagagaacga attccagttg     1080

gtgcttaccg ccaatagcgg taccgacaat acgatgaaga tcacggtgga aggcgataca     1140

aaacttaacg atctactcgc ttatgacagc accaccaata ccggcaatat gcaagagctg     1200

gtgaaagcag aaaacgcgaa gctgaacgta aacggcatcg acattgagcg tcagagcaat     1260

accgtaaccg acgcccctca gggaattaca ctcaccctga ccaagaaagt gaccgacgcg     1320

accgtgacgg tgacgaaaga tgataccaag gcgaaagagg cgattaaatc ctgggtggat     1380

gcctataact cgctggtgga tacttttagc tcattaacta aatataccgc cgttgagccg     1440

ggcgaagaag ccagcgataa aaacggcgcg ctgttaggcg atagtgtggt tcgtgctatc     1500

cagaccggga ttcgggcaca atttgccaat agcggcagta attctgcgtt caaaacaatg     1560

gcggaaattg gcatcaccca ggatgggact tccggcaaac tgaagattga cgatgataag     1620

ctgaccaagg tactgaaaga taacacggcc gcagcgcgtg agctgctggt aggcgatggt     1680

aaagaaacgg gtatcaccac caaaattgcc accgaagtga aaagttatct ggcggatgac     1740

ggcattattg ataatgcgca ggacaacgtt aacgccacgc tgaaaagcct gacaaaacag     1800

tacctgtccg ttagcaacag catcgatgaa accgttgccc gttacaaggc ccagtttacc     1860

caactggata ccatgatgag taagctgaat aacaccagta gttatttgac ccagcaattt     1920

acagctatga acaagtcctg ataacagagg tcaccatgta caccgcgagc ggtatcaaag     1980

cttatgcgca agtcagcgtg gaaagcgccg tgatgagcgc cagcccgcat cagttgattg     2040

aaatgttgtt tgatggcgcg aatagcgctc tggtgcgcgc tcgcctgttt ttagaacaag     2100

gcgatgttgt cgcgaaaggt gaagcgttaa gcaaagccat caatattatc gataacgggc     2160

tgaaagccgg cctcgatcag gaaaaaggcg gtgagattgc gacgaatctt tccgagctat     2220

acgactatat gattcgccgt ttactgcagg ctaatttgcg taacgacgct caggccatcg     2280

aagaagtgga aaggttactc agcaatattg cagaagcctg gaagcagatt tcaccgaaag     2340

catctttcca ggagtctcgt taa                                             2363


<210>  50
<211>  2365
<212>  DNA
<213>  Salmonella enterica serovar Enteritidis

<400>  50
tcacgcacac gctgcaggtt gttgttgatt tcattcagcg caccttcagt ggtctgcgca       60

atagaaatgc cgtcgttagc gttacgggaa gcctgagtca gacctttgat attagaagtg      120

aagcggttag caatcgcctg gcctgccgca tcgtctttcg cgctgttgat acgcagacca      180

gaggacagac gctcaatagc ggaactcagt gaggactgag atttgttcag gttattctgg      240

gtcaacagcg acaggctgtt tgtattaatg acttgtgcca tgatcttttc cttatcaatt      300

acaacttgat gttattgggc tgttgcccac ggtttctcac cgtaaccctt gtatcggcac      360

ctgaatttcg aactttagaa aatttttcac ttcccccgat ctttttctta gcctgcgaaa      420

tagccgcttt atgcatcatt attccacgca ttatttttgc aaaattatca ttaaactttg      480

cttccagatt gccgataacg cgtttaacta ctgtttgcaa tcgaaaggaa gatggcatgg      540

cttcaatttc atcattaggt gtagggtcaa acttacctct ggattcactg ctgactaaac      600

tgaccaacgc tgaaaaagga cgcttaacgc cgatcacaca gcagcagagt gctaatacgg      660

cccgtctaac ggcatacggt actttaaaaa gtgcactgga gaagtttcaa acagcaaaca      720

cggcgttaaa taaagccgat ctgtttaaaa gtacgaatgt caccagcagt acagaagacc      780

tgaaagtctc gacggaagct ggggccgcac ctggaactta tgtggttagc gtaactcagt      840

tagcacaagc acaatctttg agtacagcaa ccaaaattac atctaccaaa gaagtgctgg      900

gagataccac atctgacagc cgtaccataa aaattgaaca gaaaggccgt aaagaaccac      960

ttgaaatcaa gctcactaaa gatcaaacct ctttagaggg tatccgtgac gccattaatg     1020

atgctgacag tggtatttcc gccagtatcg ttaaagttaa agaaggcgat tatcagcttg     1080

tactgaccgc agatagtggc acggataatc aaatgactat ctctgtggaa ggcgatagca     1140

aactcagcga tctgttgtcc tatgatagta gtactggcac gggcaaaatg aagcaactgg     1200

ttgctgcaga taatgctttg ttaaccgtta acggcattga tattgagcga ccgagtaata     1260

aaatcactga cgctccacaa ggcgtgacgc ttgaactaac caaagaagta aaagatgccc     1320

gtattaccgt cacaaaagat aatgaaaagg cgaccgaagc cgtcaaaggt tgggttgatg     1380

cctacaactc actgcttgat acctttagtt cattaacaaa atatacagag gttgatccag     1440

gggctgaaga acaggacaaa aacaacggtg cactacttgg agataccgtg gtgcgaacga     1500

ttcaaactgg aatccgcgct cagttcgcta atggtgcaag tacaggtaca tttaagaccc     1560

tgaatgaaat tggtattact tctgatggta ccaccggaaa actaaaaatt gatgatacca     1620

agcttaaaaa agcgctggat gaaaataccg cttctgtacg tgagctgctg gtaggtgatg     1680

gtaaagaaac ggggatcacc accaaaattg ccaccgaagt gaaaagttat ctggccgatg     1740

acggcattat tgacagcgcc caggacagta ttaacgccac gctgaaaaag ctgactaagc     1800

aatatctgac cgtcagcagt agcattgacg acaccgttgc ccgttacaag gcccagttta     1860

cccaactgga taccatgatg agtaagctga ataacaccag tacttatttg acccagcaat     1920

ttaatgctat gaacaagtcc tgataacaga ggttaccatg tacaccgcga gcggtatcaa     1980

agcttatgcg caagtcagcg tggaaagcgc cgtgatgagc gccagcccgc atcagttgat     2040

tgaaatgttg tttgatggcg cgaatagcgc tctggtgcgc gctcgcctgt ttttagaaca     2100

aggcgatgtt gtcgcgaaag gtgaagcgtt aagcaaagcc atcaatatta tcgataacgg     2160

gctgaaagcc ggcctcgatc aggaaaaagg cggtgagatt gcgacgaatc tttccgagct     2220

atacgactat atgattcgcc gtttactgca ggctaatttg cgtaacgacg ctcaggccat     2280

cgaagaagtg gaagggttac tcagcaatat tgcagaagcc tggaagcaga tttcaccgaa     2340

agcatctttc caggagtctc gttaa                                           2365


