                         SEQUENCE LISTING

<110>  The United States of America, Represented by the Secretary,
        Department of Health and Human Services
       Xu, Lai
       Rosenberg, Amy S
       Elkahloun, Abdel
       Candotti, Fabio
 
<120>  OLIGONUCLEOTIDES TARGETING HUMAN ENDOGENOUS RETROVIRUS 9 (ERV-9) 
       LONG TERMINAL REPEAT (LTR) AND METHODS OF USE

<130>  4239-81624-02

<150>  US 61/191911
<151>  2008-09-11

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  1
ctcaaggttt gtaaacacac caatcag                                           27


<210>  2
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  2
ctgattggtg tgtttacaaa ccttgag                                           27


<210>  3
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  3
cattatcaac aaaatactcc aatt                                              24


<210>  4
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  4
tctcccagcg tgcgccat                                                     18


<210>  5
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  5
tagggttaga caa                                                          13


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  6
tgacacctgt tctcactcac                                                   20


<210>  7
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  7
ccgagcctcg ccgacgagcg ccgc                                              24


<210>  8
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  8
gcggcgctcg tcggcgaggc acgg                                              24


<210>  9
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  9
ggctggccaa ggccagagcc ggctcc                                            26


<210>  10
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  10
ccgaccggtt ccggtctcgg ccgagg                                            26


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  11
gaacacatcc aaacatcaga ac                                                22


<210>  12
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  12
gttctgatgt ttggatgtgt tc                                                22


<210>  13
<211>  27
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  13
cucaagguuu guaaacacac caaucag                                           27


<210>  14
<211>  27
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  14
cugauuggug uguuuacaaa ccuugag                                           27


<210>  15
<211>  25
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  15
gccugauguu caaacaccug guaca                                             25


<210>  16
<211>  25
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  16
ccugugaagc ucauugggau gaauu                                             25


<210>  17
<211>  25
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  17
accaugauau cuggcagaug uauaa                                             25


<210>  18
<211>  1788
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (80)..(1788)
<223>  ERV-9 LTR

<400>  18
ggagccttgc tcctggaaag actaactcag ggagccagaa gttatcctcc aggttgaggt       60

gagtgaggga aagagtggtt gtgagaggtg acagcgtgct ggcagtcctc acagccctcg      120

ctcgctctcg gcgcctcctc tgcctgggtc ccactttggc ggcacttgag gagcccttca      180

gcccactgct gcactgtggg agccctttac ctgggctggc caaggccgga gccggctccc      240

tcagcttgca gggaggtgtg gagggagagg aaagagcggg aacccgggct gcacgcggca      300

cttgcgggcc agttggagtt cagagtgggc atgggcttgg cgggccccac actcggagca      360

gcccggccct gccggcccca ggcaatgagg ggcttagcac ccgggccagc ggctgcggag      420

ggtgtactgg gtcccccagc agggccagcc caccggcgct gcactcgatt tcttgctggg      480

ccttagctgc cttcccgtgg ggcagggctc gggacctgca gcccgccatg cctgagcctc      540

caaccccctg ggtgggctcc tgtacggccc gatcctcccc gatgagcgcc gccccctgct      600

ccaggcaccc agtcccatcg accacccaag ggctgaggag tgcgggtgca tggggcagga      660

ctggcaggca gctccacctg cagccccggt gcgggatcca ctgggtgaag ccagctgggc      720

ttctgagtct ggtggggaca tggagaacct ttatgtgtag ctcagggatt gtaaatacac      780

caatcagcac cctgtgctca gctcagggtt tgtgaatgca ccaatggaca ctctgtacct      840

agctactctg gtggggcctt ggagaacctt tatgtctagc tcagggattg taaatacact      900

gatcagcact ctgtatctag ctcaaggttt gtaaacacac caatcagcac ccgtgtctag      960

ctcagggttt gtgaatgcac caatctacac tctgtatcta gctactctgg tggggccttg     1020

gagaaccttt atgtctagct tcgagggatt gtaaatacac caatcggcac tctgtatctg     1080

actcaaggtt tgtaaacaca ccaatcagca ccctgtgtct agctcagggt ttgtgaatgc     1140

accaatggac actctgtatc tagctactct ggtggggact tagagaacct ttagtcaact     1200

ctgtgtctag ctaatctagt ggggacgtgg agaacctttg tgtctagctc aggaattgta     1260

aacacaccaa tcagcgccct gtcaaaacag accaggcctc taccaatcag caggatgtgg     1320

gtggggccag ataagagaat gaaagcaggc tgccggagcc agcagtggca accgctgggg     1380

tccctttcca cactgtggaa gctttgttct ttcgctcttt gcaataaatc ttgctacttc     1440

tcactctttg ggtccacact gcttttacca gctgtaacac tcaccgcaaa cgtctgcagc     1500

ttcactcctg aagccagcga gaccacgagc ccaccgggag gaacgaacaa ctccagacgc     1560

gccgccttaa gccttaagag ctgtaacact caccacgaag gtctgcagct tcactcctga     1620

gccagcgaga ccacgaaccc gccagaagga agaaactccg aacacatccg aacatcagaa     1680

ggaacaaact ctagacgcgc caccttaaga gctgtaacac tcaccacaag ggtccgcggc     1740

ttcattcttg aagtcagtga gaccaagaac ccaccaattc cggacaca                  1788


<210>  19
<211>  8137
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (2660)..(4349)
<223>  ERV-9 LTR

<400>  19
agatcctcac atgagttcag tatataattg taacagaata aaaaatcaat tatgtattca       60

agttgctagt gtcttaagag gttcacattt ttatctaact gattatcaca aaaatacttc      120

gagttacttt tcattataat tcctgactac acatgaagag actgacacgt aggtgcctta      180

cttaggtagg ttaagtaatt tatccaaaac cacacaatgt agaacctaag ctgattcggc      240

catagaaaca caatatgtgg tataaatgag acagagggat ttctctcctt cctatgctgt      300

cagatgaata ctgagataga atatttagtt catctatcac acattaaacg ggactttaca      360

tttctgtctg ttgaagattt gggtgtggga taactcaagg tatcatatcc aagggatgga      420

tgaaggcagg tgactctaac agaaagggaa aggatgttgg caaggctatg ttcatgaaag      480

tatatgtaaa atccacatta agcttctttc tgcatgcatt ggcaatgttt atgaataatg      540

tgtatgtaaa agtgtgctgt atattcaaaa gtgtttcatg tgcctagggg tgtcaaatac      600

tttgagtttg taagtatata cttctctgta atgtgtctga atatctctat ttacttgatt      660

ctcaataagt aggtatcata gtgaacatct gacaaatgtt tgaggaacaa tttagtgttt      720

acctattcac caaaatttat taaatgccta atctgtatca gatatacaat tatctggcga      780

aatctgtaat tcctaattta aacagctgtg tagcctaatt agggataaag gcatgcaaac      840

ccataatttg tgtaggttga aatgagctat agaaaaatgc agtatattta tcagaagtct      900

ttagggtcat gaaaaggaat ggtcaactga cactgccagg gactcatatg taagagataa      960

ctaatgtgaa gtgactttaa aggagaaatt agcagaagtt ttctttccat gtctcctcat     1020

catgttacaa taacggaaga gattaaaaca acaaatacat ttagacagca atgtttatcc     1080

tggttagatg ttttaatcta aatctatctt ggagtgttaa aatgcatttg ctcacctact     1140

ttaaaatata aatgaaggta ggaacctgta gatacaaaaa gttggagaaa aaaagacaat     1200

aaagatgaca aaaatctatt aatccttgat agaaaatgag aagagataaa acactggttt     1260

acataaagaa aataagatgg atagatagca gatccttata aaagtgataa tttgagaaaa     1320

aaaatactcc atattctgag tttcttcaca taaaataata caaatctgct gtggtaagtt     1380

acaaagagat agatttttat cattatataa aagatatttt aaacagagtt atacaacaaa     1440

ggaacagact atgtcatata ttctcactta tcactataaa catctcagaa aaatctgcaa     1500

aatcatttca tagcatttta aatagttagg aataatgtag aaaactgaaa cagttctaag     1560

tttcccacaa acttagagtc tcaaatgttg cattacctaa cttacctgca aatattttat     1620

acaaatttgc acatgctact ctagtcaaaa atatatgtac attatgggta ttttctgtgt     1680

gtaacttggt tctagttgct tctttcagaa atagcctcta tttttgattt acctgataaa     1740

atcacattcc tctccaaagc cttctaaata cttccagact aactactttt tagtacatct     1800

aagaagaaaa gagttttgtc tcttatccac ctctgagtca aaaagcagca tgtccatcaa     1860

ttggtacata gttcccacag ccccacttag ctctggattg gagttctact tggcattgtt     1920

tgcaactaca tggacgtaaa atgcatggat tctcttgaaa aaatgtttct gccatgatgt     1980

tctctgaaag agactaacct tccctcgctt tgcagagaaa gactcgtgta atccttgaca     2040

atgtcatctc atctatttat tcccatgtct acccatatgt gaccttcatg tctttgtctc     2100

aagcccctac atcctcaatc tacacactag gatagtataa aagtaatagt aataatagta     2160

gtaatagtaa taacaataca atgattatgg cttatactat acacaagaca ctgttgatat     2220

attatttcat ttagtattca cagtaactct gtgcctcaag tactattgta atacccttta     2280

agaggaggaa actgaggcac agggccctaa agtaatattc caagatgaag tggctactaa     2340

ctgacagagg gcataattca actcatgata tttggctcta gaatacatgc tctgaatcat     2400

tatacaataa taattcatga ggaaacattt tttaaagcct aagttatttg ctctgaaata     2460

agacataatt tggggtgaga aagcttagat tccatgaagt attacagcat ttggtagtct     2520

ttttgcactc caggtcttat ttttactgct taaacataat aaaacatatg gttcagtatg     2580

cctttgattt tacaataata ttcctgttat ttttggaagc acagggtgtg ggataatgct     2640

aattactagt gattagtatt gagaggtgac agcgtgctgg cagtcctcac agccctcgct     2700

cgctcttggc gcctcctctg cctgggctcc cacattggtg gcacttgagg agcccttcag     2760

ccggccgctg cactgtggga gcccttttct gggctggcca aggccagagc cggctccctc     2820

agcttgccag gaggtgtgga gggacagacg cgggcaggaa ccgggctgtg cgccgtgctt     2880

gagggagttc cgggtgggca tgggctccga ggaccccgca ctcggagccg ccagccggcc     2940

ccaccggccg cgggcagtga ggggcttagc acctgggcca gcagctgctg tgctcaattc     3000

ctcgccgggc cttagctgcc ttcctgcggg gcagggctcg ggacctgcag cgcgccatgc     3060

ctgagcctcc ccaccttcat gggctcctgt gcggcccgag cctcgccgac gagcgccgcc     3120

ccctgctcca gggcacccag tcccatcgac cacccaaggg ctgaagagtg cgggcgccag     3180

caaggggact ggcaggcagc tccccctgca gcccaggtgc gggatccact gggtgaagcc     3240

ggctaggtcc tgagtttgct ggggatgcga agaaccctta tgtctagata agggattgta     3300

aatacaccaa ttggcactct gtatctagct caaggtttgt aaacacacca atcagcaccc     3360

tgtgtctagc tcagggtttg tgaatgcacc aatcaacact ctatctagct actctggtgg     3420

ggccttggag aacctttatg tctagctcag ggattgtaaa tacaccaatc ggcagtctgt     3480

atctagctca aggtttgtaa acacaccaat cagcaccctg tgtctagctc agggtttgtg     3540

aatgcaccaa tcaacactct gtatctagct actctggtgg ggacgtggag aacctttatg     3600

tctagctcag ggattgtaaa tacaccactc ggcagtctgt atctagctca aggtttgtaa     3660

acacaccaat cagcaccctg tgtctagctc agggtttgtg aatgcaccaa tcaacactct     3720

gtatctagct actctggtgg gacttggaga acctttgtgt ggacactctg tatctagcta     3780

atctggtggg gacgtggaga acctttgtgt ctagctcatg gattgtaaat gcaccaatca     3840

gtgccctgtc aaaacagacc actgggctct ctaccaatca gcaggatgtg ggtggggcca     3900

gataagagaa taaaagcagg ctgcccgagc cagcagtggc aacccgctcg ggtccccttc     3960

cacactgtgg aagctttgtt ctttcgctct ttgcaataaa tcttgctgct gctcactgtt     4020

tgggtctaca ctgcctttat gagctgtaac gctcaccgcg aaggtctgca gcttcactct     4080

tgaagccagc gagaccacga acccaccgga ggaacgaaca actccagagg cgccgcttaa     4140

gagctggaac gttcactgtg aaggtctgca gcttcactcc tgagccagcg agaccacgaa     4200

cccatcagaa ggaagaactc gaacacatcc aaacatcaga acgaacaact ccacacacgc     4260

agcctttaag aactgtaaca ctcaccacga gggtccccgg cttcattctt gaagtcagtg     4320

aaaccaagaa cccaccaatt ccggacacag tatgtcagaa acaatatgag tcactaaatc     4380

aatatacttc tcaacaattt ccaacagccc ttgcaattaa cttggccatg tgactggttg     4440

tgactaaaat aatgtggaga taataatgtg ttactcccta aggcagagtg cccttctatc     4500

attctctttc ccttcctcta tgtggcagaa agtaaaagat tctgaaatga taaagtcaat     4560

cacaggaagg cacctggact cctggcccac tgcttggagg agagcactca ggaccatgaa     4620

catctgactg tgacgtagca ataaagaaac ccacgtttca tatgaaactg cttaaaatta     4680

atggcacaag tcatgttttt gatgttgcac atttgtcttt atttgtggct tgttttgctt     4740

ccacatcaat ccactcaagg cctacattct gctataatgc aatttcaagt tctttacagg     4800

ccgagaaaaa tgaatctgaa ttcctgacct ccaaaagtga tcaagatatt tttagttcag     4860

gctccaaaat tttctcattt tcataggttt tcctcgattg atcattattc atgatttgca     4920

aggaatcatt caatgttttc taaatctatt actgcatcct gacacatatg acattttaac     4980

tatgttccag atttttgaat gaagagtgta aattttaaat gttttcacca caaaaaataa     5040

gtatgtgaag tggtggattt gttaattagc cttatttaac catttaatat tgtacacgta     5100

caccaaagca tcatgttgta ccccatgaat acacacaatt attatttgtc aatttaaaat     5160

gaaataataa aaaataacaa agcattagcc tctgcattgc ctttaccggt catctcacgg     5220

tgactaacgc aaaaacgttc tatttcatcc ttacaaacat ccctatcttt gatgcctctt     5280

tgtctagatc tctatcccct cctgttttct ctacgttatt tatatgggta tcatcacatc     5340

ctggacaaca tcaggacaga tatccctcac caagccaatg ttcctctcta tgttggctca     5400

aatgtccttg aactttcctt tcaccaccct ttccacagtc aaaaggatat tgtagtttaa     5460

tgcctcagag ttcagctttt aagcttctga caaattattc ttcctcttta ggttctcctt     5520

tatggaatct tctgtactga tggccatgtc ctttaactac tatgtagata tctgctacta     5580

cctgtattat gcctctacct ttattagcag agttatctgt actgttggca tgacaatcat     5640

ttgttaatat gacttgcctt tcctttttct gctattcttg atcaaatggc tcctctttct     5700

tgctcctctc atttctcctg ccttcacttg gacgtgcttc acgtagtctg tgcttatgac     5760

tggattaaaa attgatatgg acttatccta atgttgttcg tcataatatg ggttttatgg     5820

tccattatta tttcctatgc attgatctgg agaaggcttc aatcctttta ctctttgtgg     5880

aaaatatctg taaaccttct ggttcactct gctatagcaa gtttcagttt aggctagtaa     5940

gcatgaggat gcctccttct ctgatttttc ccacagtctg ttggtcacag aataacctga     6000

gtgattactg atgaaagagt gagaatgtta ttgatagtca caatgacaaa aaacaaacaa     6060

ctacagtcaa aatgtttctc tttttattag tggattatat ttcctgacct atatctggca     6120

ggactcttta gagaggtagc tgaagctgct gttatgacca ctagagggaa gaagatacct     6180

gtggagctaa tggtccaaga tggtggagcc ccaagcaagg aagttgttaa ggagcccttt     6240

tgattgaagg tgggtgcccc caccttacag ggacaggaca tctggatact cctcccagtt     6300

tctccagttt ccctttttcc taatatatct cctgataaat gtctatactc acttccccat     6360

ttctaataat aaagcaaagg ctagttagta agacatcacc ttgcattttg aaaatgccat     6420

agctttcaaa attatttcat acatcggtct ttctttattt caagagtcca gaaatggcaa     6480

cattaccttt gattcaatgt aatggaaaga gctctttcaa gagacagaga aaagaataat     6540

ttaatttctt tccccacacc tccttccctg tctcttaccc tatcttcctt ccttctaccc     6600

tccccatttc tctctctcat ttctcagaag tatattttga aaggattcat agcagacagc     6660

taaggctggt tttttctaag tgaagaagtg atattgagaa ggtagggttg catgagccct     6720

ttcagttttt tagtttatat acatctgtat tgttagaatg ttttataata taaataaaat     6780

tatttctcag ttatatacta gctctgtaac ctgtggatat ttccttaagt attacaagct     6840

atacttaact cacttggaaa actcaaataa atacctgctt catagttatt aataaggatt     6900

aagtgagata atgcccataa gattcctatt aataacagat aaatacatac acacacacac     6960

acattgaaag gattcttact ttgtgctagg aactataata agttcattga tgcattatat     7020

attgaagttc taatttcaac actagaaggc aggtattatc taaatttcat actggatacc     7080

tccaaactca caaagataat taaattgcct tttgtcatat atttattcaa aagggtaaac     7140

tcaaactatg gcttgtctaa ttttatatat caccctactg aacatgaccc tattgtgata     7200

ttttataaaa ttattctcaa gttattatga ggatgttgaa agacagagag gatggggtgc     7260

tatgccccaa atcagcctca caattaagct aagcagctaa gagtcttgca gggtagtgta     7320

gggaccacag ggttaagggg gcagtagaat tatactccca ctttagtttc atttcaaaca     7380

atccatacac acacagccct gagcacttac aaattatact acgctctata ctttttgttt     7440

aaatgtataa ataagtggat gaaagaatag atagatagat agacagatag atgatagata     7500

gaataaatgc ttgccttcat agctgtctcc ctaccttgtt caaaatgttc ctgtccagac     7560

caaagtacct tgccttcact taagtaatca attcctaggt tatattctga tgtcaaagga     7620

agtcaaaaga tgtgaaaaac aatttctgac ccacaactca tgctttgtag atgactagat     7680

caaaaaattt cagccatatc ttaacagtga gtgaacagga aatctcctct tttccctaca     7740

tctgagatcc cagcttctaa gaccttcaat tctcactctt gatgcaacag accttggaag     7800

catacaggag agctgaactt ggtcaacaaa ggagaaaagt ttgttggcct ccaaaggcac     7860

agctcaaact tttcaagcct tctctaatct taaaggtaaa caagggtctc atttctttga     7920

gaacttcagg gaaaatagac aaggacttgc ctggtgcttt tggtagggga gcttgcactt     7980

tcccccttct ggaggaaata tttatcccca ggtagttccc tttttgcacc agtggttctt     8040

tgaagagact tccacctggg aacagttaaa cagcaactac agggccttga actgcacact     8100

ttcagtccgg tcctcacagt tgaaaagacc taagctt                              8137


<210>  20
<211>  982
<212>  DNA
<213>  Homo sapiens

<400>  20
ttatgtctag ataagggatt gtaaatacac caattggcac tctgtatcta gctcaaggtt       60

tgtaaacaca ccaatcagca ccctgtgtct agctcagggt ttgtgaatgc accaatcaac      120

actctatcta gctactctgg tggggccttg gagaaccttt atgtctagct cagggattgt      180

aaatacacca atcggcagtc tgtatctagc tcaaggtttg taaacacacc aatcagcacc      240

ctgtgtctag ctcagggttt gtgaatgcac caatcaacac tctgtatcta gctactctgg      300

tggggacgtg gagaaccttt atgtctagct cagggattgt aaatacacca ctcggcagtc      360

tgtatctagc tcaaggtttg taaacacacc aatcagcacc ctgtgtctag ctcatggatt      420

gtaaatgcac caatcagtgc cctgtcaaaa cagaccactg ggctctacca atcagcagga      480

tgtgggtggg gccagataag agaataaaag caggctgccc gagccagcag tggcaacccg      540

ctcgggtccc cttccacact gtggaagctt tgttctttcg ctctttgcaa taaatcttgc      600

tgctgctcac tgtttgggtc tacactgcct ttatgagctg taacgctcac cgcgaaggtc      660

tgcagcttca ctcttgaagc cagcgagacc acgaacccac cgggaggaac gaacaactcc      720

agaggcgccg ccttaagagc tggaacgttc actgtgaagg tctgcagctt cactcctgag      780

ccagcgagac cacgaaccca tcagaaggaa gaaactccga acacatccaa acatcagaac      840

gaacaaactc cacacacgca gcctttaaga actgtaacac tcaccacgag ggtccccggc      900

ttcattcttg aagtcagtga aaccaagaac ccaccaattc cggacacagt atgtcagaaa      960

caatatgagt cactaaatca at                                               982


<210>  21
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  21
cctgagtttg ctggggatgc gaa                                               23


<210>  22
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  22
accctgagct agacacaggg tgc                                               23


