                               SEQUENCE LISTING

<110> BECTON, DICKINSON AND COMPANY
 
<120> ASSAY FOR CHLAMYDIA TRACHOMATIS BY AMPLIFICATION AND DETECTION 
      OF CHLAMYDIA TRACHOMATIS CYTOTOXIN GENE

<130> BECTON 3.4-022

<140>
<141>

<150> 61/190,081
<151> 2008-08-26

<160> 24    

<170> PatentIn version 3.5

<210> 1
<211> 5130
<212> DNA
<213> Chlamydia trachomatis

<400> 1
atgcccgttc cgaatccgat tgttgctcaa gagaaaattc ctcacaggtg tttcaacctg       60

aaactgttcc cagtaataga agtacagaga caactcctca aaatattgaa gtttataatg      120

atcgcaattt cactaatcac accacggaag atgtgattag aatcggggag aggttacaac      180

atcagtttta taatatgacg gaagagtctc gagttccttt tactacatct ccatcgcatc      240

atacaggaaa ttggaaaaca gcatttcttt ataacttatc tcaggtggtc gcacatattt      300

tcccctcgac ggtgcaaccg attcgagtga agcctacaag gatgcctcct tctcctacac      360

ctcctccaga aggaacgaca acggcagaga cttctacttc agagaataag gtcactacaa      420

tctctaaaga acaggaagta acgacaaaac ctcctgtatt cgtgaacaaa acctctcctc      480

gtaagagaaa gacgaagttt attacacggc cagtgaacgt tcgtacgtac tctgttcaga      540

ggagggggta aaaacgattt ctgctagtgc agttcctcct acagcagctg ttttatcgag      600

aaaaaagcgt gctatagaag agaagaagga ggaagcttct tctggaaaga tagaaaatct      660

tgatgctagc aaatacgatc ttactcccaa gaacatagaa gaaaaactag gaattactcc      720

tgaacagaaa tctactgtta aaggcctatt aaataaactg aaaaaggtca ttagtgctta      780

caactccatg ccagataaaa attcggaagc aggacagaat tccttgattc aacaaggaaa      840

atacgtcgat gccattcaga agaagcttcc agcatcatcg caggctcagc ctaaacaggc      900

aaaagctaag gaacagaaag ccgaagaaaa acctaagacg actccgattg aaggtgttct      960

tgaaaccatc aaaacagaat ttaaaggcca tcgtgtacct gttgagaaaa tcatccatgg     1020

aatatggatc gcaggagcgc ctccggatgg tatcgaagat tatatgcaag tctttttaga     1080

tacttatgaa ggttttgact tctacttctg ggtagatgag aatgcttatg cagcagctaa     1140

attttctagc attttgaaga aggtcgcttt cgatgcggct attcaagatc tacgatctgc     1200

cacagatgag tctacaaagg cctttgttaa agactacgat gaattaaaac agaaatatga     1260

aaagaaagtt gcggagacga cttctcaagc agaaaaagac caatatctca aagatctaaa     1320

ggatctttta gagaaattta caaaaatcag tgatgagatt cgtggaaaat ttgatcggct     1380

gtttcttaag aatgtgattg ttgctcagga cggattcttt aatttctgct tgctgaaagg     1440

cctcggcaat atcaatgacg aaacgcgtgc agagtattta gagaaagaac tcaaacttcc     1500

tactgaggag atcgaacagt ataaaaagct taaagagacg aacaaagaga agatagccgc     1560

tattgtaaaa caactaaacg agaaacttgg atcggatcgg gtaaaaatca aagacattaa     1620

agagctgcaa tctatgaagc aagctcgaaa tgtctacaat tatgatgcgt taattggtca     1680

cgtaggagat tggtcagatc gacgagtccg agatcgttta ggatatggat atcgatttag     1740

tcctgatgga gctttagcta gaggtcatgc caatagtaaa tggccacggg agttgcccca     1800

gatccctaga gggatttatg aaaccatcta tttgggataa gggatgcagt ataaggtata     1860

tacagagatt gtatatctct ctaataagat tatatggcga gatgcggtca tggatccgac     1920

ttcccgctat tacactcctc ccttagttga gcaaggcaag agttcaactg ttgtagcagg     1980

gaatactcct ttaacagtga tagctctccg tttgttagat gaagactctc ctgctagagt     2040

taatcagacg attgcttaca aagattataa gattaacttg gtaggaggga aaggaggatt     2100

aacagttcaa ataggcggtg ggggaatcta taacatcacg gggaatcctt cggcccaaaa     2160

tatgatctct ttccgagcga taccgcaacc tttaggcgtg cattttaatt tgtctaacca     2220

tgccatgcaa gaggttcctc tagttcgtcc aaatggaact aggattgatg cgttaaaaat     2280

tcttcaaaaa ggattccgta ttatcacagg atctgctgga ggatacgatg tattagttgg     2340

agatagggat acgcgctttt atgtgagccc tggaggatgg aagattgttt cagggacagg     2400

aaggaactgg tatcatatcc caacgcttca aggaagatca gatatcattc tcgcagacaa     2460

ttctacagag caccatctat tcatggaggc aacctattat tcgtggcaat ctttgggtac     2520

gaatctaacg cttattccta gagaaaccca gaagaatagc tcgaactcaa taggggtatt     2580

tgtttccaat ttcgataaca gctctttctt tgaccgctgg atagataaat ttactgtaaa     2640

attatcggat gggatcactc tgtttgcttt aagcaaatct tctcaagagg ccaacgtttc     2700

cgaaccggtt actaatacaa ctgtaacttt gggggtgagc tcagtagatc aaactatgtg     2760

gctaagaaat ttccctgaag aacctactta cgtggagact atttttgaat ggttgaaaaa     2820

actgcgttgg tggttggcgc cagaagttac tgttttgcaa cctgaaggaa cggtaaattt     2880

ctatcgtcgt aataatacct taatttatca tccgcaacca ggatacttta cacgtataga     2940

tggatctgta ggagatacgt acatattttc tgaatctcct agcgccaatt tatctacagt     3000

agagctgacg ttagcagaag atttgaatac cccgaaaacc gtggatttga gttcattagt     3060

tcctactctt gtgcgaggaa gaatgacgaa tcatactgta aacgggtctt ctatcgactt     3120

agaaatctct tctcctcgtt acaaccttcc tttacaagtg aattggaatc cgcattattt     3180

acctagagga acccgattcg atcttattcc taatcactct ccaacattag gggaattata     3240

ctacattgaa tgcgaatgcc tctatatggc ataccctttt cagtaatagt atattaattc     3300

ctgaaagact agttggtatg atgagtttga acaataccgt gactctcatg ctgcgtaagt     3360

tcaaaagaaa tgatgaacat attttaggag tagaaaacag aggaagcatc aatcttaagg     3420

tagatggaga catgtatgct gggcatatta aaggtgctat ggagcatcgg cactggcatg     3480

agttcccaca tcttttatcg aaatttgata tcaccgtcca tgcaaggacg attaaatatt     3540

tcgcattcaa aggaagtcta gcaacaaacg atacgattct gttccggagc tattttgaac     3600

cagcgatttt agatacctat aacagtacac cggttgattt acatgtctgg tctcaatacg     3660

atcagattcg tatacataag gcaaccttga agctagaagg tttccaagta tacaatgtaa     3720

ctactgcaac ggatgccttg aatagacaac tgatgtacgc gcaaaacttc gtgaacatcc     3780

gtggaagaga tctttctata aaaccatttt atattcgaac aggatctgga attggtgcta     3840

tccaattagt gttcaaagat ctattcgtaa atgatttaag tgatattacg gataggactt     3900

tcgaaaaaga agccaaacct ctgttagcta aaaaacctca ttcacttata gatcctacat     3960

ataaagagtt cctgaaattc ttcttaggag aaacctctta tgatttaaca caatatattc     4020

aagaatttgg cgatacctcc catatcgtaa aaatgattcg ggatccaaaa acacatgaat     4080

tgcaggagcc tgctcatcta ccagtaatcc tgttgttctt acatatacaa ttgatcctaa     4140

ggaagaagag gttcggcagg acaaattgtt gttcttagac aagttgatga aagagtatcg     4200

cttccctcaa cctacacaag ccgaaagtta ttactacatc gatccagtca gcggagattt     4260

atatatcact cgtgtagctc tcatgcgacc aacagaaaaa gcctttttat taagactagc     4320

tcagttcaaa tcgagatggt tagatttcca aaatatcttt atttctggag tgcgtgcatc     4380

tactggcaca tcgaagagct tagaagcttc aggaactgga gtgatgttta tcggtccaga     4440

aattcgacac attgaattag acttcttccg acacatagca ggacgagcat taccagagag     4500

agtttcatca cgatccagcg ttgtattccc aacgaatgat caagttgtat tgtataatcc     4560

agccttagca atgaaattct atacttacac tgcattcatg ctttggaatc ttcgggatag     4620

agcaagagga gagtcgaaga gagcgaaggc ttatgataat taccttctcg aagcttgtat     4680

gtccttggat acagctggga agcctcactg gaaaatccct gaaggattct tgcaatttgc     4740

atttgcttcc gttcttgggt agagcattgg gtgaaaaagt ctataagaag aggatctctc     4800

attcagctcc ctgcacgaag cattcaggtg tcgttgatta caacgcaaac aggatacttt     4860

gctcggcaga acagacgagg agggttccaa gtcttctata gtatttacgg attagaaggg     4920

aaagtgcaac cacaccaagc tcctggagat atgctatgcg acattactga agacgtagtg     4980

ttaacggtca aagatatgga tgaaagcgac taccaacaga aacgaattta tgtggtttta     5040

gatttagcga cggaagaaga gcgtaggttg cgagcagata agaacgtgat ccttattcct     5100

agaggggaga attctaagaa aagaaaataa                                      5130


<210> 2
<211> 16
<212> DNA
<213> Chlamydia trachomatis

<400> 2
ccaaggttca gaagat                                                       16


<210> 3
<211> 15
<212> DNA
<213> Chlamydia trachomatis

<400> 3
ggtgtggttc gagga                                                        15


<210> 4
<211> 17
<212> DNA
<213> Chlamydia trachomatis

<400> 4
gcgatttaga ttttggt                                                      17


<210> 5
<211> 17
<212> DNA
<213> Chlamydia trachomatis

<400> 5
aaactggcaa ttgtgat                                                      17


<210> 6
<211> 20
<212> DNA
<213> Chlamydia trachomatis

<400> 6
tacgatacgc tgtaatgact                                                   20


<210> 7
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 7
ggttccaagt cttcta                                                       16


<210> 8
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 8
cgctaaatct aaaacca                                                      17


<210> 9
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 9
ccacaccaag ctcct                                                        15


<210> 10
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 10
tttgaccgtt aacacta                                                      17


<210> 11
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic probe

<400> 11
atgctatgcg acattactga                                                   20


<210> 12
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 12
gcaaccacac caagctct                                                     18


<210> 13
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 13
aatctttgac cgttaacact ac                                                22


<210> 14
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic probe

<400> 14
gagatatgct atgcgacatt actga                                             25


<210> 15
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 15
caggatactt tgctcggcag                                                   20


<210> 16
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 16
cactttccct tctaatccgt a                                                 21


<210> 17
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic probe

<400> 17
gagggttcca agtcttctat agtat                                             25


<210> 18
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 18
tgaaagcgac taccaacaga a                                                 21


<210> 19
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 19
ataaggatca cgttcttatc tg                                                22


<210> 20
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic probe

<400> 20
tagatttagc gacggaagaa gagcg                                             25


<210> 21
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 21
cgattccgct ccagacttct cgggccacac caagctcct                              39


<210> 22
<211> 41
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic primer

<400> 22
accgcatcga atgactgtct cgggtttgac cgttaacact a                           41


<210> 23
<211> 29
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic probe


<220>
<221> modified_base
<222> (9)..(9)
<223> dT-Dabcyl

<400> 23
tccccgagta tgctatgcga cattactga                                         29


<210> 24
<211> 327
<212> DNA
<213> Chlamydia trachomatis

<400> 24
attcagctcc ctgcacgaag cattcaggtg tcgttgatta caacgcaaac aggatacttt       60

gctcggcaga acagacgagg agggttccaa gtcttctata gtatttacgg attagaaggg      120

aaagtgcaac cacaccaagc tctggagata tgctatgcga cattactgaa gacgtagtgt      180

taacggtcaa agattggatg aaagcgacta ccaacagaac gaatttatgt ggttttagat      240

ttagcgacgg aagaagagcg taggttgcga gcagataaga acgtgatcct tattcctaga      300

ggggagaatt ctaagaaaag aaaataa                                          327


