                         SEQUENCE LISTING

<110>  HURT, Richard
       WHITAKER, Tom J.
 
<120>  NUCLEIC ACID SEQUENCE DETECTION BY VOID EXTENSION LIGATION 
       AMPLIFICATION

<130>  2959-0110PWO1

<150>  US 61/085,929
<151>  2008-08-04

<160>  31    

<170>  PatentIn version 3.5

<210>  1
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VOID1 = 184

<400>  1
tggtccggcg gcgccgcc                                                     18


<210>  2
<211>  80
<212>  DNA
<213>  M. tuberculosis


<220>
<221>  misc_feature
<223>  Shown in Figures 1, 2, and 5

<400>  2
cagcagaaag gccacgtctt cgaaggcggc ctatggtccg gcggcgccgc caatgctgcc       60

aacggcgccc tgggtgcaaa                                                   80


<210>  3
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER1(ts)

<400>  3
ccgttggcag catt                                                         14


<210>  4
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE1(ts)

<400>  4
taggccgcct tcgaagacg                                                    19


<210>  5
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: primer

<400>  5
gtaattctga gcactgtcgc                                                   20


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: primer

<400>  6
ctgcctggac aacattgctt                                                   20


<210>  7
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: TAF(c)

<400>  7
gcgacagtgc tcagaattac                                                   20


<210>  8
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE1

<400>  8
taggccgcct tcgaagacgg cgacagtgct cagaattac                              39


<210>  9
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER1

<400>  9
ctgcctggac aacattgccc gttggcagca tt                                     32


<210>  10
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VE primer

<400>  10
gttggcagca ttggc                                                        15


<210>  11
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER2

<400>  11
ctgcctggac aacattgctt gttggcagca ttggc                                  35


<210>  12
<211>  90
<212>  DNA
<213>  M. tuberculosis


<220>
<221>  misc_feature
<223>  Shown in Figures 3 and 4

<400>  12
cgatcacccc gggaaccccg atcaccccgg gaaccccaat cacacccatc ccgggagcgc       60

cggtaactcc gatcacacca acgcccggca                                        90


<210>  13
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER3(ts)

<400>  13
gagttaccgg cgctccc                                                      17


<210>  14
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE3(ts)

<400>  14
cccggggtga tcggggttcc c                                                 21


<210>  15
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: Zip code sequence

<400>  15
aaggccttaa ggccttaagg a                                                 21


<210>  16
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER3

<400>  16
ctgcctggac aacattgctt aaggccttaa ggccttaagg agagttaccg gcgctccc         58


<210>  17
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE3(i)

<400>  17
cccggggtga tcggggttcc cgcgacagtg ctcagaatta c                           41


<210>  18
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE3

<400>  18
cccggggtga tcggggttcc caaagcgaca gtgctcagaa ttac                        44



<210>  19
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: Ligation template

<400>  19
tcgtcgtcgt cgtcgtcgtc gtcg                                              24


<210>  20
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: Complement to ligation template

<400>  20
cgacgacgac ga                                                           12


<210>  21
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER4

<400>  21
cgacgacgac gagagttacc ggcgctccc                                         29


<210>  22
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE4

<400>  22
cccggggtga tcggggttcc ccgacgacga cga                                    33


<210>  23
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: Ligation coupler

<400>  23
tgtgtgtgtg tg                                                           12


<210>  24
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PROBE5 (Fig. 5)

<400>  24
taggccgcct tcgaagacgg cgacagtgct cagaattacc ggcctatggt                  50


<210>  25
<211>  89
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VEL product (Fig. 1)

<400>  25
ctgcctggac aacattgccc gttggcagca ttggcggcgc cgccggacca taggccgcct       60

tcgaagacgg cgacagtgct cagaattac                                         89


<210>  26
<211>  89
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VEL product (Fig. 2)

<400>  26
ctgcctggac aacattgctt gttggcagca ttggcggcgc cgccggacca taggccgcct       60

tcgaagacgg cgacagtgct cagaattac                                         89


<210>  27
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide 

<400>  27
cggcctatgg t                                                            11


<210>  28
<211>  124
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VEL product (Fig. 3)

<400>  28
ctgcctggac aacattgctt aaggccttaa ggccttaagg agagttaccg gcgctcccgt       60

tatgggtgtg attggggttc ccggggtgat cggggttccc aaaggcgaca gtgctcagaa      120

ttac                                                                   124


<210>  29
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: PRIMER5 (Fig. 5)

<400>  29
cgccaatctg cctggacaac attgcttgtt ggcagcatt                              39


<210>  30
<211>  107
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: Figure 5

<400>  30
cgccaatctg cctggacaac attgcttgtt ggcagcattg gcggcgccgc cggaccatag       60

gccgccttcg aagacggcga cagtgctcag aattaccggc ctatggt                    107


<210>  31
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide: VEL product (Fig. 4)

<400>  31
cgacgacgac gagttaccgg cgctcccgtt atgggtgtga ttggggttcc cggggtgatc       60

ggggttcccc gacgacgacg a                                                 81


