Table 6.1. SNP markers found to be associated with Crohn's Disease in Fine Mapping studies in the
German Population. Individual SNP markers genotyped in the fine mapping study are presented in each
row of the table. The corresponding region ID and chromosome is presented as identified in Table 1
(columns 1 and 2). The coordinate of the SNP according to the NCBI genome assembly build 36 is
indicated in column 3. The RS# column corresponds to the NCBI dbSNP identifier for the SNP (column
4). The Seq ID is the unique numerical identifier for this SNP in the sequence listing for this
patent, and is indicated in column 5. Column 6, labeled Flanking Sequence, corresponds to 21 bp of
nucleotide sequence centered at the SNP, which is coded using the standard degenerate naming
system. The remainder of the table lists -log10 p values for association of the indicated haplotype
centered at the corresponding SNP with the disease as described in the text, using LDSTATS V4.
Values for the association of single markers, as well as a 3 marker haplotype window are shown for
LDSTATS V4 analysis (see text for explanation of statistical calculations).

                                                                             LDSTATV4        LDSTATV4   
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        
203         3     126562870      10048926   4762     CCATTCCTTCYGCAACATCTA   1.386           -          
203         3     126604771      2076725    4764     TCGAAGAAGARCTCAGATACC   0.721           4.572      
203         3     126611367      10934713   4765     TTGGTTCCTGYGTCATTTTGA   0.688           -          
