                               SEQUENCE LISTING                               

<110> AGILENT TECHNOLOGIES, INC.

<120> ANALYTE DETECTION ASSAYS

<130> 10070698-02-WO

<140>
<141>

<150> 11/897,892
<151> 2007-08-31

<150> 60/959,908
<151> 2007-07-17

<160> 28                            

<170> PatentIn Ver. 3.3

<210> 1
<211> 605
<212> PRT
<213> Escherichia coli

<220>
<221> MOD_RES
<222> (1)
<223> Met or Val

<220>
<221> MOD_RES
<222> (32)
<223> Ala or Asp

<220>
<221> MOD_RES
<222> (34)
<223> Ala or Glu

<400> 1
Xaa Ile Ser Tyr Asp Asn Tyr Val Thr Ile Leu Asp Glu Glu Thr Leu  
  1               5                  10                  15    

Lys Ala Trp Ile Ala Lys Leu Glu Lys Ala Pro Val Phe Ala Phe Xaa  
             20                  25                  30        

Thr Xaa Thr Asp Ser Leu Asp Asn Ile Ser Ala Asn Leu Val Gly Leu  
         35                  40                  45            

Ser Phe Ala Ile Glu Pro Gly Val Ala Ala Tyr Ile Pro Val Ala His  
     50                  55                  60                

Asp Tyr Leu Asp Ala Pro Asp Gln Ile Ser Arg Glu Arg Ala Leu Glu  
 65                  70                  75                  80

Leu Leu Lys Pro Leu Leu Glu Asp Glu Lys Ala Leu Lys Val Gly Gln  
                 85                  90                  95    

Asn Leu Lys Tyr Asp Arg Gly Ile Leu Ala Asn Tyr Gly Ile Glu Leu  
            100                 105                 110        

Arg Gly Ile Ala Phe Asp Thr Met Leu Glu Ser Tyr Ile Leu Asn Ser  
        115                 120                 125            

Val Ala Gly Arg His Asp Met Asp Ser Leu Ala Glu Arg Trp Leu Lys  
    130                 135                 140                

His Lys Thr Ile Thr Phe Glu Glu Ile Ala Gly Lys Gly Lys Asn Gln  
145                 150                 155                 160

Leu Thr Phe Asn Gln Ile Ala Leu Glu Glu Ala Gly Arg Tyr Ala Ala  
                165                 170                 175    

Glu Asp Ala Asp Val Thr Leu Gln Leu His Leu Lys Met Trp Pro Asp  
            180                 185                 190        

Leu Gln Lys His Lys Gly Pro Leu Asn Val Phe Glu Asn Ile Glu Met  
        195                 200                 205            

Pro Leu Val Pro Val Leu Ser Arg Ile Glu Arg Asn Gly Val Lys Ile  
    210                 215                 220                

Asp Pro Lys Val Leu His Asn His Ser Glu Glu Leu Thr Leu Arg Leu  
225                 230                 235                 240

Ala Glu Leu Glu Lys Lys Ala His Glu Ile Ala Gly Glu Glu Phe Asn  
                245                 250                 255    

Leu Ser Ser Thr Lys Gln Leu Gln Thr Ile Leu Phe Glu Lys Gln Gly  
            260                 265                 270        

Ile Lys Pro Leu Lys Lys Thr Pro Gly Gly Ala Pro Ser Thr Ser Glu  
        275                 280                 285            

Glu Val Leu Glu Glu Leu Ala Leu Asp Tyr Pro Leu Pro Lys Val Ile  
    290                 295                 300                

Leu Glu Tyr Arg Gly Leu Ala Lys Leu Lys Ser Thr Tyr Thr Asp Lys  
305                 310                 315                 320

Leu Pro Leu Met Ile Asn Pro Lys Thr Gly Arg Val His Thr Ser Tyr  
                325                 330                 335    

His Gln Ala Val Thr Ala Thr Gly Arg Leu Ser Ser Thr Asp Pro Asn  
            340                 345                 350        

Leu Gln Asn Ile Pro Val Arg Asn Glu Glu Gly Arg Arg Ile Arg Gln  
        355                 360                 365            

Ala Phe Ile Ala Pro Glu Asp Tyr Val Ile Val Ser Ala Asp Tyr Ser  
    370                 375                 380                

Gln Ile Glu Leu Arg Ile Met Ala His Leu Ser Arg Asp Lys Gly Leu  
385                 390                 395                 400

Leu Thr Ala Phe Ala Glu Gly Lys Asp Ile His Arg Ala Thr Ala Ala  
                405                 410                 415    

Glu Val Phe Gly Leu Pro Leu Glu Thr Val Thr Ser Glu Gln Arg Arg  
            420                 425                 430        

Ser Ala Lys Ala Ile Asn Phe Gly Leu Ile Tyr Gly Met Ser Ala Phe  
        435                 440                 445            

Gly Leu Ala Arg Gln Leu Asn Ile Pro Arg Lys Glu Ala Gln Lys Tyr  
    450                 455                 460                

Met Asp Leu Tyr Phe Glu Arg Tyr Pro Gly Val Leu Glu Tyr Met Glu  
465                 470                 475                 480

Arg Thr Arg Ala Gln Ala Lys Glu Gln Gly Tyr Val Glu Thr Leu Asp  
                485                 490                 495    

Gly Arg Arg Leu Tyr Leu Pro Asp Ile Lys Ser Ser Asn Gly Ala Arg  
            500                 505                 510        

Arg Ala Ala Ala Glu Arg Ala Ala Ile Asn Ala Pro Met Gln Gly Thr  
        515                 520                 525            

Ala Ala Asp Ile Ile Lys Arg Ala Met Ile Ala Val Asp Ala Trp Leu  
    530                 535                 540                

Gln Ala Glu Gln Pro Arg Val Arg Met Ile Met Gln Val His Asp Glu  
545                 550                 555                 560

Leu Val Phe Glu Val His Lys Asp Asp Val Asp Ala Val Ala Lys Gln  
                565                 570                 575    

Ile His Gln Leu Met Glu Asn Cys Thr Arg Leu Asp Val Pro Leu Leu  
            580                 585                 590        

Val Glu Val Gly Ser Gly Glu Asn Trp Asp Gln Ala His              
        595                 600                 605


<210> 2
<211> 225
<212> PRT
<213> Escherichia coli

<400> 2
Val Ile Ser Tyr Asp Asn Tyr Val Thr Ile Leu Asp Glu Glu Thr Leu  
  1               5                  10                  15    

Lys Ala Trp Ile Ala Lys Leu Glu Lys Ala Pro Val Phe Ala Phe Ala  
             20                  25                  30        

Thr Ala Thr Asp Ser Leu Asp Asn Ile Ser Ala Asn Leu Val Gly Leu  
         35                  40                  45            

Ser Phe Ala Ile Glu Pro Gly Val Ala Ala Tyr Ile Pro Val Ala His  
     50                  55                  60                

Asp Tyr Leu Asp Ala Pro Asp Gln Ile Ser Arg Glu Arg Ala Leu Glu  
 65                  70                  75                  80

Leu Leu Lys Pro Leu Leu Glu Asp Glu Lys Ala Leu Lys Val Gly Gln  
                 85                  90                  95    

Asn Leu Lys Tyr Asp Arg Gly Ile Leu Ala Asn Tyr Gly Ile Glu Leu  
            100                 105                 110        

Arg Gly Ile Ala Phe Asp Thr Met Leu Glu Ser Tyr Ile Leu Asn Ser  
        115                 120                 125            

Val Ala Gly Arg His Asp Met Asp Ser Leu Ala Glu Arg Trp Leu Lys  
    130                 135                 140                

His Lys Thr Ile Thr Phe Glu Glu Ile Ala Gly Lys Gly Lys Asn Gln  
145                 150                 155                 160

Leu Thr Phe Asn Gln Ile Ala Leu Glu Glu Ala Gly Arg Tyr Ala Ala  
                165                 170                 175    

Glu Asp Ala Asp Val Thr Leu Gln Leu His Leu Lys Met Trp Pro Asp  
            180                 185                 190        

Leu Gln Lys His Lys Gly Pro Leu Asn Val Phe Glu Asn Ile Glu Met  
        195                 200                 205            

Pro Leu Val Pro Val Leu Ser Arg Ile Glu Arg Asn Gly Val Lys Ile  
    210                 215                 220                

Asp                                                              
225


<210> 3
<211> 381
<212> PRT
<213> Escherichia coli

<400> 3
Asp Pro Lys Val Leu His Asn His Ser Glu Glu Leu Thr Leu Arg Leu  
  1               5                  10                  15    

Ala Glu Leu Glu Lys Lys Ala His Glu Ile Ala Gly Glu Glu Phe Asn  
             20                  25                  30        

Leu Ser Ser Thr Lys Gln Leu Gln Thr Ile Leu Phe Glu Lys Gln Gly  
         35                  40                  45            

Ile Lys Pro Leu Lys Lys Thr Pro Gly Gly Ala Pro Ser Thr Ser Glu  
     50                  55                  60                

Glu Val Leu Glu Glu Leu Ala Leu Asp Tyr Pro Leu Pro Lys Val Ile  
 65                  70                  75                  80

Leu Glu Tyr Arg Gly Leu Ala Lys Leu Lys Ser Thr Tyr Thr Asp Lys  
                 85                  90                  95    

Leu Pro Leu Met Ile Asn Pro Lys Thr Gly Arg Val His Thr Ser Tyr  
            100                 105                 110        

His Gln Ala Val Thr Ala Thr Gly Arg Leu Ser Ser Thr Asp Pro Asn  
        115                 120                 125            

Leu Gln Asn Ile Pro Val Arg Asn Glu Glu Gly Arg Arg Ile Arg Gln  
    130                 135                 140                

Ala Phe Ile Ala Pro Glu Asp Tyr Val Ile Val Ser Ala Asp Tyr Ser  
145                 150                 155                 160

Gln Ile Glu Leu Arg Ile Met Ala His Leu Ser Arg Asp Lys Gly Leu  
                165                 170                 175    

Leu Thr Ala Phe Ala Glu Gly Lys Asp Ile His Arg Ala Thr Ala Ala  
            180                 185                 190        

Glu Val Phe Gly Leu Pro Leu Glu Thr Val Thr Ser Glu Gln Arg Arg  
        195                 200                 205            

Ser Ala Lys Ala Ile Asn Phe Gly Leu Ile Tyr Gly Met Ser Ala Phe  
    210                 215                 220                

Gly Leu Ala Arg Gln Leu Asn Ile Pro Arg Lys Glu Ala Gln Lys Tyr  
225                 230                 235                 240

Met Asp Leu Tyr Phe Glu Arg Tyr Pro Gly Val Leu Glu Tyr Met Glu  
                245                 250                 255    

Arg Thr Arg Ala Gln Ala Lys Glu Gln Gly Tyr Val Glu Thr Leu Asp  
            260                 265                 270        

Gly Arg Arg Leu Tyr Leu Pro Asp Ile Lys Ser Ser Asn Gly Ala Arg  
        275                 280                 285            

Arg Ala Ala Ala Glu Arg Ala Ala Ile Asn Ala Pro Met Gln Gly Thr  
    290                 295                 300                

Ala Ala Asp Ile Ile Lys Arg Ala Met Ile Ala Val Asp Ala Trp Leu  
305                 310                 315                 320

Gln Ala Glu Gln Pro Arg Val Arg Met Ile Met Gln Val His Asp Glu  
                325                 330                 335    

Leu Val Phe Glu Val His Lys Asp Asp Val Asp Ala Val Ala Lys Gln  
            340                 345                 350        

Ile His Gln Leu Met Glu Asn Cys Thr Arg Leu Asp Val Pro Leu Leu  
        355                 360                 365            

Val Glu Val Gly Ser Gly Glu Asn Trp Asp Gln Ala His              
    370                 375                 380    


<210> 4
<211> 83
<212> DNA 
<213> Artificial Sequence

<220> 
<223> Description of Combined DNA/RNA Molecule:
      Synthetic oligonucleotide

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220> 
<221> modified_base
<222> (56)..(56)
<223> 2'-O-methoxy-c

<220> 
<221> modified_base
<222> (57)..(57)
<223> 2'-O-methoxy-g

<220> 
<221> modified_base
<222> (59)..(60)
<223> 2'-O-methoxy-c

<400> 4
tttttttgct cgacggtgaa ugaugtaggu accagcagua acucgagcac gucuucgacc 60    
aaatcuggau attgcagcct cgt                                         83    


<210> 5
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 5
acgaggctgc aatatccaga                                             20    


<210> 6
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 6
tgctcgacgg tgaatgatgt                                             20    


<210> 7
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 7
gatccgaccc ctccaaggac t                                           21    


<210> 8
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 8
gcgcagatct cgagctgctg aacggcgtcg a                                31    


<210> 9
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 9
catgggcagc agccatcatc atcatcatca c                                31    


<210> 10
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 10
ccgtcgtcgg tagtagtagt agtagtgcgg c                                31    


<210> 11
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 11
taatacgact cactatagg                                              19    


<210> 12
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 12
tcgacggatc gggcggtggc tccggtggcg gcagcggcc                        39    


<210> 13
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 13
gcctagcccg ccaccgaggc caccgccgtc gccggagct                        39    


<210> 14
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 14
gcgcgtcgac gaagaaaaat tcggtgtttc c                                31    


<210> 15
<211> 32
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 15
gcgcctcgag cttttcttca gcagcttcaa cc                               32    


<210> 16
<211> 50
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 16
gcgcgtcgac ggtggcggtg gctcggtgat ttcttatgac aactacgtca            50    


<210> 17
<211> 32
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 17
gcgcaagctt agtgcgcctg atcccagttt tc                               32    


<210> 18
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 18
gcgcaagctt aatcgatctt cacaccgtta c                                31    


<210> 19
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 19
gcgcgtcgac ggtggcagcg atccgaaagt cctgcacaa                        39    


<210> 20
<211> 57
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 20
actagtgatt ataaggatga cgatgacaaa gattacaaag atgatgacga taagtag    57    


<210> 21
<211> 57
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 21
cactaatatt cctactgcta ctgtttctaa tgtttctact actgctattc atcttaa    57    


<210> 22
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 22
cgtgcactcg agttgctaaa                                             20    


<210> 23
<211> 31
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 23
gcgcactagt atgcgcctga tcccagtttt c                                31    


<210> 24
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 24
ctacttgtca tcgtcatcct tat                                         23    


<210> 25
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 25
cggcagaagt gtttggtttg                                             20    


<210> 26
<211> 10
<212> PRT
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 26
Gly Gly Gly Ser Ser Gly Gly Gly Ser Gly                          
  1               5                  10


<210> 27
<211> 83
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 27
tttttttgct cgacggtgaa tgatgtaggt accagcagta actcgagcac gtcttcgacc 60    
aaatctggat attgcagcct cgt                                         83    


<210> 28
<211> 32
<212> DNA
<213> Artificial Sequence

<220> 
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 28
ggtgcggcaa gtttctttcg gaggctgcaa gc                               32    




