                         SEQUENCE LISTING

<110>  University of Louisville Research Foundation
       Jenson, A. Bennet
       Ghim, Shin-je
       Kyle, Victoria B.
       Willer, Sharon S.
 
<120>  Diagnosing and Protecting Horses Against Papillomavirus

<130>  UN024/0UN79 (ULRF 07052)

<150>  US 60/948,315
<151>  2007-07-06

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  505
<212>  PRT
<213>  Equus caballus papillomavirus type 1

<400>  1

Met Ala Ser Tyr Trp Ser Ser Asn Ser Gln Lys Val Tyr Leu Pro Pro 
1               5                   10                  15      


Thr Thr Leu Thr Lys Ala Val Ser Thr Asp Thr Tyr Val Thr Arg Leu 
            20                  25                  30          


Gly Ile Tyr Tyr His Gly His Ser Asp Arg Leu Leu Thr Val Gly His 
        35                  40                  45              


Pro Phe Tyr Glu Ile Thr Asn Gly Arg Asp Gln Thr Met Arg Val Pro 
    50                  55                  60                  


Lys Val Ser Ala Asn Gln Phe Arg Val Phe Arg Val Ile Leu Pro Asn 
65                  70                  75                  80  


Pro Asn Lys Phe Ala Leu Pro Asp Ser Asn Val Phe Asp Pro Asp Ser 
                85                  90                  95      


Glu Arg Leu Val Trp Ala Val Lys Ala Met Glu Ile Cys Arg Gly Gln 
            100                 105                 110         


Pro Ile Gly Pro Gln Val Thr Gly His Pro Leu Phe Asn Arg Phe Glu 
        115                 120                 125             


Asp Val Glu Asn Pro Ala Val Tyr Lys Pro Gly Phe Gly Thr Gly Asp 
    130                 135                 140                 


Lys Arg Gln Asn Met Ala Ser Asp Tyr Lys Gln Ile Gln Met Val Val 
145                 150                 155                 160 


Leu Gly Cys Arg Pro Ala Leu Gly Glu His Trp Gly Lys Thr Arg Ser 
                165                 170                 175     


Ile Cys Pro Gly Ile Gln Asn Asn Val Leu Thr Gly Asp Cys Pro Ala 
            180                 185                 190         


Ile Glu Leu Phe His Thr Thr Ile Glu Asp Gly Asp Met Val Asp Ile 
        195                 200                 205             


Gly Leu Gly Asn Leu Asp Phe Ala Gln Leu Gln Ala Asp Lys Ser Gly 
    210                 215                 220                 


Ala Pro Leu Asp Ile Val Gln Ser Ile Cys Lys Tyr Pro Asp Thr Leu 
225                 230                 235                 240 


Lys Met Ala Gln Glu Ile Thr Gly Asp Thr Met Phe Phe Ser Ala Arg 
                245                 250                 255     


Arg Glu Gln Ser Tyr Leu Arg His Met Met Thr Arg Ala Gly Ile Asn 
            260                 265                 270         


Lys Glu Ala Ile Pro Glu Ala Leu Tyr Ile Lys Gly Ala Thr Glu Pro 
        275                 280                 285             


Gln Asn Thr Val Gly Thr Ser Val Tyr Cys Gly Val Val Ser Gly Ser 
    290                 295                 300                 


Leu Phe Ser Ser Asp Ala Gln Ile Phe Asn Arg Pro Phe Trp Leu Asn 
305                 310                 315                 320 


Gln Ala Gln Gly Leu Asn Asn Gly Ile Ala Trp Asn Asn Gln Leu Phe 
                325                 330                 335     


Val Thr Ala Val Asp Asn Thr Arg Ala Thr Asn Phe Thr Ile Thr Val 
            340                 345                 350         


Ala Thr Asp Glu Arg Glu Lys Asp Thr Tyr Asp Ala Gly Ser Phe Asn 
        355                 360                 365             


Ala Tyr Leu Arg His Val Glu Ser Tyr Glu Leu Gln Phe Val Phe Glu 
    370                 375                 380                 


Leu Cys Lys Val Lys Leu Thr Pro Glu Asn Leu Thr Ile Leu His Gln 
385                 390                 395                 400 


Gln Asp Pro Gly Ile Leu Lys Gly Trp Glu Leu Gly Val Thr Pro Pro 
                405                 410                 415     


Ser Gly Ser Val Leu Glu Asp Thr Tyr Arg Tyr Ile Asn Ser Val Ala 
            420                 425                 430         


Thr Lys Cys Pro Pro Asn Pro Pro Glu Glu Val Gln Glu Asp Pro Trp 
        435                 440                 445             


Gly Arg Phe Ala Phe Trp Arg Val Asp Leu Ser Glu Arg Phe Ser Leu 
    450                 455                 460                 


Asp Leu Asp Gln Phe Pro Leu Gly Arg Arg Phe Leu Ala Leu Ser Ala 
465                 470                 475                 480 


Pro Arg Thr Arg Thr Ser Ala Ala Lys Arg Lys Thr Pro Val Ser Ala 
                485                 490                 495     


Lys Ser Ser Lys Gln Arg Arg Lys Gly 
            500                 505 


<210>  2
<211>  1518
<212>  DNA
<213>  Equus caballus papillomavirus type 1

<400>  2
atggcgtcct actggtcctc caactcacag aaggtgtacc tgcccccaac cacattgact       60

aaggccgtat ccacggacac ctatgtgacc agattgggta tatactatca tggtcacagt      120

gaccggcttc tgacggtggg ccacccattc tacgagataa caaatgggcg tgaccaaacc      180

atgcgggtgc ccaaggtgtc tgcaaatcag tttcgggttt tcagagtgat tcttccaaac      240

cccaacaaat ttgctcttcc tgatagcaat gtttttgatc cagattcaga aaggctggtg      300

tgggctgtca aggctatgga gatttgcaga ggtcagccca tagggcctca ggtgactggg      360

cacccattgt ttaataggtt tgaagatgtg gaaaaccctg cagtttataa gccagggttc      420

ggcacgggtg acaagagaca gaatatggca tcagactata agcaaataca gatggtggta      480

ctgggctgca ggcctgcctt gggggagcac tggggtaaga cacgcagcat ttgcccaggc      540

attcaaaata atgttctcac cggtgactgc cctgctatag agctgtttca caccactata      600

gaggatggag atatggtaga cataggtcta gggaatctgg actttgcaca gctgcaggcc      660

gataagtcag gtgcccccct ggatatagtt cagtcaattt gcaaatatcc ggatacattg      720

aaaatggccc aggagattac tggtgacacc atgtttttta gtgctaggcg ggagcagagc      780

tatcttagac acatgatgac acgtgccggt atcaacaaag aggctatacc agaggcccta      840

tatataaagg gcgccacaga gccacagaat actgtgggca cctctgttta ctgtggggtg      900

gtgtctggct ccttatttag tagcgatgca cagattttta acaggccatt ctggctaaat      960

caggcccagg gtctaaataa tggcatagcc tggaataatc agctttttgt cacggcggtg     1020

gataataccc gggccactaa tttcactata accgtggcga cagatgagag ggagaaggat     1080

acctatgatg ctggaagctt taatgcttac ctgagacatg tagaatccta tgagctgcag     1140

tttgtatttg aactttgtaa ggtcaagctg acccctgaga acctgacaat cctgcaccag     1200

caggaccccg gcatacttaa gggctgggag ctgggggtga cccccccttc gggttcggtc     1260

ttggaggaca cctaccgcta cattaattct gtagcgacca agtgcccgcc taatccacct     1320

gaggaggtgc aggaggatcc ctggggacgg ttcgcatttt ggagagttga cctttcagag     1380

cgcttttctc ttgaccttga ccagtttcca ttgggaagaa ggtttttggc cctttccgca     1440

ccccgtaccc gcacgtccgc agctaagcgt aagaccccgg tttctgccaa gtcttctaaa     1500

caaagaagaa agggctaa                                                   1518


<210>  3
<211>  495
<212>  PRT
<213>  Bovine papillomavirus type 1

<400>  3

Met Ala Leu Trp Gln Gln Gly Gln Lys Leu Tyr Leu Pro Pro Thr Pro 
1               5                   10                  15      


Val Ser Lys Val Leu Cys Ser Glu Thr Tyr Val Gln Arg Lys Ser Ile 
            20                  25                  30          


Phe Tyr His Ala Glu Thr Glu Arg Leu Leu Thr Ile Gly His Pro Tyr 
        35                  40                  45              


Tyr Pro Val Ser Ile Gly Ala Lys Thr Val Pro Lys Val Ser Ala Asn 
    50                  55                  60                  


Gln Tyr Arg Val Phe Lys Ile Gln Leu Pro Asp Pro Asn Gln Phe Ala 
65                  70                  75                  80  


Leu Pro Asp Arg Thr Val His Asn Pro Ser Lys Glu Arg Leu Val Trp 
                85                  90                  95      


Ala Val Ile Gly Val Gln Val Ser Arg Gly Gln Pro Leu Gly Gly Thr 
            100                 105                 110         


Val Thr Gly His Pro Thr Phe Asn Ala Leu Leu Asp Ala Glu Asn Val 
        115                 120                 125             


Asn Arg Lys Val Thr Thr Gln Thr Thr Asp Asp Arg Lys Gln Thr Gly 
    130                 135                 140                 


Leu Asp Ala Lys Gln Gln Gln Ile Leu Leu Leu Gly Cys Thr Pro Ala 
145                 150                 155                 160 


Glu Gly Glu Tyr Trp Thr Thr Ala Arg Pro Cys Val Thr Asp Arg Leu 
                165                 170                 175     


Glu Asn Gly Ala Cys Pro Pro Leu Glu Leu Lys Asn Lys His Ile Glu 
            180                 185                 190         


Asp Gly Asp Met Met Glu Ile Gly Phe Gly Ala Ala Asn Phe Lys Glu 
        195                 200                 205             


Ile Asn Ala Ser Lys Ser Asp Leu Pro Leu Asp Ile Gln Asn Glu Ile 
    210                 215                 220                 


Cys Leu Tyr Pro Asp Tyr Leu Lys Met Ala Glu Asp Ala Ala Gly Asn 
225                 230                 235                 240 


Ser Met Phe Phe Phe Ala Arg Lys Glu Gln Val Tyr Val Arg His Ile 
                245                 250                 255     


Trp Thr Arg Gly Gly Ser Glu Lys Glu Ala Pro Thr Thr Asp Phe Tyr 
            260                 265                 270         


Leu Lys Asn Asn Lys Gly Asp Ala Thr Leu Lys Ile Pro Ser Val His 
        275                 280                 285             


Phe Gly Ser Pro Ser Gly Ser Leu Val Ser Thr Asp Asn Gln Ile Phe 
    290                 295                 300                 


Asn Arg Pro Tyr Trp Leu Phe Arg Ala Gln Gly Met Asn Asn Gly Ile 
305                 310                 315                 320 


Ala Trp Asn Asn Leu Leu Phe Leu Thr Val Gly Asp Asn Thr Arg Gly 
                325                 330                 335     


Thr Asn Leu Thr Ile Ser Val Ala Ser Asp Gly Thr Pro Leu Thr Glu 
            340                 345                 350         


Tyr Asp Ser Ser Lys Phe Asn Val Tyr His Arg His Met Glu Glu Tyr 
        355                 360                 365             


Lys Leu Ala Phe Ile Leu Glu Leu Cys Ser Val Glu Ile Thr Ala Gln 
    370                 375                 380                 


Thr Val Ser His Leu Gln Gly Leu Met Pro Ser Val Leu Glu Asn Trp 
385                 390                 395                 400 


Glu Ile Gly Val Gln Pro Pro Thr Ser Ser Ile Leu Glu Asp Thr Tyr 
                405                 410                 415     


Arg Tyr Ile Glu Ser Pro Ala Thr Lys Cys Ala Ser Asn Val Ile Pro 
            420                 425                 430         


Ala Lys Glu Asp Pro Tyr Ala Gly Phe Lys Phe Trp Asn Ile Asp Leu 
        435                 440                 445             


Lys Glu Lys Leu Ser Leu Asp Leu Asp Gln Phe Pro Leu Gly Arg Arg 
    450                 455                 460                 


Phe Leu Ala Gln Gln Gly Ala Gly Cys Ser Thr Val Arg Lys Arg Arg 
465                 470                 475                 480 


Ile Ser Gln Lys Thr Ser Ser Lys Pro Ala Lys Lys Lys Lys Lys 
                485                 490                 495 


<210>  4
<211>  1488
<212>  DNA
<213>  Bovine papillomavirus type 1

<400>  4
atggcgttgt ggcaacaagg ccagaagctg tatctccctc caacccctgt aagcaaggtg       60

ctttgcagtg aaacctatgt gcaaagaaaa agcatttttt atcatgcaga aacggagcgc      120

ctgctaacta taggacatcc atattaccca gtgtctatcg gggccaaaac tgttcctaag      180

gtctctgcaa atcagtatag ggtatttaaa atacaactac ctgatcccaa tcaatttgca      240

ctacctgaca ggactgttca caacccaagt aaagagcggc tggtgtgggc agtcataggt      300

gtgcaggtgt ccagagggca gcctcttgga ggtactgtaa ctgggcaccc cacttttaat      360

gctttgcttg atgcagaaaa tgtgaataga aaagtcacca cccaaacaac agatgacagg      420

aaacaaacag gcctagatgc taagcaacaa cagattctgt tgctaggctg tacccctgct      480

gaaggggaat attggacaac agcccgtcca tgtgttactg atcgtctaga aaatggcgcc      540

tgccctcctc ttgaattaaa aaacaagcac atagaagatg gggatatgat ggaaattggg      600

tttggtgcag ccaacttcaa agaaattaat gcaagtaaat cagatctacc tcttgacatt      660

caaaatgaga tctgcttgta cccagactac ctcaaaatgg ctgaggacgc tgctggtaat      720

agcatgttct tttttgcaag gaaagaacag gtgtatgtta gacacatctg gaccagaggg      780

ggctcggaga aagaagcccc taccacagat ttttatttaa agaataataa aggggatgcc      840

acccttaaaa tacccagtgt gcattttggt agtcccagtg gctcactagt ctcaactgat      900

aatcaaattt ttaatcggcc ctactggcta ttccgtgccc agggcatgaa caatggaatt      960

gcatggaata atttattgtt tttaacagtg ggggacaata cacgtggtac taatcttacc     1020

ataagtgtag cctcagatgg aaccccacta acagagtatg atagctcaaa attcaatgta     1080

taccatagac atatggaaga atataagcta gcctttatat tagagctatg ctctgtggaa     1140

atcacagctc aaactgtgtc acatctgcaa ggacttatgc cctctgtgct tgaaaattgg     1200

gaaataggtg tgcagcctcc tacctcatcg atattagagg acacctatcg ctatatagag     1260

tctcctgcaa ctaaatgtgc aagcaatgta attcctgcaa aagaagaccc ttatgcaggg     1320

tttaagtttt ggaacataga tcttaaagaa aagctttctt tggacttaga tcaatttccc     1380

ttgggaagaa gatttttagc acagcaaggg gcaggatgtt caactgtgag aaaacgaaga     1440

attagccaaa aaacttccag taagcctgca aaaaaaaaaa aaaaataa                  1488


<210>  5
<211>  497
<212>  PRT
<213>  Bovine papillomavirus type 2

<400>  5

Met Ala Leu Trp Gln Gln Gly Gln Lys Leu Tyr Leu Pro Pro Thr Pro 
1               5                   10                  15      


Val Ser Lys Val Leu Cys Ser Glu Thr Tyr Val Gln Arg Lys Ser Ile 
            20                  25                  30          


Phe Tyr His Ala Glu Thr Glu Arg Leu Leu Thr Val Gly His Pro Tyr 
        35                  40                  45              


Tyr Gln Val Thr Val Gly Asp Lys Thr Val Pro Lys Val Ser Ala Asn 
    50                  55                  60                  


Gln Phe Arg Val Phe Lys Ile Gln Leu Pro Asp Pro Asn Gln Phe Ala 
65                  70                  75                  80  


Leu Pro Asp Arg Thr Val His Asn Pro Ser Lys Glu Arg Leu Val Trp 
                85                  90                  95      


Ala Val Ile Gly Val Gln Val Ser Arg Gly Gln Pro Leu Gly Gly Thr 
            100                 105                 110         


Val Thr Gly His Pro Thr Phe Asn Ala Leu Leu Asp Ala Glu Asn Val 
        115                 120                 125             


Asn Arg Lys Val Thr Ala Gln Thr Thr Asp Asp Arg Lys Gln Thr Gly 
    130                 135                 140                 


Leu Asp Ala Lys Gln Gln Gln Ile Leu Leu Leu Gly Cys Thr Pro Ala 
145                 150                 155                 160 


Glu Gly Glu Tyr Trp Thr Thr Ala Arg Pro Cys Val Thr Asp Arg Leu 
                165                 170                 175     


Glu Asn Gly Ala Cys Pro Pro Leu Glu Leu Lys Asn Lys His Ile Glu 
            180                 185                 190         


Asp Gly Asp Met Met Glu Ile Gly Phe Gly Ala Ala Asp Phe Lys Thr 
        195                 200                 205             


Leu Asn Ala Ser Lys Ser Asp Leu Pro Leu Asp Ile Gln Asn Glu Ile 
    210                 215                 220                 


Cys Leu Tyr Pro Asp Tyr Leu Lys Met Ala Glu Asp Ala Ala Gly Asn 
225                 230                 235                 240 


Ser Met Phe Phe Phe Ala Arg Lys Glu Gln Val Tyr Val Arg His Ile 
                245                 250                 255     


Trp Thr Arg Gly Gly Ser Glu Lys Glu Ala Pro Ser Lys Asp Phe Tyr 
            260                 265                 270         


Leu Lys Asn Gly Arg Gly Glu Glu Thr Leu Lys Ile Pro Ser Val His 
        275                 280                 285             


Phe Gly Ser Pro Ser Gly Ser Leu Val Ser Thr Asp Asn Gln Ile Phe 
    290                 295                 300                 


Asn Arg Pro Tyr Trp Leu Phe Arg Ala Gln Gly Met Asn Asn Gly Ile 
305                 310                 315                 320 


Ala Trp Asn Asn Leu Leu Phe Leu Thr Val Gly Asp Asn Thr Arg Gly 
                325                 330                 335     


Thr Asn Leu Ser Ile Ser Val Ala Ala Asp Gly Asn Ala Leu Ser Glu 
            340                 345                 350         


Tyr Asp Thr Gly Lys Phe Asn Leu Tyr His Arg His Met Glu Glu Tyr 
        355                 360                 365             


Lys Leu Ala Phe Ile Leu Glu Leu Cys Ser Val Glu Ile Thr Ala Gln 
    370                 375                 380                 


Thr Leu Ser His Leu Gln Gly Leu Met Pro Ser Val Leu Gln Asn Trp 
385                 390                 395                 400 


Glu Ile Gly Val Gln Pro Pro Ala Ser Ser Ile Leu Glu Asp Thr Tyr 
                405                 410                 415     


Arg Tyr Ile Glu Ser Pro Ala Thr Lys Cys Ala Ser Asn Val Ile Pro 
            420                 425                 430         


Pro Lys Glu Asp Pro Tyr Ala Gly Leu Lys Phe Trp Ser Ile Asp Leu 
        435                 440                 445             


Lys Glu Lys Leu Ser Leu Asp Leu Asp Gln Phe Pro Leu Gly Arg Arg 
    450                 455                 460                 


Phe Leu Ala Gln Gln Gly Ala Gly Cys Ser Thr Val Arg Lys Arg Ala 
465                 470                 475                 480 


Val Ala Thr Arg Asn Ser Ser Lys Pro Ala Lys Arg Lys Lys Ile Lys 
                485                 490                 495     


Ala 
    


<210>  6
<211>  1494
<212>  DNA
<213>  Bovine papillomavirus type 2

<400>  6
atggcgttgt ggcaacaagg ccaaaagctg tatctccctc caacccctgt aagcaaggtg       60

ctatgcagtg aaacctatgt gcaaagaaaa agcatattct atcatgcaga aacggaacgc      120

ctgttaactg taggacatcc atactaccaa gtcactgtgg gggacaaaac tgttcccaaa      180

gtgtctgcta atcaatttag agtttttaaa atacagctcc ccgatcccaa tcagtttgca      240

ttgcctgata ggactgtgca caatccaagc aaggagcgcc tggtttgggc tgtaataggg      300

gttcaagtat ctcgtggcca accactagga ggcacagtta ctgggcaccc cacttttaat      360

gctctgcttg atgcagaaaa tgttaataga aaagttactg cacaaacaac agatgacagg      420

aagcaaacag gattagatgc taagcaacaa cagattctgt tgctgggctg tacccctgca      480

gaaggggaat actggaccac agcccgtcca tgtgttactg atagactaga aaatggtgcg      540

tgtcctcctt tagaattaaa gaacaaacac atagaagatg gagacatgat ggaaataggg      600

tttggtgctg ctgactttaa aacactaaat gccagtaaat cagatctacc tcttgacatt      660

caaaatgaaa tatgcctgta tccagactac ctcaaaatgg ctgaagatgc tgctggaaac      720

agtatgttct tctttgcaag aaaagaacaa gtgtatgtaa ggcatatatg gactcggggg      780

ggctctgaaa aagaagcacc cagtaaagac ttctacctca aaaatggtag aggtgaagaa      840

actctaaaaa tacctagtgt gcactttggc agtcccagtg gatccttggt gtccactgat      900

aatcaaatat ttaacaggcc ttattggcta ttcagggctc agggcatgaa caatgggatt      960

gcatggaata atttattatt tttaactgta ggggataaca cacggggaac taaccttagt     1020

attagtgtag ctgcagatgg aaacgcattg tcagagtatg atactggcaa atttaaccta     1080

taccataggc atatggaaga atataagcta gcatttatat tggagctgtg ctctgttgag     1140

attactgcac aaacactgtc acatctgcaa ggactgatgc cctctgtgct acaaaactgg     1200

gaaatcgggg tgcaacctcc tgcttcttct attttagaag atacttatag gtacatagag     1260

tctcctgcaa ctaaatgtgc aagtaatgtt ataccaccca aagaagaccc ttatgcaggg     1320

cttaagtttt ggagcataga cttaaaagaa aagctgtctt tggacttaga ccaatttccc     1380

ttgggaagaa gattcttagc tcagcaaggg gcaggatgtt caactgtgag aaagagagct     1440

gttgcaacca gaaattccag taagcctgca aaaagaaaaa aaatcaaagc ttaa           1494


