Table 8.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with Endometriosis from the analysis of genome wide scan (GWS) data:
NOT PELVIC PAIN. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers (both T test and Permutation test p-values are
displayed; see Example section) and for the most highly associated multi-marker haplotypes centered
at the reference marker and defined by the sliding windows of specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   ldstatv4        ldstatv4   ldstatv4   ldstatv4   ldstatv4   singletype                         singletype                       
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        Single Marker   W03        W05        W07        W09        Single Genotype Likelihood Ratio   Single Allele Likelihood Ratio   
110         1     11639887       12139487   4212     ACAATAGAGAYAGTTTATGGC   0.730           -          -          -          -          0.634           -          -          -          -          0.413                              0.753                            
110         1     11644280       2294642    4213     TTCTACCTGTRTTCTTTGACC   0.045           0.519      -          -          -          0.000           0.553      -          -          -          0.281                              0.045                            
110         1     11645275       3125815    4214     ACAGCTTTACRGACATTGGAT   0.391           1.538      3.287      -          -          0.376           1.743      2.834      -          -          0.320                              0.391                            
110         1     11658997       3767300    4215     AGTCAGAATTYGGCGGGGGGT   3.075           3.392      2.664      1.090      -          2.985           3.478      2.477      1.113      -          2.467                              3.075                            
110         1     11659187       2336030    4216     TGGAAGCATGYAGTTGACCAA   5.300           3.572      1.784      1.843      -          5.131           3.837      1.679      1.744      -          4.325                              5.264                            
110         1     11668046       2336031    4217     TATGGGTGGCRCTATGCAGAG   1.512           3.190      2.793      -          -          1.397           3.396      2.464      -          -          0.984                              1.512                            
110         1     11676755       7539455    4218     TGCCTCCCTAKCTCTTGTGAA   0.306           0.693      -          -          -          0.261           0.716      -          -          -          0.298                              0.306                            
110         1     11686253       17037302   4219     AGCAGATAAGRGTCACAACCC   0.101           -          -          -          -          0.053           -          -          -          -          0.379                              0.101                            
111         1     89531807       10922605   4262     ATCTTTGTCTRGTTACTGCTT   0.081           -          -          -          -          0.053           -          -          -          -          0.429                              0.081                            
111         1     89544547       2893102    4263     CCAAGGCAACMAATAAAGGGG   0.081           2.192      -          -          -          0.048           2.609      -          -          -          0.567                              0.081                            
111         1     89559874       1117177    4264     CCCTATGAATRAGATTTCTAA   3.551           3.325      4.687      -          -          3.449           3.388      3.717      -          -          2.998                              3.551                            
111         1     89561889       7530906    4265     GTATAGAACTYAGTAGCACAT   4.615           4.505      3.574      3.235      -          4.511           4.548      3.128      2.860      -          4.062                              4.615                            
111         1     89571656       4658132    4266     ATGTTAGAGTMTTTGCAGTCA   2.343           4.084      5.509      3.323      3.580      2.234           4.216      4.461      3.029      3.195      1.794                              2.343                            
111         1     89590371       6672564    4267     TTAATCTTGAYGTAAGTGATG   4.272           3.841      4.449      4.876      3.450      4.130           4.343      3.934      4.208      3.127      3.770                              4.272                            
111         1     89597908       12732279   4268     CATGTGATCCYGTTAATCTCT   1.527           3.511      3.699      3.395      4.318      1.434           3.797      3.143      2.958      3.713      1.310                              1.527                            
111         1     89605052       1335647    4269     ACCTCATACARTATTTGTTCT   4.088           2.510      3.878      2.859      -          4.003           2.918      3.229      2.555      -          3.168                              4.088                            
111         1     89608514       6681338    4270     CATTTGAGGGYTGGAATTAGG   2.613           2.638      2.762      -          -          2.532           3.041      2.449      -          -          1.956                              2.613                            
111         1     89614630       972314     4271     TTTCTTCAATRTAAGTTCTCA   0.734           1.599      -          -          -          0.681           1.641      -          -          -          1.282                              0.734                            
111         1     89615047       7511795    4272     AAGTCGTCTAYCAAACAGTGA   0.734           -          -          -          -          0.690           -          -          -          -          1.225                              0.706                            
112         2     40381169       6544318    4487     GTGCCTCAGCRTAAGTCTGAA   0.136           -          -          -          -          0.106           -          -          -          -          0.224                              0.136                            
112         2     40392472       2110743    4488     CAGTTTCTACRACAAATATCA   0.926           1.060      -          -          -          0.813           1.179      -          -          -          0.343                              0.926                            
112         2     40403959       741287     4489     ATGGATGTAAMTTAAGACTTT   1.579           2.751      2.464      -          -          1.438           2.763      2.253      -          -          1.293                              1.579                            
112         2     40424930       10490051   4490     TCATGCACTAYTTGCCTGGGA   3.031           2.217      1.984      1.413      -          2.947           2.365      1.850      1.419      -          2.236                              3.031                            
112         2     40426854       10490049   4491     TAGGGTTGATKTCTTTTATTG   0.226           1.641      2.739      2.240      0.833      0.164           2.047      2.449      2.133      0.810      0.387                              0.226                            
112         2     40427711       7561383    4492     GGCAATAGATRGCACTTTGTA   0.432           1.301      2.278      1.686      1.777      0.409           1.574      2.104      1.610      1.719      0.344                              0.432                            
112         2     40435853       990270     4493     TACTGTGATAMTGCTGGAAAA   2.317           2.177      1.943      1.393      2.206      2.205           2.317      1.769      1.350      2.082      1.561                              2.317                            
112         2     40444462       2216009    4494     GTTATAACATKCATTTCTTTA   1.573           2.474      2.310      2.781      2.745      1.491           2.547      2.158      2.530      2.559      1.204                              1.586                            
112         2     40457774       2192777    4495     GTTACTCAAGRAAGAGTTTAT   2.857           1.441      3.127      2.528      3.025      2.764           1.638      2.860      2.403      2.767      2.267                              2.857                            
112         2     40469024       6742210    4496     ACGTTCATCTRAGCAGTATCT   1.061           3.027      3.661      3.037      -          1.011           3.364      3.281      2.825      -          0.650                              1.061                            
112         2     40471324       2373859    4497     TTTTCACATAYACATAGTCCA   4.616           2.967      3.137      -          -          4.516           3.331      2.838      -          -          3.842                              4.616                            
112         2     40473654       7570435    4498     GCAGGAGAAAYGTTGTCAAAT   1.160           3.336      -          -          -          1.105           3.429      -          -          -          0.761                              1.160                            
112         2     40474891       12615002   4499     CAACATGTTAYGCAAACACCT   1.310           -          -          -          -          1.249           -          -          -          -          0.864                              1.310                            
113         2     146356209      1922035    4577     TCATTAACATYAGAAGCACAT   0.092           -          -          -          -          0.067           -          -          -          -          0.024                              0.092                            
113         2     146360816      11902459   4578     CCCAAGATTCRATATTGCTCG   0.704           0.236      -          -          -          0.595           0.225      -          -          -          0.446                              0.704                            
113         2     146382727      10496992   4579     TCCATATTCARTGATTTTCTC   0.471           1.118      0.674      -          -          0.429           1.110      0.695      -          -          0.210                              0.471                            
113         2     146385652      12623125   4580     GGGGAAAAGTRTTTTTTACAA   2.730           1.647      0.936      1.164      -          2.592           1.812      0.899      1.126      -          2.059                              2.730                            
113         2     146389248      997033     4581     TTTAAAGTGARTCCTATAATA   0.673           1.655      2.238      3.257      3.317      0.593           2.029      1.870      2.637      2.854      0.315                              0.673                            
113         2     146397788      1567989    4582     TTAGGTGGCAMTAATACAGGA   2.730           2.025      5.391      5.875      4.279      2.587           2.191      3.957      4.374      3.572      2.059                              2.730                            
113         2     146410026      1515259    4583     GCAAAATAATKCTGGTGCAGG   0.942           3.665      4.558      5.178      4.316      0.849           4.191      3.892      4.347      3.630      0.531                              0.942                            
113         2     146436279      2381866    4584     TGCATAGATAYCATTGATGCC   1.862           4.071      4.220      3.392      3.014      1.780           4.623      3.603      3.130      2.785      1.271                              1.862                            
113         2     146452815      10173102   4585     CAAAATGGTARTTTAAGAATT   4.430           2.974      3.499      2.839      2.397      4.322           3.156      3.178      2.565      2.262      3.713                              4.430                            
113         2     146457263      1515241    4586     GCACTCCTAAYTGTTTTGTTT   1.147           3.011      2.408      2.264      -          1.060           3.162      2.275      2.164      -          0.936                              1.147                            
113         2     146468631      2130858    4587     TGCCCATGCCYGAGGTTCGGC   1.247           0.395      2.057      -          -          1.196           0.393      1.961      -          -          0.855                              1.247                            
113         2     146491970      6718009    4588     ACACTGCTAGMACTCCAGGAG   0.745           0.983      -          -          -          0.671           0.954      -          -          -          0.557                              0.745                            
113         2     146495713      1515252    4589     GCAGAATTAARTGATACACTT   0.404           -          -          -          -          0.377           -          -          -          -          0.181                              0.404                            
114         3     138389801      4678297    4760     CCCTATGTCAYTACTCCTCAC   0.878           -          -          -          -          0.839           -          -          -          -          0.943                              0.878                            
114         3     138398041      429654     4761     TGCTCCCTAARTACAACAGTG   1.359           2.008      -          -          -          1.333           2.076      -          -          -          1.603                              1.359                            
114         3     138406488      979604     4762     CTGTACATTTYGCTATTAAGA   3.543           2.620      4.268      -          -          3.456           2.954      3.579      -          -          3.503                              3.543                            
114         3     138420721      9869035    4763     GAAAAGTGCTRTGTTTGGACA   0.763           4.075      5.800      4.013      -          0.663           4.821      4.409      3.353      -          0.575                              0.763                            
114         3     138429828      1381251    4764     AAGACAGGATKATATGCTCCC   3.477           3.964      6.243      4.557      2.647      3.395           4.469      4.448      3.721      2.364      3.216                              3.477                            
114         3     138446657      9838168    4765     AACCATGCCCYGGCCACTGCT   5.374           4.512      5.560      4.690      3.845      5.260           5.201      4.017      3.759      3.261      4.759                              5.374                            
114         3     138458669      4678306    4766     GAACTCATTAYGGGGCATTTT   5.374           4.113      6.594      4.801      4.298      5.337           5.051      4.629      3.721      3.503      4.759                              5.374                            
114         3     138467537      17311950   4767     AACTCCCTGAYGGTGAATGCA   0.723           3.987      5.664      5.778      3.846      0.665           4.526      4.013      4.125      3.165      0.903                              0.723                            
114         3     138475530      12107468   4768     AGATTTTTCTKTAGGGAACCA   1.728           3.939      5.493      3.465      3.583      1.644           4.262      3.943      2.827      2.988      1.750                              1.728                            
114         3     138495078      9851969    4769     TACTTCATTGYTGTGTGATGC   3.664           2.490      3.587      3.429      3.429      3.577           2.703      2.861      2.856      2.842      5.353                              3.664                            
114         3     138498177      6439699    4770     ATCCAATTCARTCCTCGTATA   1.781           3.327      4.368      3.542      2.663      1.670           3.762      3.368      2.928      2.362      1.442                              1.781                            
114         3     138538006      3912122    4771     GTCTTAGGTAYGAGTCTGTAA   2.525           2.973      4.745      3.195      2.702      2.434           3.340      3.574      2.731      2.477      2.239                              2.525                            
114         3     138546472      4678310    4772     TTTAATTGAAYGGACATGAAT   1.507           3.554      3.317      3.286      1.567      1.377           3.923      2.845      2.804      1.497      1.495                              1.507                            
114         3     138548552      1542535    4773     GTTATTATCARTAGTGGCCTC   1.507           3.418      3.725      1.761      1.663      1.449           3.652      3.041      1.699      1.589      1.495                              1.507                            
114         3     138553732      11921899   4774     TAATGAAACAYAGAGATACAA   2.514           2.899      2.626      2.017      1.666      2.410           3.421      2.362      1.864      1.618      2.290                              2.514                            
114         3     138603933      13064915   4775     GAATCCAGGGYAGAGTGACCC   2.595           2.626      2.775      2.502      2.000      2.549           2.895      2.441      2.225      1.846      2.063                              2.595                            
114         3     138610709      4678319    4776     CCTTTAAATAYGTTCTTTCCT   3.144           2.350      2.223      2.118      1.917      3.044           2.406      2.100      1.924      1.777      2.454                              3.144                            
114         3     138638613      4597661    4777     AAATTGTTGCYGAAACATTAA   0.798           2.081      1.458      2.104      1.374      0.711           2.301      1.422      1.922      1.309      2.083                              0.798                            
114         3     138642262      9809649    4778     GTGGCAGAGTRGCATGGGGAT   3.147           1.484      0.806      0.749      -          3.069           1.611      0.801      0.737      -          2.440                              3.147                            
114         3     138673455      4678242    4779     GACCTACTCARTCATGAGCTC   0.853           1.423      0.518      -          -          0.786           1.480      0.569      -          -          1.004                              0.739                            
114         3     138682404      4478034    4780     CCATGCAGAAYAGTTTCTGTG   0.671           0.479      -          -          -          0.659           0.493      -          -          -          0.347                              0.671                            
114         3     138685339      4234225    4781     TTCATGGACAYTGAAGCTCTG   0.218           -          -          -          -          0.178           -          -          -          -          0.150                              0.218                            
108         4     65432628       7674285    4910     AGATAAATTTYAATTGGACAC   2.279           -          -          -          -          2.175           -          -          -          -          2.824                              2.329                            
108         4     65433861       1864522    4911     TGTGCTATTCRTCTTGCCATA   1.097           1.597      -          -          -          1.028           1.572      -          -          -          1.393                              1.097                            
108         4     65443157       6841252    4912     ATTTGGATACRTTCAGTAGAA   1.838           1.611      2.234      -          -          1.730           1.587      2.024      -          -          1.355                              1.876                            
108         4     65451304       6816819    4913     TGTTGTTGAGKCTCTGGTGTA   0.911           2.086      2.710      2.291      -          0.797           2.104      2.384      2.105      -          1.086                              0.911                            
108         4     65457321       12504921   4914     CATGTTTACCRTCACTACAGT   1.361           2.920      2.446      5.143      5.859      1.269           3.167      2.174      4.207      4.466      0.868                              1.361                            
108         4     65473871       1372029    4915     TTTTTTTAAARTAGTGAGCAT   2.040           2.602      6.704      6.111      5.142      1.975           2.809      5.060      4.551      4.003      1.650                              2.040                            
108         4     65500573       1372022    4916     GCATGTTTGAYAGAAGACCTC   0.602           4.228      8.131      5.494      4.553      0.542           4.684      5.420      4.149      3.625      0.302                              0.602                            
108         4     65550577       10003446   4917     CTTTATACTGYCCAGAAGTAA   0.322           4.319      5.865      8.097      7.107      0.285           4.423      4.362      5.585      5.357      0.239                              0.322                            
108         4     65566155       1440949    4918     AACTCATATCYCTCTTATTCT   0.863           2.906      5.803      5.976      6.807      0.821           3.331      4.036      4.658      5.046      0.615                              0.863                            
108         4     65578180       2196985    4919     GCTCATGCTGYAGAAAAGATG   1.964           2.755      4.282      5.173      5.302      1.898           3.106      3.520      3.994      4.103      1.481                              1.964                            
108         4     65579835       1440934    4920     AGTCTGAATTKTAGAATATTG   1.642           1.665      3.668      4.122      -          1.547           1.749      3.179      3.434      -          1.371                              1.642                            
108         4     65581965       11733026   4921     TGTTTATCAGYGATTGAAGGC   1.932           2.053      3.491      -          -          1.834           2.396      2.986      -          -          1.667                              1.932                            
108         4     65584859       1440931    4922     CATTAAAAGAMAAATTGAGTG   2.017           1.881      -          -          -          1.917           2.163      -          -          -          1.499                              2.017                            
108         4     65586192       13152245   4923     AGGGTGATAAYAGTCAAGGAT   0.277           -          -          -          -          0.226           -          -          -          -          1.155                              0.177                            
115         5     40247559       350058     5005     CTGCTGCTAARGTAGATGAGT   1.470           -          -          -          -          1.345           -          -          -          -          0.770                              1.470                            
115         5     40258940       46261      5006     GGGACATTTCYGGAAGGGCTT   1.723           2.666      -          -          -          1.689           2.759      -          -          -          1.262                              1.723                            
115         5     40262019       10512729   5007     TATGGAGTACRGTCACAAGAT   4.077           2.847      2.734      -          -          3.930           2.845      2.498      -          -          3.844                              4.077                            
115         5     40264131       1478903    5008     CCTTAGGTTGRTAGAGCCTTC   1.183           2.847      -          -          -          1.111           2.826      -          -          -          0.748                              1.183                            
115         5     40264370       353365     5009     CACTTCTGTGRGTTAGAAGTC   0.452           -          -          -          -          0.376           -          -          -          -          0.607                              0.452                            
116         8     133420302      7824311    5312     CACCTCCTCARTGAGCCTTCT   0.050           -          -          -          -          0.018           -          -          -          -          0.008                              0.050                            
116         8     133424426      10956658   5313     TCAGGGCTAAYGTATTGGGCA   1.785           0.984      -          -          -          1.672           0.987      -          -          -          1.305                              1.785                            
116         8     133427685      1379581    5314     TAAGCCACATRTGGGTACCCT   0.559           3.037      2.201      -          -          0.511           3.134      2.020      -          -          0.373                              0.559                            
116         8     133429842      1457776    5315     ACAAGCCCTGYAACTGAGGGT   4.134           3.290      2.686      1.953      -          4.002           3.331      2.348      1.846      -          3.561                              4.134                            
116         8     133431853      1466313    5316     GGGTTTACAGRTAAGATCCCG   2.700           2.968      4.430      3.594      1.928      2.591           3.022      3.753      3.091      1.826      2.122                              2.597                            
116         8     133435969      930895     5317     GAGCCACTAARACCAGGCAGG   1.190           3.613      4.430      4.226      3.315      1.140           3.667      3.735      3.472      2.874      0.787                              1.190                            
116         8     133443513      6984395    5318     AAAACATGCAMGAGAGCTCCT   2.195           3.238      4.925      3.813      3.802      2.116           3.277      3.879      3.239      3.232      1.716                              2.195                            
116         8     133444004      7820317    5319     TTCTAGCAGGRGTTTTTGTGC   0.162           1.131      4.392      4.582      4.315      0.149           1.192      3.635      3.517      3.547      0.075                              0.162                            
116         8     133446622      2100646    5320     TAAAAAATCAYGTTGAACAAA   0.721           2.731      2.980      5.077      -          0.669           2.747      2.521      3.871      -          0.852                              0.721                            
116         8     133447896      6415551    5321     TTGGCTAGTAYCTCTAGTTCA   3.404           2.397      3.686      -          -          3.316           2.608      3.172      -          -          2.904                              3.404                            
116         8     133451680      6992843    5322     TGTGATCCTCYTGGTGCCCAG   0.113           2.790      -          -          -          0.080           2.945      -          -          -          0.486                              0.113                            
116         8     133461875      2608209    5323     ATCAGAAGCCRGATGAAGAAG   0.240           -          -          -          -          0.149           -          -          -          -          0.412                              0.240                            
117         9     131668850      1108535    5458     AAGACTCTTTYGTGCTTCTGC   0.211           -          -          -          -          0.157           -          -          -          -          0.307                              0.211                            
117         9     131669242      1108534    5459     ATTTGGGCTCRGAACCCAAGT   0.357           3.122      -          -          -          0.323           3.171      -          -          -          0.194                              0.357                            
117         9     131680547      2296788    5460     AACGGTGAGCKGAGGGGGGAC   4.257           2.618      2.797      -          -          4.149           2.808      2.562      -          -          3.386                              4.257                            
117         9     131695685      13295392   5461     TGCCCTTGAGKCTAGGTGACA   2.089           3.650      3.261      2.396      -          1.976           3.958      2.922      2.183      -          1.529                              2.089                            
117         9     131706896      6478924    5462     TCCTGTTACARTGGAAGCTCT   3.814           2.320      2.508      -          -          3.710           2.411      2.276      -          -          3.047                              3.814                            
117         9     131713515      10739766   5463     TATTAGGATGYGATCAGGCAG   0.000           2.150      -          -          -          0.000           2.255      -          -          -          0.059                              0.000                            
117         9     131721440      1054874    5464     CAAAATCTTTYGGTCAACTTT   0.031           -          -          -          -          0.000           -          -          -          -          0.007                              0.054                            
118         10    60994814       7100874    5493     AGTTATTGTTKGAGCTCTTGA   0.000           -          -          -          -          0.000           -          -          -          -          0.096                              0.000                            
118         10    61000491       7906222    5494     TGGCTTCATCRGATTGTGCAG   1.147           1.203      -          -          -          1.064           1.340      -          -          -          0.952                              1.147                            
118         10    61007793       7082987    5495     CATTTTCCTCYAAGTGCCATA   2.487           1.932      2.785      -          -          2.359           1.890      2.432      -          -          2.107                              2.487                            
118         10    61010896       10509108   5496     AACTTGTAACRTCACTCTAGA   1.292           2.811      2.801      1.730      -          1.246           2.809      2.478      1.574      -          1.162                              1.292                            
118         10    61015108       11592742   5497     TCCACTACACYAGAGATTTTC   0.348           0.528      2.125      2.565      2.076      0.294           0.573      1.898      2.197      1.864      0.126                              0.348                            
118         10    61016172       12570492   5498     AAGGCAATATYGAGTTATAGG   1.138           1.139      2.932      2.100      1.475      1.046           1.344      2.491      1.907      1.414      0.685                              1.138                            
118         10    61028388       10509109   5499     TATAAAATGGYATCGTATATG   2.412           2.924      3.422      2.343      1.542      2.282           3.166      2.849      2.109      1.508      1.823                              2.412                            
118         10    61037137       12268265   5500     TTGAACTCCCYGATACCATTG   4.002           2.668      3.056      1.686      -          3.856           2.929      2.643      1.557      -          3.430                              4.002                            
118         10    61042363       11006601   5501     GTCTCCTTAGRAACACCTTGA   0.229           2.535      2.516      -          -          0.164           2.735      2.207      -          -          0.502                              0.229                            
118         10    61045646       10826327   5502     CAGTTGGTGGYCTGTTAGGAA   2.044           0.940      -          -          -          1.991           0.992      -          -          -          1.564                              2.044                            
118         10    61048410       4948234    5503     CAGTACCCACRTACAATAGAT   0.253           -          -          -          -          0.192           -          -          -          -          0.283                              0.253                            
119         11    4623790        7102992    5528     GTGGAAGTCAYGCTGGGGCTA   0.927           -          -          -          -          0.859           -          -          -          -          0.483                              0.927                            
119         11    4624170        1394713    5529     CTCATGGGTCRTCAGTGTTGG   2.824           1.934      -          -          -          2.750           2.211      -          -          -          2.483                              2.824                            
119         11    4630223        4910524    5530     AGAACAGTACRTCAGGATAGA   0.523           2.300      1.933      -          -          0.442           2.441      1.732      -          -          0.436                              0.523                            
119         11    4634804        12271352   5531     CTTAAAATACYCTTAATATTT   3.943           2.718      2.072      1.557      -          3.829           2.675      1.901      1.427      -          3.431                              3.943                            
119         11    4637043        10500611   5532     ACTTGTAAAAYGCATGAATTC   0.647           2.975      2.811      -          -          0.605           2.998      2.479      -          -          0.465                              0.647                            
119         11    4638952        10768157   5533     AGCGAGTCTAMGCCCCCTGTA   2.214           2.100      -          -          -          2.140           2.274      -          -          -          1.949                              2.214                            
119         11    4649555        4910663    5534     AGCCTTGGCTMCTGAGATAAT   0.031           -          -          -          -          0.000           -          -          -          -          0.032                              0.031                            
120         12    41216584       11181546   5701     TCACAGTCCCKTGTCCTGAAA   0.059           -          -          -          -          0.029           -          -          -          -          0.010                              0.059                            
120         12    41228501       1669947    5702     AGCATAAGTCRATATAGAAGA   1.266           1.302      -          -          -          1.186           1.305      -          -          -          0.760                              1.266                            
120         12    41230617       7975402    5703     CCCAAATGTCRTATTATAGGG   0.117           0.942      3.514      -          -          0.069           0.938      2.943      -          -          0.035                              0.117                            
120         12    41232552       2406870    5704     CCAGAGCCCCRAACAGAGCAA   0.234           3.549      5.048      4.166      -          0.176           3.598      3.738      3.367      -          0.085                              0.234                            
120         12    41237244       10785347   5705     TGAGTGCTACYCAATGACAGG   1.930           3.410      6.045      4.110      2.607      1.823           3.733      4.264      3.314      2.359      1.330                              1.930                            
120         12    41242440       2103410    5706     AACTCAATTCRAGGATGTAAA   3.868           3.067      4.943      3.828      3.034      3.756           3.658      3.581      3.104      2.564      3.235                              3.778                            
120         12    41243431       7955255    5707     AATGTTTAATYATCATGGGTA   4.045           3.363      2.624      3.395      -          3.891           3.718      2.305      2.740      -          3.422                              3.953                            
120         12    41254821       11181566   5708     TAAAAGTACARTATTTATACC   1.594           2.578      3.077      -          -          1.507           2.623      2.484      -          -          1.189                              1.594                            
120         12    41266756       11181569   5709     ACTTAATTACYGGAAAATACT   0.835           0.885      -          -          -          0.807           0.954      -          -          -          0.471                              0.835                            
120         12    41276912       12370911   5710     TATCATCTTTRATTTGCTGCC   0.290           -          -          -          -          0.258           -          -          -          -          0.184                              0.290                            
121         12    82056671       2056218    5714     GTAAAAGTGGMGCATAGAAGC   0.642           -          -          -          -          0.592           -          -          -          -          0.335                              0.649                            
121         12    82058474       7132550    5715     ATTATCTAGCKGGAAGATTGT   0.085           1.046      -          -          -          0.044           1.086      -          -          -          0.587                              0.085                            
121         12    82062811       10778943   5716     TGTACTAATGYGACAAAAAAG   2.469           1.104      3.863      -          -          2.368           1.163      3.384      -          -          1.971                              2.478                            
121         12    82065035       7956794    5717     TATTATTACTRTTGTTGTGGA   0.037           5.111      3.668      2.847      -          0.000           5.357      3.199      2.627      -          0.040                              0.037                            
121         12    82067077       4882436    5718     ATTTGTTAATYCCTTGCTCAT   4.859           3.351      4.399      2.629      -          4.697           3.412      3.738      2.412      -          4.327                              4.868                            
121         12    82075742       12825002   5719     ATTTTACTACRATCGATATTC   0.606           3.370      2.658      -          -          0.559           3.662      2.398      -          -          0.308                              0.606                            
121         12    82075857       12825227   5720     CTGCTAAGGTRCAGACACGGT   0.557           0.312      -          -          -          0.501           0.267      -          -          -          0.240                              0.528                            
121         12    82104115       12311028   5721     TTAGGAACTTRAAGAAATAGA   0.504           -          -          -          -          0.496           -          -          -          -          0.223                              0.505                            
122         12    114070824      254689     5735     TTTTATTTTCYAAAATTGGCA   0.892           -          -          -          -          0.851           -          -          -          -          0.581                              0.892                            
122         12    114072076      7966934    5736     AATCTTTTTARGGGCTAGGTA   0.591           2.782      -          -          -          0.548           2.785      -          -          -          0.309                              0.591                            
122         12    114076407      11067442   5737     GTTTCATTTAYGTATTGTTGC   3.968           2.893      2.448      -          -          3.866           3.081      2.230      -          -          3.461                              3.968                            
122         12    114086984      4099557    5738     ACCAATGGATRCAGACCAAAT   2.101           3.710      -          -          -          1.971           3.986      -          -          -          2.672                              2.101                            
122         12    114088285      10492265   5739     GGTTACACAAYTTCTAAGGGA   1.130           -          -          -          -          1.050           -          -          -          -          0.855                              1.130                            
123         13    86826376       9556720    5850     ACAGCAAAAAYACATTATAAA   0.490           -          -          -          -          0.450           -          -          -          -          0.461                              0.490                            
123         13    86828690       9516937    5851     CAGAAGGAAAYGATCAAGTCA   0.101           1.552      -          -          -          0.064           1.693      -          -          -          0.019                              0.093                            
123         13    86834119       7999681    5852     TGGAGAACTAYGAAGAACAGA   3.510           2.108      2.446      -          -          3.386           2.127      2.226      -          -          2.846                              3.510                            
123         13    86859029       7321756    5853     TTTTGTCATGRTTTCCAACGT   2.228           2.957      2.454      1.667      -          2.102           3.140      2.108      1.583      -          1.556                              2.228                            
123         13    86871161       4098587    5854     AGGTACCTTGYGTGGGTCACA   4.549           3.464      3.166      -          -          4.408           3.537      2.683      -          -          3.658                              4.542                            
123         13    86883000       10507966   5855     ATATTTCCACYGTGTTCTTGA   1.228           3.413      -          -          -          1.096           3.479      -          -          -          0.762                              1.228                            
123         13    86883956       4331219    5856     ATCACAACACRTTAAGGCCTT   2.100           -          -          -          -          2.022           -          -          -          -          1.547                              2.100                            
124         17    74016024       2120659    6094     GAATCCTGTCYGCTCAGACCC   0.074           -          -          -          -          0.038           -          -          -          -          0.009                              0.074                            
124         17    74019307       691043     6095     ATCGCTTCCAYGTCCCTTGTC   1.474           0.926      -          -          -          1.396           0.939      -          -          -          2.044                              1.474                            
124         17    74021584       12600766   6096     TGTATCCTTTRCAGCTAGGTG   2.424           1.700      2.901      -          -          2.314           1.744      2.663      -          -          1.724                              2.424                            
124         17    74023538       7350961    6097     GGTTGTTACCRCACAGTAACG   3.025           2.377      1.777      2.228      -          2.887           2.449      1.651      2.116      -          2.356                              3.025                            
124         17    74027315       4969218    6098     AGAGGATAGTRTGGAACTAGT   0.133           2.757      1.527      1.533      1.808      0.109           2.957      1.483      1.505      1.765      0.284                              0.133                            
124         17    74030083       590040     6099     TATGTGAGTGMAACTATTCTG   3.837           1.949      2.598      1.089      1.570      3.743           2.026      2.221      1.082      1.531      3.086                              3.837                            
124         17    74033121       642612     6100     CCTGAGAGTTYCTGATTTCCC   1.234           2.302      1.441      1.385      -          1.206           2.331      1.399      1.353      -          0.817                              1.234                            
124         17    74033232       17729319   6101     AGGAAAAATCYGTAGTGTCCT   0.508           1.561      1.115      -          -          0.444           1.595      1.081      -          -          0.271                              0.473                            
124         17    74043209       7217236    6102     AAGCACACGCRTACACACACG   1.715           1.545      -          -          -          1.634           1.572      -          -          -          1.783                              1.715                            
124         17    74044419       9904144    6103     TCTTGGCATCRTGTCGGGGGG   0.131           -          -          -          -          0.086           -          -          -          -          0.588                              0.131                            
109         18    71669732       1380716    6233     ATTTGATTCTMTTTTTGACTC   0.154           -          -          -          -          0.124           -          -          -          -          0.048                              0.154                            
109         18    71677306       8096931    6234     CTTAAACTCCRCTAAAGAGCA   1.683           1.590      -          -          -          1.596           1.743      -          -          -          1.072                              1.683                            
109         18    71678951       9959259    6235     CATTCCTTTARGGTATTTATG   0.606           0.872      1.023      -          -          0.551           0.982      1.037      -          -          0.924                              0.606                            
109         18    71684105       2612391    6236     ACCCTTCTCCKAATGGTGTTT   1.351           0.661      1.586      6.671      -          1.265           0.739      1.475      5.553      -          0.905                              1.351                            
109         18    71686018       2612390    6237     GGGTCCATCCYCAAGAACATC   0.413           1.753      5.163      6.378      5.462      0.354           1.972      4.502      5.456      4.747      0.779                              0.413                            
109         18    71694875       12454238   6238     AGGGCTTTACYACCTTCCAAT   0.618           2.355      4.598      7.547      8.403      0.577           2.474      3.912      7.500      6.699      0.327                              0.618                            
109         18    71703391       7241677    6239     GAACCAGAGGRTGGAGCAATA   2.883           2.278      1.616      5.010      8.859      2.797           2.471      1.542      4.245      6.699      2.676                              2.883                            
109         18    71703488       12458666   6240     AAGCATGGCTYGGCCATACTT   0.045           1.990      1.160      1.644      -          0.000           2.086      1.119      1.555      -          0.148                              0.045                            
109         18    71720326       1870591    6241     CTTGTGTTAAKTGAGTAGGTC   2.042           1.152      1.584      -          -          1.925           1.256      1.478      -          -          1.620                              2.042                            
109         18    71720859       898484     6242     GGAAGGGGAGYCTTTGGCCTT   1.442           1.339      -          -          -          1.407           1.487      -          -          -          1.470                              1.442                            
109         18    71722508       8087536    6243     CTTTTGCAGCRTAACCTTCGT   0.392           -          -          -          -          0.333           -          -          -          -          0.306                              0.392                            
125         19    8240280        250508     6254     AAGCCGTTGAYCTCTCCAAGA   2.574           -          -          -          -          2.504           -          -          -          -          2.170                              2.574                            
125         19    8240939        638966     6255     TGCTAACATCMAGGAATTACT   2.574           4.182      -          -          -          2.487           4.198      -          -          -          2.170                              2.574                            
125         19    8241689        7250584    6256     AAAACTTGCAYCAAGAGGTAC   4.153           3.152      3.299      -          -          4.030           3.251      2.896      -          -          3.157                              4.153                            
125         19    8276921        2927707    6257     ACCTATCACTYTCCCCATCCT   0.546           2.266      -          -          -          0.492           2.506      -          -          -          0.339                              0.546                            
125         19    8282431        561        6258     ACCTCTTTATRGGAGGAGCTG   0.426           -          -          -          -          0.413           -          -          -          -          0.418                              0.426                            
