                         SEQUENCE LISTING

<110>  Thomson, James
       Yu, Junying
 
<120>  SOMATIC CELL REPROGRAMMING

<130>  960296.00652

<150>  US 60/919,687
<151>  2007-03-23

<150>  US 60/974,980
<151>  2007-09-25

<150>  US 60/989,058
<151>  2007-11-19

<160>  13    

<170>  PatentIn version 3.3

<210>  1
<211>  480
<212>  DNA
<213>  Stella

<400>  1
atggacccat cacagtttaa tccaacctac atcccagggt ctccacaaat gctcaccgaa     60

gaaaattccc gggacgattc aggggcctct caaatctcct ccgagacgtt gataaagaac    120

cttagtaact tgactatcaa cgctagtagc gaatctgttt cccctctatc ggaagcttta    180

ctccgtcgag agtctgtagg agcagcagtc ctcagggaaa tcgaagatga gtggctttac    240

agcaggagag gagtaagaac attgctgtct gtgcagagag aaaagatggc aagattgaga    300

tacatgttac tcggcggagt tcgtacgcat gaaagaagac caacaaacaa ggagcctaag    360

ggagttaaga aggaatcaag accattcaaa tgtccctgca gtttctgcgt gtctaatgga    420

tgggatcctt ctgagaatgc tagaataggg aatcaagaca ccaagccact tcagccataa    480


<210>  2
<211>  1083
<212>  DNA
<213>  Oct-4

<400>  2
atggcgggac acctggcttc ggatttcgcc ttctcgcccc ctccaggtgg tggaggtgat     60

gggccagggg ggccggagcc gggctgggtt gatcctcgga cctggctaag cttccaaggc    120

cctcctggag ggccaggaat cgggccgggg gttgggccag gctctgaggt gtgggggatt    180

cccccatgcc ccccgccgta tgagttctgt ggggggatgg cgtactgtgg gccccaggtt    240

ggagtggggc tagtgcccca aggcggcttg gagacctctc agcctgaggg cgaagcagga    300

gtcggggtgg agagcaactc cgatggggcc tccccggagc cctgcaccgt cacccctggt    360

gccgtgaagc tggagaagga gaagctggag caaaacccgg aggagtccca ggacatcaaa    420

gctctgcaga aagaactcga gcaatttgcc aagctcctga agcagaagag gatcaccctg    480

ggatatacac aggccgatgt ggggctcacc ctgggggttc tatttgggaa ggtattcagc    540

caaacgacca tctgccgctt tgaggctctg cagcttagct tcaagaacat gtgtaagctg    600

cggcccttgc tgcagaagtg ggtggaggaa gctgacaaca atgaaaatct tcaggagata    660

tgcaaagcag aaaccctcgt gcaggcccga aagagaaagc gaaccagtat cgagaaccga    720

gtgagaggca acctggagaa tttgttcctg cagtgcccga aacccacact gcagcagatc    780

agccacatcg cccagcagct tgggctcgag aaggatgtgg tccgagtgtg gttctgtaac    840

cggcgccaga agggcaagcg atcaagcagc gactatgcac aacgagagga ttttgaggct    900

gctgggtctc ctttctcagg gggaccagtg tcctttcctc tggccccagg gccccatttt    960

ggtaccccag gctatgggag ccctcacttc actgcactgt actcctcggt ccctttccct   1020

gagggggaag cctttccccc tgtctccgtc accactctgg gctctcccat gcattcaaac   1080

tga                                                                 1083


<210>  3
<211>  954
<212>  DNA
<213>  Sox2

<400>  3
atgtacaaca tgatggagac ggagctgaag ccgccgggcc cgcagcaaac ttcggggggc     60

ggcggcggca actccaccgc ggcggcggcc ggcggcaacc agaaaaacag cccggaccgc    120

gtcaagcggc ccatgaatgc cttcatggtg tggtcccgcg ggcagcggcg caagatggcc    180

caggagaacc ccaagatgca caactcggag atcagcaagc gcctgggcgc cgagtggaaa    240

cttttgtcgg agacggagaa gcggccgttc atcgacgagg ctaagcggct gcgagcgctg    300

cacatgaagg agcacccgga ttataaatac cggccccggc ggaaaaccaa gacgctcatg    360

aagaaggata agtacacgct gcccggcggg ctgctggccc ccggcggcaa tagcatggcg    420

agcggggtcg gggtgggcgc cggcctgggc gcgggcgtga accagcgcat ggacagttac    480

gcgcacatga acggctggag caacggcagc tacagcatga tgcaggacca gctgggctac    540

ccgcagcacc cgggcctcaa tgcgcacggc gcagcgcaga tgcagcccat gcaccgctac    600

gacgtgagcg ccctgcagta caactccatg accagctcgc agacctacat gaacggctcg    660

cccacctaca gcatgtccta ctcgcagcag ggcacccctg gcatggctct tggctccatg    720

ggttcggtgg tcaagtccga ggccagctcc agcccccctg tggttacctc ttcctcccac    780

tccagggcgc cctgccaggc cggggacctc cgggacatga tcagcatgta tctccccggc    840

gccgaggtgc cggaacccgc cgcccccagc agacttcaca tgtcccagca ctaccagagc    900

ggcccggtgc ccggcacggc cattaacggc acactgcccc tctcacacat gtga          954


<210>  4
<211>  630
<212>  DNA
<213>  Lin28

<400>  4
atgggctccg tgtccaacca gcagtttgca ggtggctgcg ccaaggcggc agaagaggcg     60

cccgaggagg cgccggagga cgcggcccgg gcggcggacg agcctcagct gctgcacggt    120

gcgggcatct gtaagtggtt caacgtgcgc atggggttcg gcttcctgtc catgaccgcc    180

cgcgccgggg tcgcgctcga ccccccagtg gatgtctttg tgcaccagag taagctgcac    240

atggaagggt tccggagctt gaaggagggt gaggcagtgg agttcacctt taagaagtca    300

gccaagggtc tggaatccat ccgtgtcacc ggacctggtg gagtattctg tattgggagt    360

gagaggcggc caaaaggaaa gagcatgcag aagcgcagat caaaaggaga caggtgctac    420

aactgtggag gtctagatca tcatgccaag gaatgcaagc tgccacccca gcccaagaag    480

tgccacttct gccagagcat cagccatatg gtagcctcat gtccgctgaa ggcccagcag    540

ggccctagtg cacagggaaa gccaacctac tttcgagagg aagaagaaga aatccacagc    600

cctaccctgc tcccggaggc acagaattga                                     630


<210>  5
<211>  918
<212>  DNA
<213>  Nanog

<400>  5
atgagtgtgg atccagcttg tccccaaagc ttgccttgct ttgaagcatc cgactgtaaa     60

gaatcttcac ctatgcctgt gatttgtggg cctgaagaaa actatccatc cttgcaaatg    120

tcttctgctg agatgcctca cacggagact gtctctcctc ttccctcctc catggatctg    180

cttattcagg acagccctga ttcttccacc agtcccaaag gcaaacaacc cacttctgca    240

gagaatagtg tcgcaaaaaa ggaagacaag gtcccagtca agaaacagaa gaccagaact    300

gtgttctctt ccacccagct gtgtgtactc aatgatagat ttcagagaca gaaatacctc    360

agcctccagc agatgcaaga actctccaac atcctgaacc tcagctacaa acaggtgaag    420

acctggttcc agaaccagag aatgaaatct aagaggtggc agaaaaacaa ctggccgaag    480

aatagcaatg gtgtgacgca gaaggcctca gcacctacct accccagcct ctactcttcc    540

taccaccagg gatgcctggt gaacccgact gggaaccttc caatgtggag caaccagacc    600

tggaacaatt caacctggag caaccagacc cagaacatcc agtcctggag caaccactcc    660

tggaacactc agacctggtg cacccaatcc tggaacaatc aggcctggaa cagtcccttc    720

tataactgtg gagaggaatc tctgcagtcc tgcatgcagt tccagccaaa ttctcctgcc    780

agtgacttgg aggctgcttt ggaagctgct ggggaaggcc ttaatgtaat acagcagacc    840

actaggtatt ttagtactcc acaaaccatg gatttattcc taaactactc catgaacatg    900

caacctgaag acgtgtga                                                  918


<210>  6
<211>  8060
<212>  DNA
<213>  Lentivirus harboring Stella


<220>
<221>  misc_feature
<222>  (3604)..(4083)
<223>  Sequence for Stella

<400>  6
cggaccgcca ctgccaatta cctgtggttt catttactct aaacctgtga ttcctctgaa     60

ttattttcat tttaaagaaa ttgtatttgt taaatatgta ctacaaactt agtagttgga    120

agggctaatt cactcccaaa gaagacaaga tatccttgat ctgtggatct accacacaca    180

aggctacttc cctgattagc agaactacac accagggcca ggggtcagat atccactgac    240

ctttggatgg tgctacaagc tagtaccagt tgagccagat aaggtagaag aggccaataa    300

aggagagaac accagcttgt tacaccctgt gagcctgcat gggatggatg acccggagag    360

agaagtgtta gagtggaggt ttgacagccg cctagcattt catcacgtgg cccgagagct    420

gcatccggag tacttcaaga actgctgata tcgagcttgc tacaagggac tttccgctgg    480

ggactttcca gggaggcgtg gcctgggcgg gactggggag tggcgagccc tcagatcctg    540

catataagca gctgcttttt gcctgtactg ggtctctctg gttagaccag atctgagcct    600

gggagctctc tggctaacta gggaacccac tgcttaagcc tcaataaagc ttgccttgag    660

tgcttcaagt agtgtgtgcc cgtctgttgt gtgactctgg taactagaga tccctcagac    720

ccttttagtc agtgtggaaa atctctagca gtggcgcccg aacagggact tgaaagcgaa    780

agggaaacca gaggagctct ctcgacgcag gactcggctt gctgaagcgc gcacggcaag    840

aggcgagggg cggcgactgg tgagtacgcc aaaaattttg actagcggag gctagaagga    900

gagagatggg tgcgagagcg tcagtattaa gcgggggaga attagatcgc gatgggaaaa    960

aattcggtta aggccagggg gaaagaaaaa atataaatta aaacatatag tatgggcaag   1020

cagggagcta gaacgattcg cagttaatcc tggcctgtta gaaacatcag aaggctgtag   1080

acaaatactg ggacagctac aaccatccct tcagacagga tcagaagaac ttagatcatt   1140

atataataca gtagcaaccc tctattgtgt gcatcaaagg atagagataa aagacaccaa   1200

ggaagcttta gacaagatag aggaagagca aaacaaaagt aagaccaccg cacagcaagc   1260

ggccgctgat cttcagacct ggaggaggag atatgaggga caattggaga agtgaattat   1320

ataaatataa agtagtaaaa attgaaccat taggagtagc acccaccaag gcaaagagaa   1380

gagtggtgca gagagaaaaa agagcagtgg gaataggagc tttgttcctt gggttcttgg   1440

gagcagcagg aagcactatg ggcgcagcgt caatgacgct gacggtacag gccagacaat   1500

tattgtctgg tatagtgcag cagcagaaca atttgctgag ggctattgag gcgcaacagc   1560

atctgttgca actcacagtc tggggcatca agcagctcca ggcaagaatc ctggctgtgg   1620

aaagatacct aaaggatcaa cagctcctgg ggatttgggg ttgctctgga aaactcattt   1680

gcaccactgc tgtgccttgg aatgctagtt ggagtaataa atctctggaa cagatttgga   1740

atcacacgac ctggatggag tgggacagag aaattaacaa ttacacaagc ttaatacact   1800

ccttaattga agaatcgcaa aaccagcaag aaaagaatga acaagaatta ttggaattag   1860

ataaatgggc aagtttgtgg aattggttta acataacaaa ttggctgtgg tatataaaat   1920

tattcataat gatagtagga ggcttggtag gtttaagaat agtttttgct gtactttcta   1980

tagtgaatag agttaggcag ggatattcac cattatcgtt tcagacccac ctcccaaccc   2040

cgaggggacc cgacaggccc gaaggaatag aagaagaagg tggagagaga gacagagaca   2100

gatccattcg attagtgaac ggatctcgac ggtatcgcca caaatggcag tattcatcca   2160

caattttaaa agaaaggggg ggattggggg gtacagtgca ggggaaagaa tagtagacat   2220

aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaaa ttcaaaattt   2280

tcgggtttat tacagggaca gcagagatcc actttggtcg ataagctttg caaagatgga   2340

taaagtttta aacagagagg aatctttgca gctaatggac cttctaggtc ttgaaaggag   2400

tgggaattgg ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga   2460

agttgggggg aggggtcggc aattgaaccg gtgcctagag aaggtggcgc ggggtaaact   2520

gggaaagtga tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata   2580

taagtgcagt agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagg   2640

taagtgccgt gtgtggttcc cgcgggcctg gcctctttac gggttatggc ccttgcgtgc   2700

cttgaattac ttccacctgg ctgcagtacg tgattcttga tcccgagctt cgggttggaa   2760

gtgggtggga gagttcgagg ccttgcgctt aaggagcccc ttcgcctcgt gcttgagttg   2820

aggcctggcc tgggcgctgg ggccgccgcg tgcgaatctg gtggcacctt cgcgcctgtc   2880

tcgctgcttt cgataagtct ctagccattt aaaatttttg atgacctgct gcgacgcttt   2940

ttttctggca agatagtctt gtaaatgcgg gccaagatct gcacactggt atttcggttt   3000

ttggggccgc gggcggcgac ggggcccgtg cgtcccagcg cacatgttcg gcgaggcggg   3060

gcctgcgagc gcggccaccg agaatcggac gggggtagtc tcaagctggc cggcctgctc   3120

tggtgcctgg cctcgcgccg ccgtgtatcg ccccgccctg ggcggcaagg ctggcccggt   3180

cggcaccagt tgcgtgagcg gaaagatggc cgcttcccgg ccctgctgca gggagctcaa   3240

aatggaggac gcggcgctcg ggagagcggg cgggtgagtc acccacacaa aggaaaaggg   3300

cctttccgtc ctcagccgtc gcttcatgtg actccacgga gtaccgggcg ccgtccaggc   3360

acctcgatta gttctcgagc ttttggagta cgtcgtcttt aggttggggg gaggggtttt   3420

atgcgatgga gtttccccac actgagtggg tggagactga agttaggcca gcttggcact   3480

tgatgtaatt ctccttggaa tttgcccttt ttgagtttgg atcttggttc attctcaagc   3540

ctcagacagt ggttcaaagt ttttttcttc catttcaggt gtcgtgagga attcgcgatc   3600

gccatggacc catcacagtt taatccaacc tacatcccag ggtctccaca aatgctcacc   3660

gaagaaaatt cccgggacga ttcaggggcc tctcaaatct cctccgagac gttgataaag   3720

aaccttagta acttgactat caacgctagt agcgaatctg tttcccctct atcggaagct   3780

ttactccgtc gagagtctgt aggagcagca gtcctcaggg aaatcgaaga tgagtggctt   3840

tacagcagga gaggagtaag aacattgctg tctgtgcaga gagaaaagat ggcaagattg   3900

agatacatgt tactcggcgg agttcgtacg catgaaagaa gaccaacaaa caaggagcct   3960

aagggagtta agaaggaatc aagaccattc aaatgtccct gcagtttctg cgtgtctaat   4020

ggatgggatc cttctgagaa tgctagaata gggaatcaag acaccaagcc acttcagcca   4080

taataggttt aaacatcgat ggcctcgaga aagcggccgc ccccacgcgt aaactagttc   4140

gaaggatccg catgcatcta gggcggccaa ttccgcccct ctccctcccc cccccctaac   4200

gttactggcc gaagccgctt ggaataaggc cggtgtgcgt ttgtctatat gtgattttcc   4260

accatattgc cgtcttttgg caatgtgagg gcccggaaac ctggccctgt cttcttgacg   4320

agcattccta ggggtctttc ccctctcgcc aaaggaatgc aaggtctgtt gaatgtcgtg   4380

aaggaagcag ttcctctgga agcttcttga agacaaacaa cgtctgtagc gaccctttgc   4440

aggcagcgga accccccacc tggcgacagg tgcctctgcg gccaaaagcc acgtgtataa   4500

gatacacctg caaaggcggc acaaccccag tgccacgttg tgagttggat agttgtggaa   4560

agagtcaaat ggctctcctc aagcgtattc aacaaggggc tgaaggatgc ccagaaggta   4620

ccccattgta tgggatctga tctggggcct cggtgcacat gctttacatg tgtttagtcg   4680

aggttaaaaa aacgtctagg ccccccgaac cacggggacg tggttttcct ttgaaaaaca   4740

cgatgataag cttgccacaa cccacaagga gacgaccttc catgaccgag tacaagccca   4800

cggtgcgcct cgccacccgc gacgacgtcc cccgggccgt acgcaccctc gccgccgcgt   4860

tcgccgacta ccccgccacg cgccacaccg tcgacccgga ccgccacatc gagcgggtca   4920

ccgagctgca agaactcttc ctcacgcgcg tcgggctcga catcggcaag gtgtgggtcg   4980

cggacgacgg cgccgcggtg gcggtctgga ccacgccgga gagcgtcgaa gcgggggcgg   5040

tgttcgccga gatcggcccg cgcatggccg agttgagcgg ttcccggctg gccgcgcagc   5100

aacagatgga aggcctcctg gcgccgcacc ggcccaagga gcccgcgtgg ttcctggcca   5160

ccgtcggcgt ctcgcccgac caccagggca agggtctggg cagcgccgtc gtgctccccg   5220

gagtggaggc ggccgagcgc gccggggtgc ccgccttcct ggagacctcc gcgccccgca   5280

acctcccctt ctacgagcgg ctcggcttca ccgtcaccgc cgacgtcgag tgcccgaagg   5340

accgcgcgac ctggtgcatg acccgcaagc ccggtgcctg ataataggcg gccgctcgag   5400

acctagaaaa acatggagca atcacaagta gcaatacagc agctaccaat gctgattgtg   5460

cctggctaga agcacaagag gaggaggagg tgggttttcc agtcacacct caggtacctt   5520

taagaccaat gacttacaag gcagctgtag atcttagcca ctttttaaaa gaaaaggggg   5580

gactggaagg gctaattcac tcccaacgaa gacaagatct gctttttgct tgtactgggt   5640

ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc   5700

ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg   5760

actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagcagta   5820

gtagttcatg tcatcttatt attcagtatt tataacttgc aaagaaatga atatcagaga   5880

gtgagaggcc ttgacattat aatagattta gcaggaattg aactaggagt ggagcacaca   5940

ggcaaagttc tagagctcgc tgatcagcct cgactgtgcc ttctagttgc cagccatctg   6000

ttgtttgccc ctcccccgtg ccttccttga ccctggaagg tgccactccc actgtccttt   6060

cctaataaaa tgaggaaatt gcatcgcatt gtctgagtag gtgtcattct attctggggg   6120

gtggggtggg gcaggacagc aagggggagg attgggaaga caatagcagg catgctgggg   6180

atgcggtggg ctctatggct tctgaggcgg aaagaaccag ctgggggcgc gcccctcgag   6240

gccgccatgg tcatagctgt ttgacgtcag gtggcacttt tcggggaaat gtgcgcggaa   6300

cccctatttg tttatttttc taaatacatt caaatatgta tccgctcatg agacaataac   6360

cctgataaat gcttcaataa tattgaaaaa ggaagagtat gagtattcaa catttccgtg   6420

tcgcccttat tccctttttt gcggcatttt gccttcctgt ttttgctcac ccagaaacgc   6480

tggtgaaagt aaaagatgct gaagatcagt tgggtgcacg agtgggttac atcgaactgg   6540

atctcaacag cggtaagatc cttgagagtt ttcgccccga agaacgtttt ccaatgatga   6600

gcacttttaa agttctgcta tgtggcgcgg tattatcccg tattgacgcc gggcaagagc   6660

aactcggtcg ccgcatacac tattctcaga atgacttggt tgagtactca ccagtcacag   6720

aaaagcatct tacggatggc atgacagtaa gagaattatg cagtgctgcc ataaccatga   6780

gtgataacac tgcggccaac ttacttctga caacgatcgg aggaccgaag gagctaaccg   6840

cttttttgca caacatgggg gatcatgtaa ctcgccttga tcgttgggaa ccggagctga   6900

atgaagccat accaaacgac gagcgtgaca ccacgatgcc tgtagcaatg gcaacaacgt   6960

tgcgcaaact attaactggc gaactactta ctctagcttc ccggcaacaa ttaatagact   7020

ggatggaggc ggataaagtt gcaggaccac ttctgcgctc ggcccttccg gctggctggt   7080

ttattgctga taaatctgga gccggtgagc gtgggtctcg cggtatcatt gcagcactgg   7140

ggccagatgg taagccctcc cgtatcgtag ttatctacac gacggggagt caggcaacta   7200

tggatgaacg aaatagacag atcgctgaga taggtgcctc actgattaag cattggtaac   7260

tgtcagacca agtttactca tatatacttt agattgattt aaaacttcat ttttaattta   7320

aaaggatcta ggtgaagatc ctttttgata atctcatgac caaaatccct taacgtgagt   7380

tttcgttcca ctgagcgtca gaccccgtag aaaagatcaa aggatcttct tgagatcctt   7440

tttttctgcg cgtaatctgc tgcttgcaaa caaaaaaacc accgctacca gcggtggttt   7500

gtttgccgga tcaagagcta ccaactcttt ttccgaaggt aactggcttc agcagagcgc   7560

agataccaaa tactgtcctt ctagtgtagc cgtagttagg ccaccacttc aagaactctg   7620

tagcaccgcc tacatacctc gctctgctaa tcctgttacc agtggctgct gccagtggcg   7680

ataagtcgtg tcttaccggg ttggactcaa gacgatagtt accggataag gcgcagcggt   7740

cgggctgaac ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgaac   7800

tgagatacct acagcgtgag cattgagaaa gcgccacgct tcccgaaggg agaaaggcgg   7860

acaggtatcc ggtaagcggc agggtcggaa caggagagcg cacgagggag cttccagggg   7920

gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat   7980

ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa cgccagcaac gcggcctttt   8040

tacggttcct ggccttttgc                                               8060


<210>  7
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  7
cagtgcccga aacccacac                                                  19


<210>  8
<211>  24
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  8
agaggaactg cttccttcac gaca                                            24


<210>  9
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  9
cagaaggcct cagcacctac                                                 20


<210>  10
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  10
tacctcttcc tcccactcca                                                 20


<210>  11
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  11
aagcgcagat caaaaggaga                                                 20


<210>  12
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  12
agtttgtgcc agggtttttg                                                 20


<210>  13
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetic oligonucleotide

<400>  13
acttcacctt ccctccaacc                                                 20


