Table 16.3. List of significantly associated haplotypes based on the schizophrenia Disease GWS
results using the Quebec Founder Population (QFP). Individual haplotypes with associated relative
risks are presented in each row of the table; these values were extracted from the associated
marker haplotype window with the most significant p value for each SNP in Table 16.2. The first
column lists the region ID as presented in Table 1. The Haplotype column lists the specific
nucleotides for the individual SNP alleles contributing to the haplotype reported. The Case and
Control columns correspond to the numbers of cases and controls, respectively, containing the
haplotype variant noted in the Haplotype column. The Total Case and Total Control columns list the
total numbers of cases and controls for which genotype data was available for the haplotype in
question. The RR column gives to the relative risk for each particular haplotype. The remainder of
the columns lists the SeqIDs for the SNPs contributing to the haplotype and their relative location
with respect to the central marker. The Central marker (0) column lists the SeqID for the central
marker on which the haplotype is based. Flanking markers are identified by minus (-) or plus (+)
signs to indicate the relative location of flanking SNPs.

Region   Haplotype   Case   Control   TotalCase   TotalControl   RR      Central Marker (-4)   Central Marker (-3)   Central Marker (-2)   Central Marker (-1)   Central Marker (0)   Central Marker (1)   Central Marker (2)   Central Marker (3)   Central Marker (4)   
484      C           254    300       508         508            0.690                                                                                           12095                
484      T           254    208       508         508            1.440                                                                                           12095                
484      C           416    398       508         508            1.250                                                                                           12096                
484      T           92     110       508         508            0.800                                                                                           12096                
484      C           248    197       508         508            1.510                                                                                           12097                
484      A           260    311       508         508            0.660                                                                                           12097                
484      C           340    402       508         508            0.530                                                                                           12098                
484      T           168    106       508         508            1.870                                                                                           12098                
484      G           479    465       508         508            1.530                                                                                           12100                
484      A           29     43        508         508            0.650                                                                                           12100                
485      TGG         58     18        508         508            3.510                                                                     12716                 12717                12718                
485      TGA         331    366       508         508            0.730                                                                     12716                 12717                12718                
485      G           59     19        508         508            3.380                                                                                           12718                
485      A           449    489       508         508            0.300                                                                                           12718                
485      ATT         18     35        508         508            0.500                                                                     12718                 12719                12720                
485      AGT         4      10        508         508            0.400                                                                     12718                 12719                12720                
485      AGC         77     91        508         508            0.820                                                                     12718                 12719                12720                
485      GTT         49     17        508         508            3.080                                                                     12718                 12719                12720                
485      GTC         9      2         508         508            4.560                                                                     12718                 12719                12720                
485      AGCGC       70     85        508         508            0.800                                               12718                 12719                 12720                12721                12722                
485      GTTGT       49     17        508         508            3.080                                               12718                 12719                 12720                12721                12722                
485      ATTGC       16     30        508         508            0.520                                               12718                 12719                 12720                12721                12722                
485      AGTGCCG     3      7         508         508            0.430                         12718                 12719                 12720                 12721                12722                12723                12724                
485      GTTGTCG     45     15        508         508            3.190                         12718                 12719                 12720                 12721                12722                12723                12724                
485      AGCGCCG     65     80        508         508            0.780                         12718                 12719                 12720                 12721                12722                12723                12724                
485      ATTGCCG     17     30        508         508            0.550                         12718                 12719                 12720                 12721                12722                12723                12724                
485      ATCGCCA     58     73        508         508            0.770                         12718                 12719                 12720                 12721                12722                12723                12724                
485      AGCTCTA     7      3         508         508            2.350                         12718                 12719                 12720                 12721                12722                12723                12724                
485      ATCGCCATC   11     19        508         508            0.570   12718                 12719                 12720                 12721                 12722                12723                12724                12725                12726                
485      AGCTCTATC   7      3         508         508            2.350   12718                 12719                 12720                 12721                 12722                12723                12724                12725                12726                
485      GTTGTCGTC   46     15        508         508            3.270   12718                 12719                 12720                 12721                 12722                12723                12724                12725                12726                
485      ATTGCCGTT   18     32        508         508            0.550   12718                 12719                 12720                 12721                 12722                12723                12724                12725                12726                
485      AGCGCCGTC   67     82        508         508            0.790   12718                 12719                 12720                 12721                 12722                12723                12724                12725                12726                
485      TGTCGTC     48     23        508         508            2.200                         12720                 12721                 12722                 12723                12724                12725                12726                
485      TGCCGTT     19     37        508         508            0.490                         12720                 12721                 12722                 12723                12724                12725                12726                
485      TCGTC       48     21        508         508            2.420                                               12722                 12723                 12724                12725                12726                
485      CCGTT       19     37        508         508            0.490                                               12722                 12723                 12724                12725                12726                
485      GTT         19     37        508         508            0.490                                                                     12724                 12725                12726                
485      T           20     37        508         508            0.520                                                                                           12726                
485      C           488    471       508         508            1.920                                                                                           12726                
487      CGA         101    137       508         508            0.670                                                                     12957                 12958                12959                
487      TGA         251    226       508         508            1.220                                                                     12957                 12958                12959                
487      TAAAC       11     6         508         508            1.850                                               12957                 12958                 12959                12960                12961                
487      TAAGA       15     36        508         508            0.400                                               12957                 12958                 12959                12960                12961                
487      TAAGC       84     53        508         508            1.700                                               12957                 12958                 12959                12960                12961                
487      TGAGA       5      11        508         508            0.450                                               12957                 12958                 12959                12960                12961                
487      TGAGC       172    144       508         508            1.290                                               12957                 12958                 12959                12960                12961                
487      CGAAC       7      14        508         508            0.490                                               12957                 12958                 12959                12960                12961                
487      CGAGA       19     42        508         508            0.430                                               12957                 12958                 12959                12960                12961                
487      AAACG       11     5         508         508            2.230                                               12958                 12959                 12960                12961                12962                
487      AAGAG       14     36        508         508            0.370                                               12958                 12959                 12960                12961                12962                
487      AAGCG       48     34        508         508            1.450                                               12958                 12959                 12960                12961                12962                
487      AAGCT       36     18        508         508            2.080                                               12958                 12959                 12960                12961                12962                
487      GAGAG       24     51        508         508            0.440                                               12958                 12959                 12960                12961                12962                
487      A           39     89        508         508            0.390                                                                                           12961                
487      C           469    419       508         508            2.550                                                                                           12961                
487      AGA         14     33        508         508            0.410                                                                     12961                 12962                12963                
487      AGG         24     56        508         508            0.400                                                                     12961                 12962                12963                
487      CTG         131    102       508         508            1.380                                                                     12961                 12962                12963                
487      CGG         335    310       508         508            1.240                                                                     12961                 12962                12963                
487      AGGGC       9      37        508         508            0.230                                               12961                 12962                 12963                12964                12965                
487      CTGAT       34     23        508         508            1.510                                               12961                 12962                 12963                12964                12965                
487      CTGGT       45     32        508         508            1.450                                               12961                 12962                 12963                12964                12965                
487      AGAGC       13     31        508         508            0.400                                               12961                 12962                 12963                12964                12965                
487      AGC         17     38        508         508            0.430                                                                     12963                 12964                12965                
487      C           365    387       508         508            0.800                                                                                           12965                
487      T           143    121       508         508            1.250                                                                                           12965                
488      CTTGAGT     167    102       508         508            1.950                         13189                 13190                 13191                 13192                13193                13194                13195                
488      TTTGCAC     88     106       508         508            0.790                         13189                 13190                 13191                 13192                13193                13194                13195                
488      TTCGAGC     77     106       508         508            0.680                         13189                 13190                 13191                 13192                13193                13194                13195                
488      TGCAC       90     109       508         508            0.790                                               13191                 13192                 13193                13194                13195                
488      TGAGT       170    110       508         508            1.820                                               13191                 13192                 13193                13194                13195                
488      CGAGC       77     106       508         508            0.680                                               13191                 13192                 13193                13194                13195                
488      GAGTC       172    110       508         508            1.850                                               13192                 13193                 13194                13195                13196                
488      GAGCT       120    162       508         508            0.660                                               13192                 13193                 13194                13195                13196                
488      GCACC       90     110       508         508            0.780                                               13192                 13193                 13194                13195                13196                
488      C           336    398       508         508            0.540                                                                                           13195                
488      T           172    110       508         508            1.850                                                                                           13195                
488      CTA         112    152       508         508            0.660                                                                     13195                 13196                13197                
488      CCA         106    123       508         508            0.830                                                                     13195                 13196                13197                
488      TCG         172    110       508         508            1.850                                                                     13195                 13196                13197                
488      A           218    275       508         508            0.640                                                                                           13197                
488      G           290    233       508         508            1.570                                                                                           13197                
488      GGG         267    207       508         508            1.610                                                                     13197                 13198                13199                
488      AGA         110    132       508         508            0.790                                                                     13197                 13198                13199                
488      AAG         73     107       508         508            0.630                                                                     13197                 13198                13199                
488      GGT         156    106       508         508            1.680                                                                     13198                 13199                13200                
488      AGC         80     114       508         508            0.650                                                                     13198                 13199                13200                
488      GAC         126    151       508         508            0.780                                                                     13198                 13199                13200                
488      T           156    106       508         508            1.680                                                                                           13200                
488      C           352    402       508         508            0.590                                                                                           13200                
488      TAC         39     28        508         508            1.430                                                                     13200                 13201                13202                
488      TAT         105    70        508         508            1.630                                                                     13200                 13201                13202                
488      CAC         106    148       508         508            0.640                                                                     13200                 13201                13202                
488      CGT         20     31        508         508            0.630                                                                     13200                 13201                13202                
488      C           278    311       508         508            0.770                                                                                           13202                
488      T           230    197       508         508            1.310                                                                                           13202                
489      TGAGGTA     119    99        508         508            1.260                         13747                 13748                 13749                 13750                13751                13752                13753                
489      TGGAATA     43     33        508         508            1.330                         13747                 13748                 13749                 13750                13751                13752                13753                
489      TGGAGTA     135    113       508         508            1.270                         13747                 13748                 13749                 13750                13751                13752                13753                
489      TGAGGTG     2      10        508         508            0.200                         13747                 13748                 13749                 13750                13751                13752                13753                
489      TGGAGTG     11     23        508         508            0.470                         13747                 13748                 13749                 13750                13751                13752                13753                
489      TGGAGCG     34     63        508         508            0.510                         13747                 13748                 13749                 13750                13751                13752                13753                
489      GAGTA       136    113       508         508            1.280                                               13749                 13750                 13751                13752                13753                
489      GAGTG       11     23        508         508            0.470                                               13749                 13750                 13751                13752                13753                
489      GAGCG       34     66        508         508            0.480                                               13749                 13750                 13751                13752                13753                
489      AGGTG       2      12        508         508            0.160                                               13749                 13750                 13751                13752                13753                
489      AGGTA       267    240       508         508            1.240                                               13749                 13750                 13751                13752                13753                
489      GAATA       45     33        508         508            1.400                                               13749                 13750                 13751                13752                13753                
489      AGGCG       4      9         508         508            0.440                                               13749                 13750                 13751                13752                13753                
489      GCG         41     78        508         508            0.480                                                                     13751                 13752                13753                
489      ATA         45     33        508         508            1.400                                                                     13751                 13752                13753                
489      GTA         403    353       508         508            1.690                                                                     13751                 13752                13753                
489      GTG         13     35        508         508            0.350                                                                     13751                 13752                13753                
489      GTAGG       403    354       508         508            1.670                                               13751                 13752                 13753                13754                13755                
489      GTGAA       13     35        508         508            0.350                                               13751                 13752                 13753                13754                13755                
489      ATAGG       45     32        508         508            1.450                                               13751                 13752                 13753                13754                13755                
489      GCGAA       41     77        508         508            0.490                                               13751                 13752                 13753                13754                13755                
489      TGAAC       13     34        508         508            0.370                                               13752                 13753                 13754                13755                13756                
489      TAGGC       347    309       508         508            1.390                                               13752                 13753                 13754                13755                13756                
489      TAGGT       101    77        508         508            1.390                                               13752                 13753                 13754                13755                13756                
489      CGAAT       20     33        508         508            0.590                                               13752                 13753                 13754                13755                13756                
489      CGAAC       21     45        508         508            0.440                                               13752                 13753                 13754                13755                13756                
489      TAGGCAT     148    126       508         508            1.250                         13752                 13753                 13754                 13755                13756                13757                13758                
489      TAGGTCT     101    76        508         508            1.410                         13752                 13753                 13754                 13755                13756                13757                13758                
489      TGAACCT     13     34        508         508            0.370                         13752                 13753                 13754                 13755                13756                13757                13758                
489      CGAACAC     10     32        508         508            0.300                         13752                 13753                 13754                 13755                13756                13757                13758                
489      CGAATCT     20     33        508         508            0.590                         13752                 13753                 13754                 13755                13756                13757                13758                
489      CAGGCAT     4      9         508         508            0.440                         13752                 13753                 13754                 13755                13756                13757                13758                
489      AACCT       18     39        508         508            0.440                                               13754                 13755                 13756                13757                13758                
489      GGTCT       102    76        508         508            1.430                                               13754                 13755                 13756                13757                13758                
489      GGCAT       151    131       508         508            1.220                                               13754                 13755                 13756                13757                13758                
489      AATCT       19     34        508         508            0.540                                               13754                 13755                 13756                13757                13758                
489      AACAC       10     33        508         508            0.290                                               13754                 13755                 13756                13757                13758                
489      GCATT       151    131       508         508            1.220                                               13755                 13756                 13757                13758                13759                
489      ACCTT       14     33        508         508            0.410                                               13755                 13756                 13757                13758                13759                
489      GTCTT       102    76        508         508            1.430                                               13755                 13756                 13757                13758                13759                
489      ATCTT       18     34        508         508            0.510                                               13755                 13756                 13757                13758                13759                
489      ACACT       11     33        508         508            0.320                                               13755                 13756                 13757                13758                13759                
489      T           494    474       508         508            2.530                                                                                           13758                
489      C           14     34        508         508            0.400                                                                                           13758                
494      CGG         105    50        508         508            2.390                                                                     15111                 15112                15113                
494      TAG         139    160       508         508            0.820                                                                     15111                 15112                15113                
494      CAG         82     116       508         508            0.650                                                                     15111                 15112                15113                
494      CAGAC       72     103       508         508            0.650                                               15111                 15112                 15113                15114                15115                
494      TAGAC       137    157       508         508            0.830                                               15111                 15112                 15113                15114                15115                
494      CGGCC       75     27        508         508            3.090                                               15111                 15112                 15113                15114                15115                
494      CGGAC       30     21        508         508            1.460                                               15111                 15112                 15113                15114                15115                
494      CGGCCAC     75     27        508         508            3.090                         15111                 15112                 15113                 15114                15115                15116                15117                
494      CAGACAC     71     102       508         508            0.650                         15111                 15112                 15113                 15114                15115                15116                15117                
494      TAGACAC     9      2         508         508            4.560                         15111                 15112                 15113                 15114                15115                15116                15117                
494      TAGACGC     128    154       508         508            0.770                         15111                 15112                 15113                 15114                15115                15116                15117                
494      CGGACAC     30     19        508         508            1.620                         15111                 15112                 15113                 15114                15115                15116                15117                
494      CGGCCACCC   75     27        508         508            3.090   15111                 15112                 15113                 15114                 15115                15116                15117                15118                15119                
494      TAGACGCTC   127    154       508         508            0.770   15111                 15112                 15113                 15114                 15115                15116                15117                15118                15119                
494      CAGACACTC   71     102       508         508            0.650   15111                 15112                 15113                 15114                 15115                15116                15117                15118                15119                
494      TAGACACTC   9      2         508         508            4.560   15111                 15112                 15113                 15114                 15115                15116                15117                15118                15119                
494      CGGACACCC   30     19        508         508            1.620   15111                 15112                 15113                 15114                 15115                15116                15117                15118                15119                
494      GGACACCCT   30     19        508         508            1.620   15112                 15113                 15114                 15115                 15116                15117                15118                15119                15120                
494      AGACGCTCT   125    154       508         508            0.750   15112                 15113                 15114                 15115                 15116                15117                15118                15119                15120                
494      AGACACTCC   72     101       508         508            0.670   15112                 15113                 15114                 15115                 15116                15117                15118                15119                15120                
494      AGACACTCT   8      3         508         508            2.690   15112                 15113                 15114                 15115                 15116                15117                15118                15119                15120                
494      GGCCACCCT   75     27        508         508            3.090   15112                 15113                 15114                 15115                 15116                15117                15118                15119                15120                
494      CACCC       105    46        508         508            2.620                                               15115                 15116                 15117                15118                15119                
494      CGCTC       126    155       508         508            0.750                                               15115                 15116                 15117                15118                15119                
494      CACTC       80     104       508         508            0.730                                               15115                 15116                 15117                15118                15119                
494      CGCTCTC     125    154       508         508            0.750                         15115                 15116                 15117                 15118                15119                15120                15121                
494      CACCCTT     31     19        508         508            1.670                         15115                 15116                 15117                 15118                15119                15120                15121                
494      CACTCTT     8      2         508         508            4.050                         15115                 15116                 15117                 15118                15119                15120                15121                
494      CACCCTC     75     27        508         508            3.090                         15115                 15116                 15117                 15118                15119                15120                15121                
494      CAATTTT     63     76        508         508            0.800                         15115                 15116                 15117                 15118                15119                15120                15121                
494      CACTCCT     72     101       508         508            0.670                         15115                 15116                 15117                 15118                15119                15120                15121                
494      AATTTTT     48     63        508         508            0.740                         15116                 15117                 15118                 15119                15120                15121                15122                
494      GCTCTCC     124    154       508         508            0.740                         15116                 15117                 15118                 15119                15120                15121                15122                
494      ACCCTCC     75     27        508         508            3.090                         15116                 15117                 15118                 15119                15120                15121                15122                
494      ACCCTTC     31     19        508         508            1.670                         15116                 15117                 15118                 15119                15120                15121                15122                
494      ACTCCTT     72     101       508         508            0.670                         15116                 15117                 15118                 15119                15120                15121                15122                
494      ACTCTTT     8      2         508         508            4.050                         15116                 15117                 15118                 15119                15120                15121                15122                
494      ATTTTTA     49     63        508         508            0.750                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CTCTTTA     8      2         508         508            4.050                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CTCCTTA     73     102       508         508            0.670                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CCCTTCG     31     19        508         508            1.670                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CTCTCCA     123    157       508         508            0.710                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CCCTCCA     75     27        508         508            3.090                         15117                 15118                 15119                 15120                15121                15122                15123                
494      CTTTA       8      2         508         508            4.050                                               15119                 15120                 15121                15122                15123                
494      TTTTA       49     63        508         508            0.750                                               15119                 15120                 15121                15122                15123                
494      CCTTA       73     103       508         508            0.660                                               15119                 15120                 15121                15122                15123                
494      CTTCG       31     19        508         508            1.670                                               15119                 15120                 15121                15122                15123                
494      T           131    168       508         508            0.700                                                                                           15122                
494      C           377    340       508         508            1.420                                                                                           15122                
494      G           178    156       508         508            1.220                                                                                           15123                
494      A           330    352       508         508            0.820                                                                                           15123                
496      C           263    300       508         508            0.740                                                                                           15876                
496      T           245    208       508         508            1.340                                                                                           15876                
496      C           112    163       508         508            0.600                                                                                           15877                
496      T           396    345       508         508            1.670                                                                                           15877                
496      TTG         89     69        508         508            1.350                                                                     15877                 15878                15879                
496      CGA         112    162       508         508            0.600                                                                     15877                 15878                15879                
496      TGG         159    130       508         508            1.320                                                                     15877                 15878                15879                
496      A           260    308       508         508            0.680                                                                                           15879                
496      G           248    200       508         508            1.470                                                                                           15879                
496      TTGGGAGTT   125    89        508         508            1.540   15876                 15877                 15878                 15879                 15880                15881                15882                15883                15884                
496      CCGAGAGTC   60     90        508         508            0.620   15876                 15877                 15878                 15879                 15880                15881                15882                15883                15884                
496      TTTGGAGTT   84     65        508         508            1.350   15876                 15877                 15878                 15879                 15880                15881                15882                15883                15884                
496      CTGAAGACT   115    99        508         508            1.210   15876                 15877                 15878                 15879                 15880                15881                15882                15883                15884                
496      TGGAGTT     88     67        508         508            1.380                         15878                 15879                 15880                 15881                15882                15883                15884                
496      GGGAGTT     158    122       508         508            1.430                         15878                 15879                 15880                 15881                15882                15883                15884                
496      GAGAGTT     1      9         508         508            0.110                         15878                 15879                 15880                 15881                15882                15883                15884                
496      GAGAGTC     91     127       508         508            0.650                         15878                 15879                 15880                 15881                15882                15883                15884                
496      AGAGTTC     1      9         508         508            0.110                         15879                 15880                 15881                 15882                15883                15884                15885                
496      AGAGTCT     82     122       508         508            0.610                         15879                 15880                 15881                 15882                15883                15884                15885                
496      GGAGTTC     246    188       508         508            1.600                         15879                 15880                 15881                 15882                15883                15884                15885                
496      AGAGTCTTC   79     117       508         508            0.620   15879                 15880                 15881                 15882                 15883                15884                15885                15886                15887                
496      AGGGTTCCC   9      15        508         508            0.590   15879                 15880                 15881                 15882                 15883                15884                15885                15886                15887                
496      GGAGTTCCT   225    161       508         508            1.710   15879                 15880                 15881                 15882                 15883                15884                15885                15886                15887                
496      T           376    321       508         508            1.660                                                                                           15884                
496      C           132    187       508         508            0.600                                                                                           15884                
496      T           84     131       508         508            0.570                                                                                           15885                
496      C           424    377       508         508            1.750                                                                                           15885                
496      T           130    183       508         508            0.610                                                                                           15886                
496      C           378    325       508         508            1.640                                                                                           15886                
496      T           364    297       508         508            1.800                                                                                           15887                
496      C           144    211       508         508            0.560                                                                                           15887                
496      CCT         79     113       508         508            0.640                                                                     15887                 15888                15889                
496      CCC         18     36        508         508            0.480                                                                     15887                 15888                15889                
496      TTT         90     76        508         508            1.220                                                                     15887                 15888                15889                
496      TTC         205    169       508         508            1.360                                                                     15887                 15888                15889                
496      TCT         56     43        508         508            1.340                                                                     15887                 15888                15889                
496      CTC         14     24        508         508            0.570                                                                     15887                 15888                15889                
497      G           426    448       508         508            0.700                                                                                           16147                
497      A           82     60        508         508            1.440                                                                                           16147                
497      A           426    448       508         508            0.700                                                                                           16148                
497      C           82     60        508         508            1.440                                                                                           16148                
497      C           203    225       508         508            0.840                                                                                           16149                
497      T           305    283       508         508            1.190                                                                                           16149                
497      C           355    322       508         508            1.340                                                                                           16150                
497      T           153    186       508         508            0.750                                                                                           16150                
497      A           355    321       508         508            1.350                                                                                           16152                
497      G           153    187       508         508            0.740                                                                                           16152                
497      C           381    426       508         508            0.580                                                                                           16155                
497      T           127    82        508         508            1.730                                                                                           16155                
497      T           108    67        508         508            1.780                                                                                           16157                
497      C           400    441       508         508            0.560                                                                                           16157                
497      C           370    432       508         508            0.470                                                                                           16158                
497      T           138    76        508         508            2.120                                                                                           16158                
497      T           256    219       508         508            1.340                                                                                           16159                
497      C           252    289       508         508            0.750                                                                                           16159                
497      A           370    432       508         508            0.470                                                                                           16160                
497      G           138    76        508         508            2.120                                                                                           16160                
497      T           409    381       508         508            1.380                                                                                           16161                
497      C           99     127       508         508            0.730                                                                                           16161                
497      C           290    311       508         508            0.840                                                                                           16162                
497      A           218    197       508         508            1.190                                                                                           16162                
497      C           103    62        508         508            1.830                                                                                           16164                
497      T           405    446       508         508            0.550                                                                                           16164                
497      A           389    413       508         508            0.750                                                                                           16165                
497      C           119    95        508         508            1.330                                                                                           16165                
497      A           51     33        508         508            1.610                                                                                           16167                
497      G           457    475       508         508            0.620                                                                                           16167                
497      C           311    355       508         508            0.680                                                                                           16168                
497      T           197    153       508         508            1.470                                                                                           16168                
497      T           102    82        508         508            1.310                                                                                           16170                
497      C           406    426       508         508            0.770                                                                                           16170                
497      T           236    215       508         508            1.180                                                                                           16171                
497      C           272    293       508         508            0.850                                                                                           16171                
497      C           210    190       508         508            1.180                                                                                           16172                
497      T           298    318       508         508            0.850                                                                                           16172                
497      G           48     35        508         508            1.410                                                                                           16173                
497      T           460    473       508         508            0.710                                                                                           16173                
498      T           401    452       508         508            0.460                                                                                           16329                
498      C           107    56        508         508            2.150                                                                                           16329                
498      C           296    275       508         508            1.180                                                                                           16330                
498      T           212    233       508         508            0.850                                                                                           16330                
499      G           232    266       508         508            0.760                                                                                           17571                
499      A           276    242       508         508            1.310                                                                                           17571                
499      AAA         185    157       508         508            1.280                                                                     17571                 17572                17573                
499      GAA         231    263       508         508            0.780                                                                     17571                 17572                17573                
499      CAAACGT     100    79        508         508            1.330                         17570                 17571                 17572                 17573                17574                17575                17576                
499      CAAATGT     37     23        508         508            1.660                         17570                 17571                 17572                 17573                17574                17575                17576                
499      CGAATAC     29     18        508         508            1.650                         17570                 17571                 17572                 17573                17574                17575                17576                
499      CGAATAT     118    167       508         508            0.620                         17570                 17571                 17572                 17573                17574                17575                17576                
499      CGAATGT     30     19        508         508            1.620                         17570                 17571                 17572                 17573                17574                17575                17576                
499      CAAACACAA   29     15        508         508            1.990   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CAAACACGG   10     21        508         508            0.470   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CGAATACAG   19     11        508         508            1.760   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CAAACGTGG   101    77        508         508            1.390   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CGAATGTGG   28     18        508         508            1.590   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CGAATATGG   117    168       508         508            0.610   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      CAAATGTAG   35     24        508         508            1.490   17570                 17571                 17572                 17573                 17574                17575                17576                17577                17578                
499      AAACGTGGT   101    71        508         508            1.530   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      GAATATGGT   116    160       508         508            0.640   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      AAACACAAC   29     15        508         508            1.990   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      GAATACAGC   19     11        508         508            1.760   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      AAATGTAGC   35     23        508         508            1.560   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      GAATGTGGT   28     18        508         508            1.590   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      AAACACGGC   9      21        508         508            0.420   17571                 17572                 17573                 17574                 17575                17576                17577                17578                17579                
499      ATACAGC     23     15        508         508            1.560                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ACGTGGC     1      9         508         508            0.110                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ATGTAGC     36     23        508         508            1.610                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ATATGGT     117    167       508         508            0.610                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ATGTGGT     28     17        508         508            1.680                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ACACGGC     25     37        508         508            0.660                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ACACAAC     29     14        508         508            2.140                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ACGTGGT     133    106       508         508            1.350                         17573                 17574                 17575                 17576                17577                17578                17579                
499      ACAAC       35     19        508         508            1.900                                               17575                 17576                 17577                17578                17579                
499      ATGGT       120    170       508         508            0.610                                               17575                 17576                 17577                17578                17579                
499      ATGGC       1      9         508         508            0.110                                               17575                 17576                 17577                17578                17579                
499      GTAGC       36     25        508         508            1.470                                               17575                 17576                 17577                17578                17579                
499      ACAGC       107    92        508         508            1.210                                               17575                 17576                 17577                17578                17579                
499      GTGGT       162    131       508         508            1.350                                               17575                 17576                 17577                17578                17579                
499      GTAGCCC     34     24        508         508            1.450                         17575                 17576                 17577                 17578                17579                17580                17581                
499      ATGGTCC     114    164       508         508            0.610                         17575                 17576                 17577                 17578                17579                17580                17581                
499      GTGGTCT     108    81        508         508            1.420                         17575                 17576                 17577                 17578                17579                17580                17581                
499      ACGGCAC     33     43        508         508            0.750                         17575                 17576                 17577                 17578                17579                17580                17581                
499      ACAACCC     35     18        508         508            2.010                         17575                 17576                 17577                 17578                17579                17580                17581                
499      AACCC       37     18        508         508            2.140                                               17577                 17578                 17579                17580                17581                
499      GGTCC       163    218       508         508            0.630                                               17577                 17578                 17579                17580                17581                
499      GGCAC       34     47        508         508            0.700                                               17577                 17578                 17579                17580                17581                
499      GGTCT       123    89        508         508            1.500                                               17577                 17578                 17579                17580                17581                
499      GGCCC       2      13        508         508            0.150                                               17577                 17578                 17579                17580                17581                
499      AGCCC       146    118       508         508            1.330                                               17577                 17578                 17579                17580                17581                
499      GTCTC       112    81        508         508            1.490                                               17578                 17579                 17580                17581                17582                
499      GCCCC       39     24        508         508            1.680                                               17578                 17579                 17580                17581                17582                
499      GTCCC       154    209       508         508            0.620                                               17578                 17579                 17580                17581                17582                
499      GCACC       34     47        508         508            0.700                                               17578                 17579                 17580                17581                17582                
499      ACCCC       38     17        508         508            2.340                                               17578                 17579                 17580                17581                17582                
499      GGTCTCCCC   94     67        508         508            1.490   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      AGCCCCCAC   33     17        508         508            2.010   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      GGTCCCCCT   79     120       508         508            0.600   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      GGCCCTCCC   1      11        508         508            0.090   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      AACCCCTCC   19     7         508         508            2.780   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      AGCCCTTCT   13     5         508         508            2.640   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      AACCCCCCC   18     9         508         508            2.040   17577                 17578                 17579                 17580                 17581                17582                17583                17584                17585                
499      TCTCCCT     9      15        508         508            0.590                         17579                 17580                 17581                 17582                17583                17584                17585                
499      TCTCCCC     94     64        508         508            1.580                         17579                 17580                 17581                 17582                17583                17584                17585                
499      CCCCCCC     21     13        508         508            1.640                         17579                 17580                 17581                 17582                17583                17584                17585                
499      CCCCTCC     21     8         508         508            2.700                         17579                 17580                 17581                 17582                17583                17584                17585                
499      CCCCCAC     33     18        508         508            1.890                         17579                 17580                 17581                 17582                17583                17584                17585                
499      TCCCCCT     79     120       508         508            0.600                         17579                 17580                 17581                 17582                17583                17584                17585                
499      CACCCCC     28     39        508         508            0.700                         17579                 17580                 17581                 17582                17583                17584                17585                
499      CTTCT       14     7         508         508            2.030                                               17581                 17582                 17583                17584                17585                
499      CCTCC       19     9         508         508            2.150                                               17581                 17582                 17583                17584                17585                
499      TCCCT       9      16        508         508            0.550                                               17581                 17582                 17583                17584                17585                
499      TCCCC       94     63        508         508            1.600                                               17581                 17582                 17583                17584                17585                
499      CCCAC       33     17        508         508            2.010                                               17581                 17582                 17583                17584                17585                
499      CCCCT       80     122       508         508            0.590                                               17581                 17582                 17583                17584                17585                
499      CAC         33     17        508         508            2.010                                                                     17583                 17584                17585                
499      TCT         21     14        508         508            1.520                                                                     17583                 17584                17585                
499      TCC         27     13        508         508            2.140                                                                     17583                 17584                17585                
499      CCT         100    145       508         508            0.610                                                                     17583                 17584                17585                
499      TCCGG       24     8         508         508            3.100                                               17583                 17584                 17585                17586                17587                
499      CCTAG       80     112       508         508            0.660                                               17583                 17584                 17585                17586                17587                
499      CACGG       33     17        508         508            2.010                                               17583                 17584                 17585                17586                17587                
499      CCTGG       20     32        508         508            0.610                                               17583                 17584                 17585                17586                17587                
499      CAG         47     35        508         508            1.380                                                                     17585                 17586                17587                
499      TAG         83     114       508         508            0.670                                                                     17585                 17586                17587                
499      CGG         210    172       508         508            1.380                                                                     17585                 17586                17587                
500      A           309    345       508         508            0.730                                                                                           17787                
500      C           199    163       508         508            1.360                                                                                           17787                
500      G           67     87        508         508            0.740                                                                                           17788                
500      A           441    421       508         508            1.360                                                                                           17788                
500      C           388    416       508         508            0.720                                                                                           17789                
500      T           120    92        508         508            1.400                                                                                           17789                
500      C           319    361       508         508            0.690                                                                                           17790                
500      T           189    147       508         508            1.450                                                                                           17790                
500      C           400    361       508         508            1.510                                                                                           17791                
500      T           108    147       508         508            0.660                                                                                           17791                
500      C           121    184       508         508            0.550                                                                                           17792                
500      T           387    324       508         508            1.820                                                                                           17792                
500      A           264    308       508         508            0.700                                                                                           17793                
500      G           244    200       508         508            1.420                                                                                           17793                
500      T           244    200       508         508            1.420                                                                                           17794                
500      C           264    308       508         508            0.700                                                                                           17794                
500      C           252    202       508         508            1.490                                                                                           17795                
500      T           256    306       508         508            0.670                                                                                           17795                
500      G           131    155       508         508            0.790                                                                                           17799                
500      T           377    353       508         508            1.260                                                                                           17799                
501      T           54     27        508         508            2.120                                                                                           18307                
501      C           454    481       508         508            0.470                                                                                           18307                
501      G           158    188       508         508            0.770                                                                                           18308                
501      A           350    320       508         508            1.300                                                                                           18308                
501      T           469    456       508         508            1.370                                                                                           18309                
501      C           39     52        508         508            0.730                                                                                           18309                
501      G           468    454       508         508            1.390                                                                                           18310                
501      A           40     54        508         508            0.720                                                                                           18310                
501      T           57     21        508         508            2.930                                                                                           18311                
501      C           451    487       508         508            0.340                                                                                           18311                
501      G           57     22        508         508            2.790                                                                                           18312                
501      A           451    486       508         508            0.360                                                                                           18312                
501      C           301    274       508         508            1.240                                                                                           18314                
501      T           207    234       508         508            0.810                                                                                           18314                
501      C           237    270       508         508            0.770                                                                                           18315                
501      T           271    238       508         508            1.300                                                                                           18315                
501      T           70     88        508         508            0.760                                                                                           18316                
501      G           438    420       508         508            1.310                                                                                           18316                
501      A           380    403       508         508            0.770                                                                                           18317                
501      G           128    105       508         508            1.290                                                                                           18317                
502      GCGTT       12     27        508         508            0.430                                               18747                 18748                 18749                18750                18751                
502      GTGTT       2      8         508         508            0.250                                               18747                 18748                 18749                18750                18751                
502      ACGCC       2      10        508         508            0.200                                               18747                 18748                 18749                18750                18751                
502      GCGCC       72     88        508         508            0.790                                               18747                 18748                 18749                18750                18751                
502      GCGCT       83     66        508         508            1.310                                               18747                 18748                 18749                18750                18751                
502      CGCCA       74     99        508         508            0.700                                               18748                 18749                 18750                18751                18752                
502      TGCTA       135    117       508         508            1.210                                               18748                 18749                 18750                18751                18752                
502      CGCTA       95     70        508         508            1.440                                               18748                 18749                 18750                18751                18752                
502      CGTTG       9      25        508         508            0.350                                               18748                 18749                 18750                18751                18752                
502      TGTTG       2      9         508         508            0.220                                               18748                 18749                 18750                18751                18752                
502      TTG         11     34        508         508            0.310                                                                     18750                 18751                18752                
502      CTA         409    350       508         508            1.860                                                                     18750                 18751                18752                
502      CTG         1      15        508         508            0.060                                                                     18750                 18751                18752                
502      CCA         77     101       508         508            0.720                                                                     18750                 18751                18752                
502      A           495    457       508         508            4.250                                                                                           18752                
502      G           13     51        508         508            0.240                                                                                           18752                
502      CAACT       61     78        508         508            0.750                                               18751                 18752                 18753                18754                18755                
502      TAGTT       73     35        508         508            2.270                                               18751                 18752                 18753                18754                18755                
502      TGACT       10     39        508         508            0.240                                               18751                 18752                 18753                18754                18755                
502      TAGCTAT     22     15        508         508            1.490                         18751                 18752                 18753                 18754                18755                18756                18757                
502      CAACTAT     43     62        508         508            0.670                         18751                 18752                 18753                 18754                18755                18756                18757                
502      TAACTAT     167    145       508         508            1.230                         18751                 18752                 18753                 18754                18755                18756                18757                
502      TAGTTAT     67     28        508         508            2.600                         18751                 18752                 18753                 18754                18755                18756                18757                
502      TAACTGG     29     44        508         508            0.640                         18751                 18752                 18753                 18754                18755                18756                18757                
502      TGACTAT     9      33        508         508            0.260                         18751                 18752                 18753                 18754                18755                18756                18757                
502      TTA         80     49        508         508            1.750                                                                     18754                 18755                18756                
502      CTG         57     72        508         508            0.770                                                                     18754                 18755                18756                
502      CTA         243    262       508         508            0.860                                                                     18754                 18755                18756                
502      TGG         51     68        508         508            0.720                                                                     18755                 18756                18757                
502      T           450    437       508         508            1.260                                                                                           18757                
502      G           58     71        508         508            0.790                                                                                           18757                
503      C           134    82        508         508            1.860                                                                                           19023                
503      A           374    426       508         508            0.540                                                                                           19023                
503      A           42     21        508         508            2.090                                                                                           19024                
503      C           466    487       508         508            0.480                                                                                           19024                
504      AGG         83     66        508         508            1.310                                                                     19095                 19096                19097                
504      CGA         54     84        508         508            0.600                                                                     19095                 19096                19097                
504      AGA         111    80        508         508            1.500                                                                     19095                 19096                19097                
504      CTCGAAAGG   4      12        508         508            0.330   19093                 19094                 19095                 19096                 19097                19098                19099                19100                19101                
504      CCCGAAAGG   48     72        508         508            0.630   19093                 19094                 19095                 19096                 19097                19098                19099                19100                19101                
504      CTAAGAAAG   7      22        508         508            0.310   19093                 19094                 19095                 19096                 19097                19098                19099                19100                19101                
504      ATAGACGGT   49     26        508         508            1.980   19093                 19094                 19095                 19096                 19097                19098                19099                19100                19101                
504      AAGAAAG     7      22        508         508            0.310                         19095                 19096                 19097                 19098                19099                19100                19101                
504      AGACGGT     49     26        508         508            1.980                         19095                 19096                 19097                 19098                19099                19100                19101                
504      AGGAAGT     80     66        508         508            1.250                         19095                 19096                 19097                 19098                19099                19100                19101                
504      CGAAAGG     52     84        508         508            0.580                         19095                 19096                 19097                 19098                19099                19100                19101                
504      GACGGTG     49     26        508         508            1.980                         19096                 19097                 19098                 19099                19100                19101                19102                
504      GAAAGGG     53     85        508         508            0.580                         19096                 19097                 19098                 19099                19100                19101                19102                
504      AGAAAGG     7      22        508         508            0.310                         19096                 19097                 19098                 19099                19100                19101                19102                
504      AAGGG       53     86        508         508            0.570                                               19098                 19099                 19100                19101                19102                
504      CGGTG       49     26        508         508            1.980                                               19098                 19099                 19100                19101                19102                
504      AAAGG       7      23        508         508            0.290                                               19098                 19099                 19100                19101                19102                
504      AAGTG       117    101       508         508            1.210                                               19098                 19099                 19100                19101                19102                
504      AAGGC       7      22        508         508            0.310                                               19099                 19100                 19101                19102                19103                
504      AGTAC       32     23        508         508            1.420                                               19099                 19100                 19101                19102                19103                
504      AGGGC       53     87        508         508            0.560                                               19099                 19100                 19101                19102                19103                
504      GGTGA       45     26        508         508            1.800                                               19099                 19100                 19101                19102                19103                
504      GTACT       32     23        508         508            1.420                                               19100                 19101                 19102                19103                19104                
504      AGGCT       7      22        508         508            0.310                                               19100                 19101                 19102                19103                19104                
504      GTGAT       46     26        508         508            1.850                                               19100                 19101                 19102                19103                19104                
504      GTGCC       51     37        508         508            1.420                                               19100                 19101                 19102                19103                19104                
504      GGGCT       53     87        508         508            0.560                                               19100                 19101                 19102                19103                19104                
504      TACTA       32     23        508         508            1.420                                               19101                 19102                 19103                19104                19105                
504      GGCTA       5      13        508         508            0.380                                               19101                 19102                 19103                19104                19105                
504      TGATA       45     26        508         508            1.800                                               19101                 19102                 19103                19104                19105                
504      TGCCA       52     37        508         508            1.450                                               19101                 19102                 19103                19104                19105                
504      GGCTG       55     96        508         508            0.520                                               19101                 19102                 19103                19104                19105                
504      TGATAAG     45     26        508         508            1.800                         19101                 19102                 19103                 19104                19105                19106                19107                
504      GGCTGGG     55     94        508         508            0.530                         19101                 19102                 19103                 19104                19105                19106                19107                
504      TGCCAGA     51     37        508         508            1.420                         19101                 19102                 19103                 19104                19105                19106                19107                
504      GGCTAAG     5      15        508         508            0.330                         19101                 19102                 19103                 19104                19105                19106                19107                
504      TGATAAGGT   44     26        508         508            1.760   19101                 19102                 19103                 19104                 19105                19106                19107                19108                19109                
504      TGCCAGAGT   48     37        508         508            1.330   19101                 19102                 19103                 19104                 19105                19106                19107                19108                19109                
504      GGCTAAGGT   5      14        508         508            0.350   19101                 19102                 19103                 19104                 19105                19106                19107                19108                19109                
504      GGCTGGGGT   9      31        508         508            0.280   19101                 19102                 19103                 19104                 19105                19106                19107                19108                19109                
504      GGCTGGGGC   46     64        508         508            0.690   19101                 19102                 19103                 19104                 19105                19106                19107                19108                19109                
504      GCTAAGGTG   5      13        508         508            0.380   19102                 19103                 19104                 19105                 19106                19107                19108                19109                19110                
504      GCTGGGGTA   22     15        508         508            1.490   19102                 19103                 19104                 19105                 19106                19107                19108                19109                19110                
504      GATAAGGTA   44     26        508         508            1.760   19102                 19103                 19104                 19105                 19106                19107                19108                19109                19110                
504      GCTGGGGCG   46     63        508         508            0.700   19102                 19103                 19104                 19105                 19106                19107                19108                19109                19110                
504      GCCAGAGTG   48     37        508         508            1.330   19102                 19103                 19104                 19105                 19106                19107                19108                19109                19110                
