Table 19.2. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with schizophrenia from the analysis of genome wide scan (GWS) data:
NRG1-1_cr1-not (to claim). Columns include: Region ID; Chromosome; Build 36 location in base pairs
(bp); rs#, dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for
this patent application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence
flanking either side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value
for statistical significance from the GWS for single SNP markers and for the most highly associated 
multi-marker haplotypes centered at the reference marker and defined by the sliding windows of 
specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        
534         2     36450621       12615281   12056    TGGAAACAACRCCCCAGCTTG   0.031           -          -          -          -          
534         2     36457267       3770949    12057    CTGGATTTGTYTATGGATGGA   1.037           0.951      -          -          -          
534         2     36463573       3821165    12058    TTTGGGAGTTRTCTGCATTTG   0.765           0.965      1.225      -          -          
534         2     36464286       888076     12059    GTTTCTGCTCYCAAGAAGCTC   1.043           1.947      1.837      1.171      -          
534         2     36465984       3770945    12060    CTGATTTCACRAAGTTGTTAT   3.347           2.120      1.719      1.980      1.712      
534         2     36471032       3770939    12061    TGGCCCAGGTRAGCTGTCCCT   2.868           2.085      4.104      1.904      2.367      
534         2     36474457       12466450   12062    GTAAGAGCCTYAAGTGTGCCT   0.491           1.813      3.722      2.807      2.522      
534         2     36476552       1465335    12063    TTTTAAACCTRAAGTTGGTCT   1.295           2.073      3.016      3.348      2.480      
534         2     36479582       3755214    12064    ATGCCAAGAARGTATGATTTG   1.086           3.473      3.034      2.413      3.195      
534         2     36481229       4670145    12065    AGTGAGAACARAGAGGATACC   4.993           3.196      3.142      1.690      -          
534         2     36483772       3821161    12066    GGCTGAAGAGRTGTCTGTGTT   0.043           3.405      3.295      -          -          
534         2     36488172       876458     12067    AAAATAAAAGKGTTACCAAAA   0.499           0.221      -          -          -          
534         2     36491977       3770911    12068    TGTCTGTCTARGTACAGGTCT   0.599           -          -          -          -          
535         4     165884314      12503532   13552    GGCTCAGTAAYAATAGGAAAC   0.117           0.735      -          -          -          
535         4     165888610      4254724    13553    CAATGCTGCARCTTTAATCAA   0.968           0.630      4.964      -          -          
535         4     165902651      12650938   13554    GGAGAAACGTRAAAGAGTCAC   0.082           3.377      3.839      2.832      -          
535         4     165913885      4692008    13555    GGCTCTGCCAYTGGGTAATTC   4.534           2.772      2.707      2.071      -          
535         4     165914882      4634180    13556    TTAAATATCTRGCAATACAAT   0.259           3.129      2.930      -          -          
535         4     165918575      6816976    13557    GAAAGATATCKGTTCATAAAG   0.746           0.786      -          -          -          
535         4     165920129      6841926    13558    TTTTGTCATGRAAAAGTCAGC   0.532           -          -          -          -          
536         5     116125903      2933639    14091    GCCTTCTACAYGTCTTTGTTT   0.763           -          -          -          -          
536         5     116135271      2242410    14092    CGTGGAACAAYGTAAGTTCTG   0.905           0.274      -          -          -          
536         5     116152174      924454     14093    AGTGACCCTGRTCTTTCCTAG   0.449           1.263      2.685      -          -          
536         5     116152977      3097167    14094    GCCTGCTATCRGTTTAAGATT   2.233           2.837      2.979      3.023      -          
536         5     116154119      2964675    14095    TCATAGCAGTRCTTGTCTCAT   4.315           3.045      4.472      -          -          
536         5     116167937      2937067    14096    ACTTGGACAARAGGTAGGATT   0.185           3.352      -          -          -          
536         5     116174664      10043156   14097    CCACAGATAARCATTGGCTCT   0.306           -          -          -          -          
537         5     134441399      1039596    14196    TTGTGAATGCYTGTGACTGTC   0.837           0.555      1.455      2.210      -          
537         5     134454311      7700739    14197    AATCAACTGCYTGAGACTGGC   1.017           2.133      2.014      1.306      2.291      
537         5     134454580      254575     14198    AAAGGATAGTYATAGGCATGT   1.668           2.758      2.205      1.332      1.031      
537         5     134459062      6596197    14199    TTGTTTCTTCMCCGCATTCCT   1.101           2.580      2.428      1.271      0.774      
537         5     134462915      254572     14200    GAGGGGCAACYGTAGACGTGT   1.152           2.277      2.272      1.131      0.233      
537         5     134471505      254560     14201    CCCAGGACAGRACTGTTTCAT   4.521           2.507      2.230      0.895      0.477      
537         5     134472019      495406     14202    AGCACCACAGKGTTGGCTGTT   1.443           3.044      2.083      1.049      -          
537         5     134482588      574654     14203    TTATCCATAGRATCATTTCCT   1.361           1.330      1.668      -          -          
537         5     134495119      4976270    14204    CACCCAGCCAYATTAGCAAAA   0.027           1.266      -          -          -          
537         5     134495599      477687     14205    CACAGTTGGTRTTCCTGGCAA   0.541           -          -          -          -          
538         6     152627147      4870090    14681    AAACCGTGTCRTCTAAAAGGA   0.350           0.360      1.633      3.677      4.246      
538         6     152630181      9383983    14682    CCTGTATATCYTCTCAGTTGA   0.245           0.363      2.212      3.274      2.978      
538         6     152632310      6939382    14683    AAGAACAACAKACAGATAATC   0.443           1.653      2.792      2.834      2.978      
538         6     152634444      633891     14684    AGAACTGGAAYCCATGATTTT   2.394           2.508      2.500      2.500      2.741      
538         6     152638858      9397497    14685    TTCTCGACTTYTTTTTTTTTT   3.077           2.865      2.849      2.478      1.935      
538         6     152644419      9322366    14686    TTAGGAAGCCRGAGACACTGT   0.837           2.578      4.821      3.145      2.696      
538         6     152644902      9479283    14687    CCTGGCTGTAYATAAGAATCA   2.681           2.373      2.422      3.634      3.696      
538         6     152649760      7747166    14688    CATTCGCATAYGTTATCTTCT   2.034           1.571      4.536      6.493      4.508      
538         6     152653569      2788381    14689    ATTTCTATTAMTTTTTAGGAA   1.169           1.970      6.301      7.430      6.263      
538         6     152655866      10485256   14690    ATGTAATGATYTCTGTTTTTC   0.575           2.794      4.889      5.281      5.010      
538         6     152657866      584336     14691    AAGTATTGAARAAGGCTCCAG   4.700           3.413      5.196      5.147      5.226      
538         6     152662566      10485257   14692    ATCCTATGACRGTCTGAATGC   0.575           3.454      4.237      4.677      -          
538         6     152665225      1408459    14693    ACTGACAACTYTCTTTAAAAG   1.202           1.079      3.981      -          -          
538         6     152665613      674724     14694    TTTAATTTCAYTTGCTTTTGA   0.781           0.888      -          -          -          
538         6     152667705      9479288    14695    CAGTCTGCACKTCATAATTAG   0.869           -          -          -          -          
539         7     13747358       10486074   14806    AACTGTTAATRCAATGACATC   0.476           -          -          -          -          
539         7     13750378       2190320    14807    CTGCACTCCARTGTTGTGATT   0.990           1.244      -          -          -          
539         7     13753895       17167495   14808    TCTGTCAAAAYTCAATTTAAG   0.476           0.805      1.693      -          -          
539         7     13760728       6956462    14809    ATAATTATCARGTTATCGAAT   0.122           0.798      0.927      1.639      -          
539         7     13764499       17676052   14810    AATGGTGCATRTAACATCTCC   1.086           1.129      3.005      2.304      1.673      
539         7     13768289       11768005   14811    GATGAATTTGRAACCCACATT   2.632           2.824      2.547      3.193      1.862      
539         7     13768350       6461048    14812    TGGATTAGATRGGCTGTGAAA   3.436           3.191      4.169      1.821      2.069      
539         7     13771060       12112961   14813    TTGCTTACTCYCTCACCATGC   4.528           3.460      3.970      3.584      2.351      
539         7     13771695       13224814   14814    GTGATTTTAGMGTTTAGGAGA   2.763           2.918      3.589      3.014      3.058      
539         7     13783165       2190317    14815    AATCAGATAAYCTTAAAATAG   0.000           1.415      3.164      2.872      3.121      
539         7     13786493       17676205   14816    GAAATATAATYCTATGTGCAA   0.981           0.708      1.124      3.259      -          
539         7     13794624       7794026    14817    CAGTTTTGAARCAAATCGTAA   0.149           0.816      0.524      -          -          
540         7     90796183       1344708    14951    AGATAATATGYATCTGAAATT   0.000           -          -          -          -          
540         7     90812303       7791011    14952    GTGAACTTCCRTCTTTAGTTG   0.230           2.658      -          -          -          
540         7     90823982       1429529    14953    CTGGGCTCTTRTGAAGATGTA   4.709           3.014      1.313      -          -          
540         7     90828047       1429519    14954    TGATCTTGTAYGGAGGGGAAT   2.713           3.100      2.269      1.050      -          
540         7     90830257       10249530   14955    TGGACAAATCYACCTTAATAG   0.480           2.014      3.689      -          -          
540         7     90831235       10253828   14956    AGCACTGGAARTGGTAAATAT   0.379           0.099      -          -          -          
540         7     90853397       2564438    14957    TCCCTACTGAYGAAGAATGTG   0.157           -          -          -          -          
541         8     69828104       9886368    15212    GCTAACATGGMCCCTCTCACT   0.289           2.187      2.423      4.468      4.702      
541         8     69829443       7838605    15213    AATGACTTCTRGGATTTTTAA   1.322           2.051      5.617      4.674      3.577      
541         8     69832999       10110245   15214    GCTAGGACAGYAGCAAAGAAG   0.653           2.996      3.886      3.497      2.225      
541         8     69839500       7845019    15215    GGGCCTCAGGKTTATTCAGTA   4.414           4.004      2.677      2.061      2.808      
541         8     69844942       4278138    15216    CCAGTTGCCAMAATCTTTCAA   0.764           3.279      3.349      2.061      1.951      
541         8     69851620       7817788    15217    AGGTCTGGATYCATTCATGGG   0.440           2.161      4.252      2.754      1.475      
541         8     69855690       2953946    15218    GATTTTTAACRGAAGGATTAA   1.394           1.181      2.099      2.583      1.755      
541         8     69856097       2953950    15219    ATTCTGTTAGMAGATAGAATA   0.153           1.446      1.059      1.295      1.729      
542         9     131233919      1147327    15913    CATGGCGGTCRTTGGAAGTAG   0.031           -          -          -          -          
542         9     131234386      10988373   15914    ACCCCACAGTYGTACCCCGCA   0.454           0.450      -          -          -          
542         9     131236382      914709     15915    CCTCCTTGCCRCCTTGGTGTC   0.254           0.589      0.815      -          -          
542         9     131237956      1147331    15916    CTGTGACTTTYTGCAAACTCC   1.339           0.774      0.957      0.802      -          
542         9     131238335      1147332    15917    TAGCAGGTACYTGGGTGTACC   0.096           1.718      1.925      1.770      1.470      
542         9     131245070      1147338    15918    AGGAGATGGGMTCTAAGGGAA   0.415           0.057      1.717      1.192      1.775      
542         9     131253480      1880247    15919    GACTTATTTCYGGTCACCTGG   0.331           1.200      1.332      1.445      1.204      
542         9     131268384      1147359    15920    GGAGTCAACCRGGCTGAGGGT   2.870           1.846      1.967      2.051      2.054      
542         9     131273635      1147367    15921    CTGTTTTCCAYCCTCTGAGGG   0.550           2.526      1.831      1.933      2.031      
542         9     131277765      1147372    15922    AGAACCTACAYTCAAAGCCTC   4.524           2.772      2.899      2.125      1.507      
542         9     131281682      968477     15923    TTTGTTGCGCRTCTTAGCATG   2.763           3.315      3.655      2.294      2.798      
542         9     131286230      1147377    15924    GGGATCTGAGKGAGCACCCAT   3.141           1.973      4.203      3.503      1.324      
542         9     131286833      1543687    15925    CTGTTACTCGKGGAGGGAGAT   3.009           3.433      4.128      2.306      1.485      
542         9     131297604      1220789    15926    AGAATCTTGCYCTGGGGAGGA   4.552           4.207      3.690      2.277      -          
542         9     131300171      10819528   15927    CTAGATTGCCRAAGCTTACTC   0.318           3.120      1.654      -          -          
542         9     131307946      1780456    15928    AATAACAGAARCCGTCCCTGG   0.095           0.327      -          -          -          
543         11    125366429      678440     16672    ACTGACCAACMAGCATGTATC   1.076           -          -          -          -          
543         11    125369536      2155355    16673    GAAAAATTAAYGTAACCTTCT   0.028           1.237      -          -          -          
543         11    125374612      636865     16674    TTCCTCATTAKGTTGTTTTGA   1.343           1.100      3.358      -          -          
543         11    125378132      7104467    16675    CTCCGATGTCRACCGCTCATT   1.303           2.912      2.814      1.711      -          
543         11    125382285      528638     16676    CTACTTTTATKTCCAAAATGA   4.674           2.592      1.736      1.823      1.237      
543         11    125384093      11220311   16677    GCACTTACTAYGCATTAACTC   1.120           3.097      1.988      1.617      -          
543         11    125386312      517835     16678    TTTTTTCCCAYAGGCATGAAC   1.332           0.478      2.714      -          -          
543         11    125393423      4426144    16679    CATTATTCTCYCAAATACTTA   0.051           0.652      -          -          -          
543         11    125394736      3740909    16680    GTGGAATGTTYCAGCCATTTT   0.051           -          -          -          -          
544         15    27462723       4779623    17554    GCATCACACCRTCCACAGGCT   1.385           1.312      2.374      1.978      -          
544         15    27470259       1870237    17555    TTCCTAAAATYAAGAATGTTC   1.055           1.125      1.561      1.847      2.953      
544         15    27471950       607503     17556    TTCGCCTTGAYGCTTGAAAAA   0.866           1.795      1.911      3.624      4.234      
544         15    27472244       9920343    17557    TCTTCAGATAYTGTATCTTCG   2.749           1.608      3.803      3.981      2.455      
544         15    27479683       637568     17558    CAACGTTACARTGATGGGCAG   0.068           4.152      3.841      2.903      3.617      
544         15    27479972       1655645    17559    TTCCATGCAAYTCTAATTAAA   4.343           3.471      3.777      3.514      2.977      
544         15    27492285       1520936    17560    ATCCTCTTTAYTGCAGCCTTA   4.214           3.181      4.892      4.214      2.845      
544         15    27497384       516628     17561    CTACAGTTCTRTTTTTAACAT   1.865           3.519      4.879      4.414      3.577      
544         15    27504337       507736     17562    CACTGCAGGCRCAAGACCAGC   0.582           3.907      5.196      4.404      3.672      
544         15    27505378       538077     17563    ACCACATTAGYGTCAACAATT   0.000           2.868      4.612      4.398      4.080      
544         15    27509109       4780212    17564    CATTAAAAACRTCACCTGCTT   1.432           1.180      3.163      3.640      4.553      
544         15    27513730       1543841    17565    AATCTATGAGYGAGTATCTAT   0.150           2.705      2.180      3.432      4.288      
544         15    27516240       10519650   17566    GGAACACTGAYGCCAATGCTG   1.442           0.500      3.653      2.769      -          
544         15    27520966       511092     17567    TCCATGGCATYTGACACTGCT   0.156           1.854      1.406      -          -          
545         15    98559003       2127845    17864    GTTCTTGGGAYAGTGAGTTAG   0.035           -          -          -          -          
545         15    98559610       2035347    17865    CAGTGAGTAGRTGGAATACTG   0.031           0.085      -          -          -          
545         15    98563203       4419043    17866    CCCACCTGCCRGAGAAGATGA   0.748           1.373      0.497      -          -          
545         15    98566644       1480952    17867    CCAGGCTTTAYCTGTATCACT   2.953           1.514      2.997      1.439      -          
545         15    98571270       999486     17868    GGGAACAGAAMAGAGCTGTGT   2.251           4.349      2.926      1.873      0.993      
545         15    98573930       12901204   17869    AATAATGAGARAAGAAGCAAT   1.112           3.871      4.806      2.905      1.644      
545         15    98574115       8025628    17870    GGCTGTGAACYTCTAAATGCT   4.458           3.515      4.697      4.372      2.007      
545         15    98577716       4965289    17871    GGTACAATTTKATTATTCCCA   0.160           3.737      4.044      2.673      2.856      
545         15    98581347       4246307    17872    ACATATGTGCRTGTATTAGGG   1.433           1.513      4.279      3.102      2.415      
545         15    98582661       4412959    17873    CTTAACCACCYGCATTCCATC   0.033           1.923      1.839      3.522      -          
546         17    50307775       2958934    18265    CTTCTGCTGCYCTGTCAATTT   0.511           -          -          -          -          
546         17    50313691       7217899    18266    AATTAGGGAAYACTATTTGCA   1.395           0.773      -          -          -          
546         17    50314685       2958927    18267    GACAGCTCCAYGTATGTTATT   0.412           3.210      2.283      -          -          
546         17    50320792       2958921    18268    ATCTCCCAACRTAGCCAATAT   4.330           2.254      2.399      1.793      -          
546         17    50326693       8082441    18269    AAGCCAAATGYGTAATTATAC   0.589           2.571      1.796      -          -          
546         17    50330822       8064660    18270    AAGACATCAGRCTCAATAAAC   0.425           1.059      -          -          -          
546         17    50330891       2958915    18271    AGTCAAACTTKAGTGAAGCCA   0.535           -          -          -          -          
547         20    3923106        2078382    18851    AGAGTTATTTMATTTGTTTTA   0.053           2.856      3.425      3.547      -          
547         20    3933917        1028366    18852    GCTTTTTAGTRTAGGTTAACC   0.055           3.144      4.023      2.239      2.015      
547         20    3935738        6107393    18853    GCAGAGCAAAYGCTAAGTCAA   4.521           2.804      2.804      2.387      1.201      
547         20    3942609        2143234    18854    AGAGCTGGTGYTATCCCAATA   0.116           2.688      2.539      1.600      0.847      
547         20    3966579        6052257    18855    TATTCTGTCCRCCACATGCCC   1.281           1.679      2.497      1.669      1.328      
547         20    3980518        17288731   18856    GAGTTCAGTGYAGGCTTGGGA   2.813           1.618      1.087      1.385      -          
547         20    3987627        6139278    18857    AGTCAGTCAAYCAAGCAAGCA   0.579           1.636      1.648      -          -          
547         20    3988828        6076595    18858    TTTGATCAAAYATATCAAATC   0.374           0.286      -          -          -          
