Table 33.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with schizophrenia from the analysis of genome wide scan (GWS) data:
PTPRD-1_cr1_not. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers and for the most highly associated multi-marker 
haplotypes centered at the reference marker and defined by the sliding windows of specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        
650         10    95371358       2077733    16334    GTGGGCCACCRATACTGGATT   1.308           -          -          -          -          
650         10    95376197       2785137    16335    TAGATAAACARCCAATAATAT   0.112           0.454      -          -          -          
650         10    95377847       7080650    16336    TGGAAATTGGYAACTGATACA   0.034           0.113      0.295      -          -          
650         10    95385237       616522     16337    CCTTTTATCCRTTTCAGACTC   0.182           0.007      1.118      1.404      -          
650         10    95388605       659145     16338    GTGTGAGGGGYCAGCCCAGGC   0.256           1.700      2.214      5.465      4.845      
650         10    95392963       3781273    16339    TGAAGTTGCCRTCTTGCCTCC   1.624           2.052      7.770      5.080      4.226      
650         10    95395804       1409332    16340    GGTACGTAAAMCTCTCTTTAG   1.690           2.328      3.620      6.715      4.105      
650         10    95399752       11187573   16341    TCTATCATCCRAGTAATTGCT   1.158           2.468      4.079      3.152      5.564      
650         10    95402205       10882294   16342    TGAAAATGAGYGAGAAGAAAA   3.202           2.349      2.894      3.719      3.195      
650         10    95416878       11187579   16343    TATGTACACTMAAATGAGTAT   0.000           2.703      3.080      3.302      3.866      
650         10    95422852       1572772    16344    TGCCAATCCARTCCATGCTGG   0.773           0.522      3.442      2.788      -          
650         10    95423114       1326214    16345    CAGTTCCTCCRACATTCTTCC   0.563           0.369      0.495      -          -          
650         10    95424642       3740369    16346    ACTAAAATACRCTCTCCCACT   0.773           0.353      -          -          -          
650         10    95429812       1409337    16347    GGTCCAACCTYAGCCCTGAAC   0.723           -          -          -          -          
651         13    29033331       478085     17049    ACACTAATGAMGGCAGCACAC   0.033           -          -          -          -          
651         13    29038981       6490411    17050    CCCACTAACCRTGACAGGCAG   0.300           0.069      -          -          -          
651         13    29054317       280936     17051    GCTGCTTGCCRCTCGGCTAAT   0.361           0.510      0.336      -          -          
651         13    29061015       9551699    17052    GGAGAAGGGCRAAAGGGATGA   0.881           0.628      0.359      2.972      -          
651         13    29062630       7981502    17053    GTCACTGAGCRCAAGGTGCAT   0.871           0.376      3.319      3.419      2.046      
651         13    29070495       9551705    17054    CTTCTCAGCARAAAGGATTCA   0.195           2.889      4.279      2.990      2.398      
651         13    29074650       9579422    17055    AGGAACATTCYACCCATGTCA   5.272           4.444      3.712      3.131      2.631      
651         13    29080114       1553952    17056    ACCTGATCCCRACCAGCAGGG   6.446           4.799      4.676      2.881      -          
651         13    29085286       17073762   17057    GCTCTCATTCYCTCACTTAAC   0.268           4.712      5.301      -          -          
651         13    29092288       280942     17058    CTTCCCATTCYTCTTTCTAAA   0.159           0.041      -          -          -          
651         13    29097641       9579431    17059    CCTACAGGAGYGTTCAGGCCA   0.089           -          -          -          -          
652         16    83715115       1110289    18057    GAGTGTGAGCRAGGAAAGTGG   0.042           -          -          -          -          
652         16    83722102       2062550    18058    TTGCCTCTCTYCTCGGGTGGG   0.363           0.163      -          -          -          
652         16    83727618       3751757    18059    TTGTTTAACCYCCTTCCTGCG   0.986           4.367      4.348      -          -          
652         16    83732810       1875250    18060    AGGCAGATGCRGCGGCCAAGA   6.294           5.585      4.512      1.762      -          
652         16    83733564       2937134    18061    CAGCTGGCAGRAATGACATGG   0.375           5.522      4.287      2.826      -          
652         16    83734490       16975301   18062    AGCTTTAACCRCTGCATGCAG   0.957           0.424      4.647      -          -          
652         16    83735148       9925768    18063    AGGGAGTGCCRTGCGGGGCAG   0.373           0.697      -          -          -          
652         16    83735330       868353     18064    TCCTGGGCCAYGGGAAACAGC   0.592           -          -          -          -          
653         17    45406771       1058564    18213    TTGCACAACCYATTTGTGAGC   0.904           -          -          -          -          
653         17    45414776       4793624    18214    TAGTGTGGGTRATGGGCTGGA   0.289           0.344      -          -          -          
653         17    45425224       3891034    18215    CTCTCTTGAGYGTTCAAGTGC   0.971           1.871      1.736      -          -          
653         17    45431434       11079884   18216    TATCTGAAATRAGAAGTGAAG   0.471           2.013      3.108      2.368      -          
653         17    45445248       11079887   18217    CCACAATATGMAGAGAAGAAT   2.746           1.907      1.629      3.756      3.493      
653         17    45458934       890397     18218    AAGGACCCACYCTGAGACAAA   0.268           2.639      2.825      3.319      5.481      
653         17    45464167       2098911    18219    AAGTTGATTCYAAAATTTGTA   1.023           2.572      6.429      7.630      5.178      
653         17    45467022       7218709    18220    GACACAGTTCRGAGCAAACAG   0.151           0.987      9.859      9.301      4.372      
653         17    45468251       919090     18221    TCCAGGCTGGRGGAGGAGCAG   2.026           2.776      2.374      5.184      3.642      
653         17    45471784       1015260    18222    GAGAAGCTCCYGTTCCTAGAG   0.580           1.541      1.076      1.326      2.723      
653         17    45477960       199146     18223    AGCCCAGAGTYTGAGGTCCTT   1.004           0.341      1.429      2.237      1.931      
653         17    45478168       199145     18224    GGGGATTAGGRCCAAACAGGC   0.085           0.869      0.787      2.169      2.801      
653         17    45479347       199144     18225    TGGGTAAGGGKTCCTCCACAG   0.782           2.180      2.552      3.053      1.887      
653         17    45479581       16948609   18226    CATTTGTACCKCGGGGCCAGA   0.029           0.596      1.557      2.067      2.312      
653         17    45480626       17774745   18227    TAGAAGCTCAMGAAAGATTTT   0.444           0.032      1.836      2.192      2.008      
653         17    45483225       199141     18228    TTAGAAAGTARCACACGTAAA   0.035           0.960      1.553      1.049      -          
653         17    45486194       9895410    18229    AAAGACACGGYTGTGGTCAGC   1.717           1.039      1.213      -          -          
653         17    45487642       4794094    18230    CCTCTGGGATYCTGCTGGGCT   1.848           1.596      -          -          -          
653         17    45495506       4793637    18231    GGTATGGGACRGGTTGCCAGG   0.034           -          -          -          -          
