Table 25.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with schizophrenia from the analysis of genome wide scan (GWS) data:
Male_Affected. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers (both T test and Permutation test p-values are
displayed; see Example section) and for the most highly associated multi-marker haplotypes centered
at the reference marker and defined by the sliding windows of specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   ldstatv4        ldstatv4   ldstatv4   ldstatv4   ldstatv4   singletype                         singletype                       
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        Single Marker   W03        W05        W07        W09        Single Genotype Likelihood Ratio   Single Allele Likelihood Ratio   
302         9     1782147        2068428    15485    TGTGCCAGGCYTCTGTCATAG   0.022           -          -          -          -          0.000           -          -          -          -          0.009                              0.000                            
302         9     1783408        3912096    15486    TCCTCACTGCRACTGTCATTT   0.590           3.765      -          -          -          0.541           4.069      -          -          -          0.361                              0.551                            
302         9     1788170        3847227    15487    GGAAAGCGAARGGAAGTCTTA   5.559           5.017      5.122      -          -          5.444           5.119      4.172      -          -          4.723                              5.437                            
302         9     1788324        16934185   15488    GCACTCGTATRCATGTCAGCT   6.141           5.847      5.458      4.022      -          6.222           7.000      4.360      3.520      -          4.966                              5.976                            
302         9     1788737        4740650    15489    AGGCAGTAAGYGCCTCTAATG   5.410           5.346      8.469      5.141      2.655      5.328           5.721      5.620      4.293      2.424      4.579                              5.290                            
302         9     1788805        3847228    15490    TTTATTCATCYATGTGTTAAC   2.170           4.944      6.856      5.250      2.710      2.068           5.658      5.155      4.288      2.525      1.647                              2.104                            
302         9     1805727        10117983   15491    TCCCTGGCTCYTTGTTCTCAC   1.014           1.424      3.976      5.352      3.901      0.909           1.443      3.486      4.686      3.453      0.604                              1.014                            
302         9     1813605        7045455    15492    ATTGCAAAACYGATTCCCATA   0.444           0.434      4.009      3.991      5.818      0.371           0.435      3.532      3.470      5.155      0.492                              0.444                            
302         9     1827769        17654966   15493    TCCATGTGTAKCCCAAAGAAT   0.032           3.839      3.856      4.778      5.162      0.000           4.356      3.471      4.306      4.587      0.474                              0.000                            
302         9     1832469        7020364    15494    GATGCCAATAYACCTTTTTGT   3.254           2.948      3.487      3.422      -          3.135           3.170      3.024      3.137      -          2.512                              3.272                            
302         9     1835111        973494     15495    GTCTTCCTTAYGTGTCCGAAA   3.939           2.787      2.873      -          -          3.834           3.074      2.677      -          -          3.114                              3.804                            
302         9     1839664        7019385    15496    ACTGCTTTTCRCTGTCTTCTC   2.396           2.552      -          -          -          2.292           2.823      -          -          -          2.185                              2.396                            
302         9     1866496        10963717   15497    ACAGAATGGARAAACTATGAA   0.257           -          -          -          -          0.225           -          -          -          -          0.074                              0.258                            
303         13    29054317       280936     17051    GCTGCTTGCCRCTCGGCTAAT   0.045           -          -          -          -          0.000           -          -          -          -          0.278                              0.045                            
303         13    29061015       9551699    17052    GGAGAAGGGCRAAAGGGATGA   0.429           0.765      -          -          -          0.374           0.788      -          -          -          0.333                              0.429                            
303         13    29062630       7981502    17053    GTCACTGAGCRCAAGGTGCAT   1.260           1.013      3.797      -          -          1.177           0.999      3.345      -          -          0.796                              1.261                            
303         13    29070495       9551705    17054    CTTCTCAGCARAAAGGATTCA   0.548           3.705      3.944      2.857      -          0.506           4.190      3.255      2.511      -          0.933                              0.548                            
303         13    29074650       9579422    17055    AGGAACATTCYACCCATGTCA   6.466           4.670      3.523      2.295      2.170      6.398           5.523      2.944      2.129      2.009      5.612                              6.468                            
303         13    29080114       1553952    17056    ACCTGATCCCRACCAGCAGGG   6.089           4.761      4.553      2.687      2.305      6.000           5.260      3.701      2.407      2.097      5.343                              6.090                            
303         13    29085286       17073762   17057    GCTCTCATTCYCTCACTTAAC   0.350           4.333      5.510      3.875      -          0.286           4.712      4.470      3.145      -          0.676                              0.354                            
303         13    29092288       280942     17058    CTTCCCATTCYTCTTTCTAAA   0.806           0.480      4.891      -          -          0.744           0.493      4.012      -          -          1.669                              0.762                            
303         13    29097641       9579431    17059    CCTACAGGAGYGTTCAGGCCA   0.695           0.382      -          -          -          0.554           0.300      -          -          -          0.428                              0.695                            
303         13    29124924       489679     17060    TATTATCCACRTAGTGTCCTT   0.805           -          -          -          -          0.755           -          -          -          -          1.667                              0.762                            
