Table 28.1 Male_more_than_20. Genome wide association study results in the Quebec Founder
Population (QFP). SNP markers found to be associated with schizophrenia from the analysis of genome
wide scan (GWS) data: Male_more_than_20. Columns include: Region ID; Chromosome; Build 36 location
in base pairs (bp); rs#, dbSNP data base (NCBI) reference number; Sequence ID, unique numerical
identifier for this patent application; Sequence, 21 bp of sequence covering 10 base pair of unique
sequence flanking either side of central polymorphic SNP; - log10 P values for GWS, - log10 of the
P value for statistical significance from the GWS for single SNP markers (both T test and
Permutation test p-values are displayed; see Example section) and for the most highly associated
multi-marker haplotypes centered at the reference marker and defined by the sliding windows of
specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   ldstatv4        ldstatv4   ldstatv4   ldstatv4   ldstatv4   singletype                         singletype                       
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        Single Marker   W03        W05        W07        W09        Single Genotype Likelihood Ratio   Single Allele Likelihood Ratio   
369         6     93737778       688198     14575    CTACAGAAAGYGGCTTCAAAG   0.144           -          -          -          -          0.104           -          -          -          -          0.211                              0.144                            
369         6     93740389       12211442   14576    ATGATTTCACYGTGGGAAAAA   0.958           0.754      -          -          -          0.818           0.732      -          -          -          1.381                              0.958                            
369         6     93742965       655096     14577    CCTTCAAGTGYACAGTCTCTT   0.812           0.478      1.635      -          -          0.764           0.485      1.608      -          -          0.522                              0.812                            
369         6     93754121       495976     14578    CTCAACTGCARAAGGTGGATG   0.758           1.480      2.243      3.514      -          0.682           1.563      2.121      3.280      -          0.824                              0.758                            
369         6     93754453       2485800    14579    TCTTCTTGCTRTGTCTCAGCC   3.244           2.222      3.428      3.928      4.032      3.113           2.285      3.148      3.585      3.691      2.880                              3.244                            
369         6     93758862       677242     14580    TTTACATGAAYGTCACCTAGT   1.739           3.955      3.706      2.863      3.065      1.678           4.230      3.368      2.674      2.829      1.495                              1.850                            
369         6     93760921       2762448    14581    ACATTATACARTGAGGACTCT   0.561           4.839      6.416      4.303      3.839      0.541           5.187      4.799      3.748      3.407      0.269                              0.561                            
369         6     93770526       652520     14582    ATCCACCTTAYGGGAAAGATG   0.303           0.216      6.834      5.864      2.782      0.287           0.204      4.660      4.349      2.602      0.099                              0.303                            
369         6     93773300       10455181   14583    CAAATAGTTCRTAAAGGATTA   0.295           1.640      7.116      4.070      1.732      0.228           1.829      4.697      3.353      1.684      0.397                              0.295                            
369         6     93775461       9918469    14584    CCATGGAGAGYCATTTTAGAG   2.919           4.367      4.528      2.272      2.272      2.771           4.818      3.902      2.126      2.126      2.312                              2.919                            
369         6     93778968       1969811    14585    AGTGTGAACTRTGGGAAAATT   6.039           4.866      3.134      2.480      2.211      6.000           5.456      2.894      2.334      2.089      5.120                              6.039                            
369         6     93784921       9452184    14586    TGCTAGAGAGKTCTACATGCA   1.913           4.638      4.955      3.634      2.398      1.860           4.900      4.365      3.362      2.282      1.546                              1.838                            
369         6     93787978       2485806    14587    TAAAAGATTTRATGAAGTAAT   0.055           1.075      5.786      4.988      -          0.028           1.057      4.924      4.330      -          0.371                              0.055                            
369         6     93797760       1324142    14588    CTGTTACTTGKGTAGTAGAAA   0.055           1.112      1.242      -          -          0.016           1.188      1.184      -          -          0.371                              0.055                            
369         6     93797864       6932844    14589    TAGGTAGGTTRAGTACTTAAT   1.288           1.112      -          -          -          1.225           1.225      -          -          -          0.849                              1.288                            
369         6     93798141       2476893    14590    AGTTTAATATRTCCTCACTTA   0.055           -          -          -          -          0.029           -          -          -          -          0.371                              0.055                            
