Table 29.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with schizophrenia from the analysis of genome wide scan (GWS) data:
CIAS1-1-cr2_not. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers.

                                                                             ldstatv2        
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   
411         1     57906757       4483433    11698    GGCATAATTTYGAAATGTGTT   1.170           
411         1     57935957       3126020    11699    ACATACCCTGKGAATGATTAC   0.869           
411         1     57954739       1575512    11700    CGAAAATACAYATTGGGGAAA   5.454           
411         1     57957630       12030998   11701    GAAGCCATAARCCAGAGGGAG   1.250           
411         1     57961084       4912277    11702    TGAGGCTACAYTGAGCAGGAG   1.432           
412         1     157427903      862989     11777    TAGTTTTAGGRTTATTAGTCA   0.493           
412         1     157430988      862991     11778    AGAGATGAGCRTGGGGATCAC   1.019           
412         1     157441544      863002     11779    CTTTTTCCTTYTCTCCTTCCT   1.311           
412         1     157441978      12075      11780    GGAGACTATGRTGCCAACCTG   0.020           
412         1     157450337      3027048    11781    AGAAAGCATTYCCTGAATTGG   5.506           
412         1     157458272      3027077    11782    GTCTTGGCTTYCATGATATTT   1.257           
412         1     157461036      10489848   11783    TTACTGGGAAMATGATCAGCC   1.200           
412         1     157463389      10489849   11784    TCTCATGACCYAACTTTCTGA   2.688           
412         1     157466644      863013     11785    GAAAGCTTTAKGGGTCTTGCA   3.716           
412         1     157484890      3845624    11786    GAATGTATGTMCCTGCCAAAT   5.389           
412         1     157495002      10908702   11787    TGTGGCTACTYTACATCTTTC   4.193           
412         1     157499699      2427832    11788    ACTTAATTTTRTTTAGTAGGA   0.841           
412         1     157515483      10489854   11789    GCCAATAGCAYGGTGAAGGGC   0.575           
412         1     157521388      2427836    11790    TGAGCACTGCYTATTGCATTT   1.409           
412         1     157532690      2427825    11791    CCTCTGCTACYTACACACACA   1.332           
412         1     157533879      7548864    11792    AATAATTATARTATTCATGAA   0.465           
413         4     104089540      13137892   13346    CATGTACCAARCCTGCATATG   0.116           
413         4     104117424      17033384   13347    AAGTGTCTTGRATGCTTTGCT   0.622           
413         4     104149960      4698874    13348    AGCAAAACTTYATGGCCAACT   2.688           
413         4     104161614      10516496   13349    TTCCTCGTTTYAGGAGAGTAG   2.122           
413         4     104162163      10516497   13350    TAAATTGATTMTATTTGCAAC   4.889           
413         4     104164191      11946020   13351    CATAGTCTTAYAGCAATTAAT   2.191           
413         4     104183978      2276976    13352    AGGGAAACCAMAATGCACACT   0.445           
413         4     104193571      13113099   13353    GATTTGGCACRTGTCCCCACT   1.554           
414         4     104229476      10516498   13356    CACCTCTATAYGCTGAAGACT   0.340           
414         4     104234763      11726284   13357    TAGGGTTTCTYATGATGATGT   0.035           
414         4     104239871      6830624    13358    AGCCTTTCTAYGCACTCTGAA   0.044           
414         4     104267802      12505908   13359    AAAATCAAAGRTAAAAAAAAA   0.640           
414         4     104274135      2720460    13360    AGGTCTGAAGRGAGGCTAGTC   1.831           
414         4     104278991      2243682    13361    CAGGCTTTCCRTAAGGTGCTG   4.254           
414         4     104285910      2615542    13362    TTTATATTAARTTGTTCCTCT   4.254           
414         4     104323688      3765086    13363    AATCATATGTRTAAGTTTTTG   0.544           
414         4     104333746      4699050    13364    GATGGAACACRAATGACAGAG   1.831           
414         4     104357239      4699052    13365    GCATGTAGGAYCGTTAAAGGT   1.946           
414         4     104398495      7663545    13366    TATACTGCTAYGTAGTGGTAC   5.453           
414         4     104413213      6533075    13367    AAAAACAATCRTCCTATTCAC   0.910           
414         4     104428735      1516736    13368    TTTCATGTGGYACCTGTGGTA   0.910           
414         4     104433739      10516501   13369    TGAATCACTARAGCAAGAATC   0.656           
414         4     104459704      10213404   13370    GCTACTCAATMTACATCCATA   1.506           
415         11    15244475       12273915   16464    GAACTGCATTKGCCTTCATAG   0.773           
415         11    15244846       10832384   16465    GCTTTCATCAKAAAGTGGAAA   0.049           
415         11    15256698       7928484    16466    TGAACTGGACRCTTTACTCAC   5.076           
415         11    15258338       11826924   16467    CTTCCAAATGYAGAGCTCAAT   3.318           
415         11    15267557       10766227   16468    GAGGTCTAGTYCAAGCCAGCA   0.366           
415         11    15277675       11023514   16469    GACCTGCACAMAGGTACACAT   3.505           
415         11    15279532       1320211    16470    CAATCTGTGCYTGACCGTGTG   0.889           
416         13    29033331       478085     17049    ACACTAATGAMGGCAGCACAC   0.236           
416         13    29038981       6490411    17050    CCCACTAACCRTGACAGGCAG   0.438           
416         13    29054317       280936     17051    GCTGCTTGCCRCTCGGCTAAT   0.208           
416         13    29061015       9551699    17052    GGAGAAGGGCRAAAGGGATGA   1.032           
416         13    29062630       7981502    17053    GTCACTGAGCRCAAGGTGCAT   1.186           
416         13    29070495       9551705    17054    CTTCTCAGCARAAAGGATTCA   0.192           
416         13    29074650       9579422    17055    AGGAACATTCYACCCATGTCA   5.833           
416         13    29080114       1553952    17056    ACCTGATCCCRACCAGCAGGG   6.839           
416         13    29085286       17073762   17057    GCTCTCATTCYCTCACTTAAC   0.175           
416         13    29092288       280942     17058    CTTCCCATTCYTCTTTCTAAA   1.114           
416         13    29097641       9579431    17059    CCTACAGGAGYGTTCAGGCCA   0.146           
416         13    29124924       489679     17060    TATTATCCACRTAGTGTCCTT   1.113           
417         15    95842449       12591344   17849    AAAATAAGACRGTGTATAAGT   0.521           
417         15    95854088       2088783    17850    AAATGCTTCTYCTTCAAATTG   0.841           
417         15    95854754       7166516    17851    AAAATATAACMGGTAATGAAT   5.283           
417         15    95855323       8029901    17852    TTTTTAATGTYCCATGTTTTT   0.088           
417         15    95856649       8030108    17853    GTCAATTCAGYGAGAAGAAAA   1.349           
418         16    83715115       1110289    18057    GAGTGTGAGCRAGGAAAGTGG   0.315           
418         16    83722102       2062550    18058    TTGCCTCTCTYCTCGGGTGGG   0.727           
418         16    83727618       3751757    18059    TTGTTTAACCYCCTTCCTGCG   0.116           
418         16    83732810       1875250    18060    AGGCAGATGCRGCGGCCAAGA   5.969           
418         16    83733564       2937134    18061    CAGCTGGCAGRAATGACATGG   0.368           
418         16    83734490       16975301   18062    AGCTTTAACCRCTGCATGCAG   0.825           
418         16    83735148       9925768    18063    AGGGAGTGCCRTGCGGGGCAG   0.240           
418         16    83735330       868353     18064    TCCTGGGCCAYGGGAAACAGC   0.388           
419         20    51960247       6068717    19005    GTTTAAAATCMCCACCCAGAC   0.563           
419         20    51961513       1476720    19006    TCACAAATTCYGAAGTGGTAG   1.225           
419         20    51962634       7269891    19007    TTTGCAAGGCYATCTGAGAGG   0.060           
419         20    51965103       6097667    19008    GAAATTATGCYCAATAAGGAA   2.081           
419         20    51971880       6068723    19009    TTAATGTTAARAGGAAAAGTG   0.492           
419         20    51974013       6127015    19010    TAGGGAGCTAYAGACACAAGC   2.922           
419         20    51989384       6123328    19011    AAAGATGTTAYACAACACCTA   5.032           
419         20    51989830       6022863    19012    CCTTATCTTCRTTTGGAGGAC   2.272           
419         20    51994050       1952       19013    TGAAAAACAAYGCTTATTCAT   0.445           
419         20    51994876       1055246    19014    GTTTACTTGGRTTTGCCAACT   0.057           
419         20    51995109       4811486    19015    TGCCCGGGTTYGATACCCAGT   0.240           
420         X     33085600       5972765    19253    AACTGACTGCYGTCAATCTCT   0.419           
420         X     33103731       6527265    19254    TAATAGTTCTMAGAAAGGAAT   0.153           
420         X     33108693       7877938    19255    GCCCAATCAGRACACTGTACT   0.659           
420         X     33115333       7065919    19256    CAACATTGCCYAAACATTTCT   4.989           
420         X     33119101       5928196    19257    AGGAAGTCAGYATTGATGATT   0.852           
420         X     33125998       5972773    19258    GGCTGTATGGYGACTGCATGT   0.544           
420         X     33134441       971642     19259    GGAAATGACARCTCCATTTCA   0.370           
