                         SEQUENCE LISTING

<110>  RUTGERS, THE STATE UNIVERSITY
 
<120>  HIV REVERSE TRANSCRIPTASE COMPOSITIONS AND METHODS

<130>  PA080219S7

<150>  US 60/905,168
<151>  2007-03-06

<160>  128   

<170>  PatentIn version 3.5

<210>  1
<211>  557
<212>  PRT
<213>  HIV

<400>  1

Met Val Pro Ile Ser Pro Ile Glu Thr Val Pro Val Lys Leu Lys Pro 
1               5                   10                  15      


Gly Met Asp Gly Pro Lys Val Lys Gln Trp Pro Leu Thr Glu Glu Lys 
            20                  25                  30          


Ile Lys Ala Leu Val Glu Ile Cys Thr Glu Met Glu Lys Glu Gly Lys 
        35                  40                  45              


Ile Ser Lys Ile Gly Pro Glu Asn Pro Tyr Asn Thr Pro Val Phe Ala 
    50                  55                  60                  


Ile Lys Lys Lys Asp Ser Thr Lys Trp Arg Lys Leu Val Asp Phe Arg 
65                  70                  75                  80  


Glu Leu Asn Lys Arg Thr Gln Asp Phe Trp Glu Val Gln Leu Gly Ile 
                85                  90                  95      


Pro His Pro Ala Gly Leu Lys Lys Lys Lys Ser Val Thr Val Leu Asp 
            100                 105                 110         


Val Gly Asp Ala Tyr Phe Ser Val Pro Leu Asp Glu Asp Phe Arg Lys 
        115                 120                 125             


Tyr Thr Ala Phe Thr Ile Pro Ser Ile Asn Asn Glu Thr Pro Gly Ile 
    130                 135                 140                 


Arg Tyr Gln Tyr Asn Val Leu Pro Gln Gly Trp Lys Gly Ser Pro Ala 
145                 150                 155                 160 


Ile Phe Gln Ser Ser Met Thr Lys Ile Leu Glu Pro Phe Ala Ala Gln 
                165                 170                 175     


Asn Pro Asp Ile Val Ile Tyr Gln Tyr Met Asp Asp Leu Tyr Val Gly 
            180                 185                 190         


Ser Asp Leu Glu Ile Gly Gln His Arg Thr Lys Ile Glu Glu Leu Arg 
        195                 200                 205             


Gln His Leu Leu Arg Trp Gly Leu Thr Thr Pro Asp Lys Lys His Gln 
    210                 215                 220                 


Lys Glu Pro Pro Phe Leu Trp Met Gly Tyr Glu Leu His Pro Asp Lys 
225                 230                 235                 240 


Trp Thr Val Gln Pro Ile Val Leu Pro Glu Lys Asp Ser Trp Thr Val 
                245                 250                 255     


Asn Asp Ile Gln Lys Leu Val Gly Lys Leu Asn Trp Ala Ser Gln Ile 
            260                 265                 270         


Tyr Pro Gly Ile Lys Val Arg Gln Leu Ser Lys Leu Leu Arg Gly Thr 
        275                 280                 285             


Lys Ala Leu Thr Glu Val Ile Pro Leu Thr Glu Glu Ala Glu Leu Glu 
    290                 295                 300                 


Leu Ala Glu Asn Arg Glu Ile Leu Lys Glu Pro Val His Gly Val Tyr 
305                 310                 315                 320 


Tyr Asp Pro Ser Lys Asp Leu Ile Ala Glu Ile Gln Lys Gln Gly Gln 
                325                 330                 335     


Gly Gln Trp Thr Tyr Gln Ile Tyr Gln Glu Pro Phe Lys Asn Leu Lys 
            340                 345                 350         


Thr Gly Lys Tyr Ala Arg Met Arg Gly Ala His Thr Asn Asp Val Lys 
        355                 360                 365             


Gln Leu Thr Glu Ala Val Gln Lys Ile Thr Thr Glu Ser Ile Val Ile 
    370                 375                 380                 


Trp Gly Lys Thr Pro Lys Phe Lys Leu Pro Ile Gln Lys Glu Thr Trp 
385                 390                 395                 400 


Glu Thr Trp Trp Thr Glu Tyr Trp Gln Ala Thr Trp Ile Pro Glu Trp 
                405                 410                 415     


Glu Phe Val Asn Thr Pro Pro Leu Val Lys Leu Trp Tyr Gln Leu Glu 
            420                 425                 430         


Lys Glu Pro Ile Val Gly Ala Glu Thr Phe Tyr Val Asp Gly Ala Ala 
        435                 440                 445             


Asn Arg Glu Thr Lys Leu Gly Lys Ala Gly Tyr Val Thr Asn Lys Gly 
    450                 455                 460                 


Arg Gln Lys Val Val Pro Leu Thr Asn Thr Thr Asn Gln Lys Thr Glu 
465                 470                 475                 480 


Leu Gln Ala Ile Tyr Leu Ala Leu Gln Asp Ser Gly Leu Glu Val Asn 
                485                 490                 495     


Ile Val Thr Asp Ser Gln Tyr Ala Leu Gly Ile Ile Gln Ala Gln Pro 
            500                 505                 510         


Asp Lys Ser Glu Ser Glu Leu Val Asn Gln Ile Ile Glu Gln Leu Ile 
        515                 520                 525             


Lys Lys Glu Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys Gly Ile 
    530                 535                 540                 


Gly Gly Asn Glu Gln Val Asp Lys Leu Val Ser Ala Gly 
545                 550                 555         


<210>  2
<211>  443
<212>  PRT
<213>  HIV

<400>  2

Met Ala His His His His His His Ala Leu Glu Val Leu Phe Gln Gly 
1               5                   10                  15      


Pro Ile Ser Pro Ile Glu Thr Val Pro Val Lys Leu Lys Pro Gly Met 
            20                  25                  30          


Asp Gly Pro Lys Val Lys Gln Trp Pro Leu Thr Glu Glu Lys Ile Lys 
        35                  40                  45              


Ala Leu Val Glu Ile Cys Thr Glu Met Glu Lys Glu Gly Lys Ile Ser 
    50                  55                  60                  


Lys Ile Gly Pro Glu Asn Pro Tyr Asn Thr Pro Val Phe Ala Ile Lys 
65                  70                  75                  80  


Lys Lys Asp Ser Thr Lys Trp Arg Lys Leu Val Asp Phe Arg Glu Leu 
                85                  90                  95      


Asn Lys Arg Thr Gln Asp Phe Trp Glu Val Gln Leu Gly Ile Pro His 
            100                 105                 110         


Pro Ala Gly Leu Lys Lys Lys Lys Ser Val Thr Val Leu Asp Val Gly 
        115                 120                 125             


Asp Ala Tyr Phe Ser Val Pro Leu Asp Glu Asp Phe Arg Lys Tyr Thr 
    130                 135                 140                 


Ala Phe Thr Ile Pro Ser Ile Asn Asn Glu Thr Pro Gly Ile Arg Tyr 
145                 150                 155                 160 


Gln Tyr Asn Val Leu Pro Gln Gly Trp Lys Gly Ser Pro Ala Ile Phe 
                165                 170                 175     


Gln Ser Ser Met Thr Lys Ile Leu Glu Pro Phe Lys Lys Gln Asn Pro 
            180                 185                 190         


Asp Ile Val Ile Tyr Gln Tyr Met Asp Asp Leu Tyr Val Gly Ser Asp 
        195                 200                 205             


Leu Glu Ile Gly Gln His Arg Thr Lys Ile Glu Glu Leu Arg Gln His 
    210                 215                 220                 


Leu Leu Arg Trp Gly Leu Thr Thr Pro Asp Lys Lys His Gln Lys Glu 
225                 230                 235                 240 


Pro Pro Phe Leu Trp Met Gly Tyr Glu Leu His Pro Asp Lys Trp Thr 
                245                 250                 255     


Val Gln Pro Ile Val Leu Pro Glu Lys Asp Ser Trp Thr Val Asn Asp 
            260                 265                 270         


Ile Gln Lys Leu Val Gly Lys Leu Asn Trp Ala Ser Gln Ile Tyr Pro 
        275                 280                 285             


Gly Ile Lys Val Arg Gln Leu Cys Lys Leu Leu Arg Gly Thr Lys Ala 
    290                 295                 300                 


Leu Thr Glu Val Ile Pro Leu Thr Glu Glu Ala Glu Leu Glu Leu Ala 
305                 310                 315                 320 


Glu Asn Arg Glu Ile Leu Lys Glu Pro Val His Gly Val Tyr Tyr Asp 
                325                 330                 335     


Pro Ser Lys Asp Leu Ile Ala Glu Ile Gln Lys Gln Gly Gln Gly Gln 
            340                 345                 350         


Thr Tyr Gln Ile Tyr Gln Glu Pro Phe Lys Asn Leu Lys Thr Gly Lys 
        355                 360                 365             


Tyr Ala Arg Met Arg Gly Ala His Thr Asn Asp Val Lys Gln Leu Thr 
    370                 375                 380                 


Glu Ala Val Gln Lys Ile Thr Thr Glu Ser Ile Val Ile Trp Gly Lys 
385                 390                 395                 400 


Thr Pro Lys Phe Lys Leu Pro Ile Gln Lys Glu Thr Trp Glu Thr Trp 
                405                 410                 415     


Trp Thr Glu Tyr Trp Gln Ala Thr Trp Ile Pro Glu Trp Glu Phe Val 
            420                 425                 430         


Asn Thr Pro Pro Leu Val Lys Leu Trp Tyr Gln 
        435                 440             


<210>  3
<211>  6662
<212>  DNA
<213>  HIV

<400>  3
aacgccaatc agcaacgact gtttgcccgc cagttgttgt gccacgcggt tgggaatgta       60

attcagctcc gccatcgccg cttccacttt ttcccgcgtt ttcgcagaaa cgtggctggc      120

ctggttcacc acgcgggaaa cggtctgata agagacaccg gcatactctg cgacatcgta      180

taacgttact ggtttcacat tcaccaccct gaattgactc tcttccgggc gctatcatgc      240

cataccgcga aaggttttgc gccattcgat ggtgtccggg atctcgacgc tctcccttat      300

gcgactcctg cattaggaaa ttaatacgac tcactatagg ggaattgtga gcggataaca      360

attcccctgt agaaataatt ttgtttaact ttaataagga gatataccat ggcacatcac      420

caccaccatc acgctcttga agtcctcttt cagggaccca ttagccctat tgagactgta      480

ccagtaaaat taaagccagg aatggatggc ccaaaagtta aacaatggcc attgacagaa      540

gaaaaaataa aagcattagt agaaatttgt acagaaatgg aaaaggaagg gaaaatttca      600

aaaattgggc ctgagaatcc atacaatact ccagtatttg ccataaagaa aaaagacagt      660

actaaatgga gaaaattagt agatttcaga gaacttaata agagaactca agacttctgg      720

gaagttcaat taggaatacc acatcccgca gggttaaaaa agaaaaaatc agtaacagta      780

ctggatgtgg gtgatgcata tttttcagtt cccttagatg aagacttcag gaagtatact      840

gcatttacca tacctagtat aaacaatgag acaccaggga ttagatatca gtacaatgtg      900

cttccacagg gatggaaagg atcaccagca atattccaaa gtagcatgac aaaaatctta      960

gagcctttta aaaaacaaaa tccagacata gttatctatc aatacatgga tgatttgtat     1020

gtaggatctg acttagaaat agggcagcat agaacaaaaa tagaggagct gagacaacat     1080

ctgttgaggt ggggacttac cacaccagac aaaaaacatc agaaagaacc tccattcctt     1140

tggatgggtt atgaactcca tcctgataaa tggacagtac agcctatagt gctgccagaa     1200

aaagacagct ggactgtcaa tgacatacag aagttagtgg ggaaattgaa ttgggcaagt     1260

cagatttacc cagggattaa agtaaggcaa ttatgtaaac tccttagagg aaccaaagca     1320

ctaacagaag taataccact aacagaagaa gcagagctag aactggcaga aaacagagag     1380

attctaaaag aaccagtaca tggagtgtat tatgacccat caaaagactt aatagcagaa     1440

atacagaagc aggggcaagg ccaatggaca tatcaaattt atcaagagcc atttaaaaat     1500

ctgaaaacag gaaaatatgc aagaatgagg ggtgcccaca ctaatgatgt aaaacaatta     1560

acagaggcag tgcaaaaaat aaccacagaa agcatagtaa tatggggaaa gactcctaaa     1620

tttaaactac ccatacaaaa ggaaacatgg gaaacatggt ggacagagta ttggcaagcc     1680

acctggattc ctgagtggga gtttgttaat acccctcctt tagtgaaatt atggtaccag     1740

taagagctct ctagagagct ggctcccggg gggatcccgg ccgcccgcgt tgatctcgat     1800

cccgcgaaat taatacgact cactataggg gaattgtgag cggataacaa ttcccctcta     1860

gaaataattt tgtttaactt taagaaggag atatacatat ggttcccatt agccctattg     1920

agactgtacc agtaaaatta aagccaggaa tggatggccc aaaagttaaa caatggccat     1980

tgacagaaga aaaaataaaa gcattagtag aaatttgtac agaaatggaa aaggaaggga     2040

aaatttcaaa aattgggcct gagaatccat acaatactcc agtatttgcc ataaagaaaa     2100

aagacagtac taaatggaga aaattagtag atttcagaga acttaataag agaactcaag     2160

acttctggga agttcaatta ggaataccac atcccgcagg gttaaaaaag aaaaaatcag     2220

taacagtact ggatgtgggt gatgcatatt tttcagttcc cttagatgaa gacttcagga     2280

agtatactgc atttaccata cctagtataa acaatgagac accagggatt agatatcagt     2340

acaatgtgct tccacaggga tggaaaggat caccagcaat attccaaagt agcatgacaa     2400

aaatcttaga gccttttgca gcacaaaatc cagacatagt tatctatcaa tacatggatg     2460

atttgtatgt aggatctgac ttagaaatag ggcagcatag aacaaaaata gaggagctga     2520

gacaacatct gttgaggtgg ggacttacca caccagacaa aaaacatcag aaagaacctc     2580

cattcctttg gatgggttat gaactccatc ctgataaatg gacagtacag cctatagtgc     2640

tgccagaaaa agacagctgg actgtcaatg acatacagaa gttagtgggg aaattgaatt     2700

gggcaagtca gatttaccca gggattaaag taaggcaatt aagtaaactc cttagaggaa     2760

ccaaagcact aacagaagta ataccactaa cagaagaagc agagctagaa ctggcagaaa     2820

acagagagat tctaaaagaa ccagtacatg gagtgtatta tgacccatca aaagacttaa     2880

tagcagaaat acagaagcag gggcaaggcc aatggacata tcaaatttat caagagccat     2940

ttaaaaatct gaaaacagga aaatatgcaa gaatgagggg tgcccacact aatgatgtaa     3000

aacaattaac agaggcagtg caaaaaataa ccacagaaag catagtaata tggggaaaga     3060

ctcctaaatt taaactaccc atacaaaagg aaacatggga aacatggtgg acagagtatt     3120

ggcaagccac ctggattcct gagtgggagt ttgttaatac ccctccttta gtgaaattat     3180

ggtaccagtt agagaaagaa cccatagtag gagcagaaac cttctatgta gatggggcag     3240

ctaacaggga gactaaatta ggaaaagcag gatatgttac taacaaagga agacaaaagg     3300

ttgtccccct aactaacaca acaaatcaga aaactgagtt acaagcaatt tatctagctt     3360

tgcaggattc aggattagaa gtaaacatag taacagactc acaatatgca ttaggaatca     3420

ttcaagcaca accagataaa agtgaatcag agttagtcaa tcaaataata gagcagttaa     3480

taaaaaagga aaaggtctat ctggcatggg taccagcaca caaaggaatt ggaggaaatg     3540

aacaagtaga taaattagtc agtgctggat aactcgagtc tggtaaagaa accgctgctg     3600

cgaaatttga acgccagcac atggactcgt ctactagcgc agcttaatta acctaggctg     3660

ctgccaccgc tgagcaataa ctagcataac cccttggggc ctctaaacgg gtcttgaggg     3720

gttttttgct gaaacctcag gcatttgaga agcacacggt cacactgctt ccggtagtca     3780

ataaaccggt aaaccagcaa tagacataag cggctattta acgaccctgc cctgaaccga     3840

cgaccgggtc atcgtggccg gatcttgcgg cccctcggct tgaacgaatt gttagacatt     3900

atttgccgac taccttggtg atctcgcctt tcacgtagtg gacaaattct tccaactgat     3960

ctgcgcgcga ggccaagcga tcttcttctt gtccaagata agcctgtcta gcttcaagta     4020

tgacgggctg atactgggcc ggcaggcgct ccattgccca gtcggcagcg acatccttcg     4080

gcgcgatttt gccggttact gcgctgtacc aaatgcggga caacgtaagc actacatttc     4140

gctcatcgcc agcccagtcg ggcggcgagt tccatagcgt taaggtttca tttagcgcct     4200

caaatagatc ctgttcagga accggatcaa agagttcctc cgccgctgga cctaccaagg     4260

caacgctatg ttctcttgct tttgtcagca agatagccag atcaatgtcg atcgtggctg     4320

gctcgaagat acctgcaaga atgtcattgc gctgccattc tccaaattgc agttcgcgct     4380

tagctggata acgccacgga atgatgtcgt cgtgcacaac aatggtgact tctacagcgc     4440

ggagaatctc gctctctcca ggggaagccg aagtttccaa aaggtcgttg atcaaagctc     4500

gccgcgttgt ttcatcaagc cttacggtca ccgtaaccag caaatcaata tcactgtgtg     4560

gcttcaggcc gccatccact gcggagccgt acaaatgtac ggccagcaac gtcggttcga     4620

gatggcgctc gatgacgcca actacctctg atagttgagt cgatacttcg gcgatcaccg     4680

cttccctcat actcttcctt tttcaatatt attgaagcat ttatcagggt tattgtctca     4740

tgagcggata catatttgaa tgtatttaga aaaataaaca aatagctagc tcactcggtc     4800

gctacgctcc gggcgtgaga ctgcggcggg cgctgcggac acatacaaag ttacccacag     4860

attccgtgga taagcagggg actaacatgt gaggcaaaac agcagggccg cgccggtggc     4920

gtttttccat aggctccgcc ctcctgccag agttcacata aacagacgct tttccggtgc     4980

atctgtggga gccgtgaggc tcaaccatga atctgacagt acgggcgaaa cccgacagga     5040

cttaaagatc cccaccgttt ccggcgggtc gctccctctt gcgctctcct gttccgaccc     5100

tgccgtttac cggatacctg ttccgccttt ctcccttacg ggaagtgtgg cgctttctca     5160

tagctcacac actggtatct cggctcggtg taggtcgttc gctccaagct gggctgtaag     5220

caagaactcc ccgttcagcc cgactgctgc gccttatccg gtaactgttc acttgagtcc     5280

aacccggaaa agcacggtaa aacgccactg gcagcagcca ttggtaactg ggagttcgca     5340

gaggatttgt ttagctaaac acgcggttgc tcttgaagtg tgcgccaaag tccggctaca     5400

ctggaaggac agatttggtt gctgtgctct gcgaaagcca gttaccacgg ttaagcagtt     5460

ccccaactga cttaaccttc gatcaaacca cctccccagg tggttttttc gtttacaggg     5520

caaaagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt ttctactgaa     5580

ccgctctaga tttcagtgca atttatctct tcaaatgtag cacctgaagt cagccccata     5640

cgatataagt tgtaattctc atgttagtca tgccccgcgc ccaccggaag gagctgactg     5700

ggttgaaggc tctcaagggc atcggtcgag atcccggtgc ctaatgagtg agctaactta     5760

cattaattgc gttgcgctca ctgcccgctt tccagtcggg aaacctgtcg tgccagctgc     5820

attaatgaat cggccaacgc gcggggagag gcggtttgcg tattgggcgc cagggtggtt     5880

tttcttttca ccagtgagac gggcaacagc tgattgccct tcaccgcctg gccctgagag     5940

agttgcagca agcggtccac gctggtttgc cccagcaggc gaaaatcctg tttgatggtg     6000

gttaacggcg ggatataaca tgagctgtct tcggtatcgt cgtatcccac taccgagatg     6060

tccgcaccaa cgcgcagccc ggactcggta atggcgcgca ttgcgcccag cgccatctga     6120

tcgttggcaa ccagcatcgc agtgggaacg atgccctcat tcagcatttg catggtttgt     6180

tgaaaaccgg acatggcact ccagtcgcct tcccgttccg ctatcggctg aatttgattg     6240

cgagtgagat atttatgcca gccagccaga cgcagacgcg ccgagacaga acttaatggt     6300

cccgctaaca gcgcgatttg ctggtgaccc aatgcgacca gatgctccac gcccagtcgc     6360

gtaccgtctt catgggagaa aataatactg ttgatgggtg tctggtcaga gacatcaaga     6420

aataacgccg gaacattagt gcaggcagct tccacagcaa tggcatcctg gtcatccagc     6480

ggatagttaa tgatcagccc actgacgcgt tgcgcgagaa gattgtgcac cgccgcttta     6540

caggcttcga cgccgcttcg ttctaccatc gacaccacca cgctggcacc cagttgatcg     6600

gcgcgagatt taatcgccgc gacaatttgc gacggcgcgt gcagggccag actggaggtg     6660

gc                                                                    6662


<210>  4
<211>  15
<212>  PRT
<213>  HIV

<400>  4

Met Ala His His His His His His Ala Leu Glu Val Leu Phe Gln 
1               5                   10                  15  


<210>  5
<211>  35
<212>  DNA
<213>  HIV

<400>  5
gcggatccgg accaaacaca gaatttgcac tatcc                                  35


<210>  6
<211>  77
<212>  DNA
<213>  HIV

<400>  6
cgccatggca catcaccacc accatcacgc tcttgaagtc ctctttcagg gacccattag       60

ccctattgag actgtac                                                      77


<210>  7
<211>  48
<212>  DNA
<213>  HIV

<400>  7
cggctcgagt tagtttctct acaaaatatt gttttttaag ttgagctg                    48


<210>  8
<211>  68
<212>  DNA
<213>  HIV

<400>  8
gaaaagcagg atatgttact aacaaaggag catcactgtc tagcccccta actaacacaa       60

caaatcag                                                                68


<210>  9
<211>  31
<212>  DNA
<213>  HIV

<400>  9
gctcctttgt tagtaacata tcctgctttt c                                      31


<210>  10
<211>  51
<212>  DNA
<213>  HIV

<400>  10
gacagctgga ctgtcaatga catacagaag ttagtgggga aattgaattg g                51


<210>  11
<211>  27
<212>  DNA
<213>  HIV

<400>  11
ctgtatgtca ttgacagtcc agctgtc                                           27


<210>  12
<211>  37
<212>  DNA
<213>  HIV

<400>  12
ggatccttac gccccgccca gctctctaga gagctcg                                37


<210>  13
<211>  40
<212>  DNA
<213>  HIV

<400>  13
ccagctctct agagagctcg gtgatggtga tggtgatggc                             40


<210>  14
<211>  43
<212>  DNA
<213>  HIV

<400>  14
ccagctctct agagagctcg ttagtgatgg tgatggtgat ggc                         43


<210>  15
<211>  43
<212>  DNA
<213>  HIV

<400>  15
ccagctctct agagagctcg ttagtgatgg tgatggtgat ggc                         43


<210>  16
<211>  39
<212>  DNA
<213>  HIV

<400>  16
cgggagctct tactggtacc ataatttcac taaaggagg                              39


<210>  17
<211>  35
<212>  DNA
<213>  HIV

<400>  17
gtggagctct tagaaggttt ctgctcctac tatgg                                  35


<210>  18
<211>  37
<212>  DNA
<213>  HIV

<400>  18
gtggagctct tagttagctg ccccatctac atagaag                                37


<210>  19
<211>  50
<212>  DNA
<213>  HIV

<400>  19
ctcaagactt ctgggaagtt caaataccac atcccgcagg gttaaaaaag                  50


<210>  20
<211>  27
<212>  DNA
<213>  HIV

<400>  20
gtatttgaac ttcccagaag tcttgag                                           27


<210>  21
<211>  49
<212>  DNA
<213>  HIV

<400>  21
gagctgagac aacatctgtt gaggggactt accacaccag acaaaaaac                   49


<210>  22
<211>  26
<212>  DNA
<213>  HIV

<400>  22
cccctcaaca gatgttgtct cagctc                                            26


<210>  23
<211>  63
<212>  DNA
<213>  HIV

<400>  23
caaaagttaa acaatggcca ttgacagcag aaaaaataaa agcattagta gaaatttgta       60

cag                                                                     63


<210>  24
<211>  30
<212>  DNA
<213>  HIV

<400>  24
ctgctgtcaa tggccattgt ttaacttttg                                        30


<210>  25
<211>  60
<212>  DNA
<213>  HIV

<400>  25
cactaacaga agtaatacca ctaacagcag cagcagcgct agaactggca gaaaacagag       60


<210>  26
<211>  31
<212>  DNA
<213>  HIV

<400>  26
ctgctgttag tggtattact tctgttagtg c                                      31


<210>  27
<211>  57
<212>  DNA
<213>  HIV

<400>  27
gtagatgggg cagctaacag ggcgactaaa ttaggaaaag caggatatgt tactaac          57


<210>  28
<211>  24
<212>  DNA
<213>  HIV

<400>  28
cgccctgtta gctgccccat ctac                                              24


<210>  29
<211>  17
<212>  DNA
<213>  HIV

<400>  29
agccataccg cgaaagg                                                      17


<210>  30
<211>  34
<212>  DNA
<213>  HIV

<400>  30
cgggctttct ccttcctctc ccttatgcga ctcc                                   34


<210>  31
<211>  34
<212>  DNA
<213>  HIV

<400>  31
cgctcctctt cgggcccgcc agcacatgga ctcg                                   34


<210>  32
<211>  37
<212>  DNA
<213>  HIV

<400>  32
cagctggact gtcaatgaca tttgtaagtt agtgggg                                37


<210>  33
<211>  21
<212>  DNA
<213>  HIV

<400>  33
atgtcattga cagtccagct g                                                 21


<210>  34
<211>  57
<212>  DNA
<213>  HIV

<400>  34
gaataccaca tcccgcaggg ttaaaaaaga ataaatcagt aacagtactg gatgtgg          57


<210>  35
<211>  59
<212>  DNA
<213>  HIV

<400>  35
caaaaatctt agagcctttt gcagcacaaa atccagacat agttatctat caatacatg        59


<210>  36
<211>  39
<212>  DNA
<213>  HIV

<400>  36
gattttgtgc tgcaaaaggc tctaagattt ttgtcatgc                              39


<210>  37
<211>  61
<212>  DNA
<213>  HIV

<400>  37
catgacaaaa atcttagagc cttttcgtaa acaaaatcca gacatagtta tctatcaata       60

c                                                                       61


<210>  38
<211>  28
<212>  DNA
<213>  HIV

<400>  38
acgaaaaggc tctaagattt ttgtcatg                                          28


<210>  39
<211>  58
<212>  DNA
<213>  HIV

<400>  39
cttagaaata gggcagcata gaacagcaat agcggcgctg agacaacatc tgttgagg         58


<210>  40
<211>  30
<212>  DNA
<213>  HIV

<400>  40
attgctgttc tatgctgccc tatttctaag                                        30


<210>  41
<211>  48
<212>  DNA
<213>  HIV

<400>  41
ggggacttac cacaccagac gcagcacatc agaaagaacc tccattcc                    48


<210>  42
<211>  23
<212>  DNA
<213>  HIV

<400>  42
tgcgtctggt gtggtaagtc ccc                                               23


<210>  43
<211>  48
<212>  DNA
<213>  HIV

<400>  43
gtacagccta tagtgctgcc agcagcagac agctggactg tcaatgac                    48


<210>  44
<211>  25
<212>  DNA
<213>  HIV

<400>  44
ctgctggcag cactataggc tgtac                                             25


<210>  45
<211>  58
<212>  DNA
<213>  HIV

<400>  45
gaaagactcc taaatttaaa ctacccatac aagcggcaac atgggaaaca tggtggac         58


<210>  46
<211>  35
<212>  DNA
<213>  HIV

<400>  46
cgcttgtatg ggtagtttaa atttaggagt ctttc                                  35


<210>  47
<211>  80
<212>  DNA
<213>  HIV

<400>  47
aaaagcagga tatgttacta acagaggaag acaaaaggtt gtcaccctaa ctgacacaac       60

aaatcagaaa actgagttac                                                   80


<210>  48
<211>  28
<212>  DNA
<213>  HIV

<400>  48
cctctgttag taacatatcc tgcttttc                                          28


<210>  49
<211>  60
<212>  DNA
<213>  HIV

<400>  49
ggaatcattc aagcacaacc agatcaaagt gaatcagagt tagtcaatca aataatagag       60


<210>  50
<211>  28
<212>  DNA
<213>  HIV

<400>  50
tttgatctgg ttgtgcttga atgattcc                                          28


<210>  51
<211>  59
<212>  DNA
<213>  HIV

<400>  51
gtcaatcaaa taatagagca gttaatagca aaggcagcgg tctatctggc atgggtacc        59


<210>  52
<211>  39
<212>  DNA
<213>  HIV

<400>  52
gcctttgcta ttaactgctc tattatttga ttgactaac                              39


<210>  53
<211>  26
<212>  DNA
<213>  HIV

<400>  53
acgccaccat ggctcaccat catcac                                            26


<210>  54
<211>  57
<212>  DNA
<213>  HIV

<400>  54
gaataccaca tcccgcaggg ataaaaaaga ataaatcagt aacagtactg gatgtgg          57


<210>  55
<211>  44
<212>  DNA
<213>  HIV

<400>  55
cttcttcgcc cccgttttca cgatgggcaa atattatacg caag                        44


<210>  56
<211>  20
<212>  DNA
<213>  HIV

<400>  56
tgaaaacggg ggcgaagaag                                                   20


<210>  57
<211>  38
<212>  DNA
<213>  HIV

<400>  57
tagaaataat tttgtttaac tttaagaagg agatatac                               38


<210>  58
<211>  20
<212>  DNA
<213>  HIV

<400>  58
cgagctctct agagagctgg                                                   20


<210>  59
<211>  20
<212>  DNA
<213>  HIV

<400>  59
cgcgggatcg agatcaacgc                                                   20


<210>  60
<211>  32
<212>  DNA
<213>  HIV

<400>  60
gtttaacttt aagaaggaga tataccatgg tt                                     32


<210>  61
<211>  32
<212>  DNA
<213>  HIV

<400>  61
aaccatggta tatctccttc ttaaagttaa ac                                     32


<210>  62
<211>  32
<212>  DNA
<213>  HIV

<400>  62
aaccatggta tatctccttc ttaaagttaa ac                                     32


<210>  63
<211>  44
<212>  DNA
<213>  HIV

<400>  63
gaaactttac cagactcgag ttaaagtatt ttcctgattc cagc                        44


<210>  64
<211>  41
<212>  DNA
<213>  HIV

<400>  64
gaaactttac cagactcgag ttagtgatgg tggtggtgat g                           41


<210>  65
<211>  30
<212>  DNA
<213>  HIV

<400>  65
catatgtata tctccttctt aaagttaaac                                        30


<210>  66
<211>  55
<212>  DNA
<213>  HIV

<400>  66
agaaggagat atacatatgc atatggttat tgagactgta ccagtaaaat taaag            55


<210>  67
<211>  58
<212>  DNA
<213>  HIV

<400>  67
agaaggagat atacatatgc atatggttcc tattgagact gtaccagtaa aattaaag         58


<210>  68
<211>  48
<212>  DNA
<213>  HIV

<400>  68
agaaggagat atacatatgc atatggttcc cattagccct attgagac                    48


<210>  69
<211>  32
<212>  DNA
<213>  HIV

<400>  69
cacgcgggcg gccgttggat ccccccgggt cc                                     32


<210>  70
<211>  32
<212>  DNA
<213>  HIV

<400>  70
cacgcgggcg gccgtggatc cttacgcccc gc                                     32


<210>  71
<211>  33
<212>  DNA
<213>  HIV

<400>  71
cggccgcccg cgtgtgttga tctcgatccc gcg                                    33


<210>  72
<211>  42
<212>  DNA
<213>  HIV

<400>  72
gaggagaagc ccggtctcga gttagtgatg gtggtggtga tg                          42


<210>  73
<211>  29
<212>  DNA
<213>  HIV

<400>  73
gcgagctctt agtgatggtg gtggtgatg                                         29


<210>  74
<211>  39
<212>  DNA
<213>  HIV

<400>  74
cggctcgagt tatccagcac tgactaattt atctacttg                              39


<210>  75
<211>  47
<212>  DNA
<213>  HIV

<400>  75
gaggagaagc ccggtctcga gttatagtat tttcctgatt ccagcac                     47


<210>  76
<211>  37
<212>  DNA
<213>  HIV

<400>  76
ctccatggtt attgagactg taccagtaaa attaaag                                37


<210>  77
<211>  54
<212>  DNA
<213>  HIV

<400>  77
ctttaagaag gagatatacc atggttattg agactggtac cagtaaaatt aaag             54


<210>  78
<211>  40
<212>  DNA
<213>  HIV

<400>  78
ctccatggtt cctattgaga ctgtaccagt aaaattaaag                             40


<210>  79
<211>  46
<212>  DNA
<213>  HIV

<400>  79
ctttaagaag gagatatacc atggttccta ttgagactgg taccag                      46


<210>  80
<211>  46
<212>  DNA
<213>  HIV

<400>  80
ctttaagaag gagatatacc atggttccca ttagccctat tgagac                      46


<210>  81
<211>  30
<212>  DNA
<213>  HIV

<400>  81
ctccatggtt cccattagcc ctattgagac                                        30


<210>  82
<211>  39
<212>  DNA
<213>  HIV

<400>  82
cagagctcgt tacagtattt tcctgattcc agcactgac                              39


<210>  83
<211>  22
<212>  DNA
<213>  HIV

<400>  83
tagggctaat gggaaccata tg                                                22


<210>  84
<211>  48
<212>  DNA
<213>  HIV

<400>  84
gtttctttac cagactcgag ttatagtatt ttcctgattc cagcactg                    48


<210>  85
<211>  45
<212>  DNA
<213>  HIV

<400>  85
cagtgctgga atcaggaaaa tactacgagc tctctagaga gctgg                       45


<210>  86
<211>  45
<212>  DNA
<213>  HIV

<400>  86
ccagctctct agagagctcg tagtattttc ctgattccag cactg                       45


<210>  87
<211>  48
<212>  DNA
<213>  HIV

<400>  87
ccagctctct agagagctcg ttatagtatt ttcctgattc cagcactg                    48


<210>  88
<211>  30
<212>  DNA
<213>  HIV

<400>  88
gcccccggga gccagctctc tagagagctc                                        30


<210>  89
<211>  26
<212>  DNA
<213>  HIV

<400>  89
gccggatcct tacgccccgc cctgcc                                            26


<210>  90
<211>  39
<212>  DNA
<213>  HIV

<400>  90
ggcccgaaga ggagcgccgg tttctttacc agactcgag                              39


<210>  91
<211>  31
<212>  DNA
<213>  HIV

<400>  91
gaggagaaag ccctgcgtcg agatcccgga c                                      31


<210>  92
<211>  33
<212>  DNA
<213>  HIV

<400>  92
gaggagaaag cccgggtatg gcatgatagc gcc                                    33


<210>  93
<211>  25
<212>  DNA
<213>  HIV

<400>  93
ccggagctct ctagagagct ggctc                                             25


<210>  94
<211>  20
<212>  DNA
<213>  HIV

<400>  94
ctcaggtaca cgaccgcaag                                                   20


<210>  95
<211>  20
<212>  DNA
<213>  HIV

<400>  95
gagtccatgt gctggcgttc                                                   20


<210>  96
<211>  24
<212>  DNA
<213>  HIV

<400>  96
tcctttgtta gtaacatatc ctgc                                              24


<210>  97
<211>  39
<212>  DNA
<213>  HIV

<400>  97
cgggatccag caaaaaaccc ctcaagaccc gtttagagg                              39


<210>  98
<211>  65
<212>  DNA
<213>  HIV

<400>  98
ccttttaaaa aacaaaatcc agacatagtt atctgtcaat acatggatga tttgtatgta       60

ggatc                                                                   65


<210>  99
<211>  34
<212>  DNA
<213>  HIV

<400>  99
agataactat gtctggattt tgttttttaa aagg                                   34


<210>  100
<211>  61
<212>  DNA
<213>  HIV

<400>  100
gacatagtta tctatcaata catggatgat ttgcttgtag gatctgactt agaaataggg       60

c                                                                       61


<210>  101
<211>  33
<212>  DNA
<213>  HIV

<400>  101
caaatcatcc atgtattgat agataactat gtc                                    33


<210>  102
<211>  38
<212>  DNA
<213>  HIV

<400>  102
gacgacgaca agatccatgg actactgagt gagagctc                               38


<210>  103
<211>  35
<212>  DNA
<213>  HIV

<400>  103
cgcgggcggc cgggatcccc ccgggtcctc ctttc                                  35


<210>  104
<211>  38
<212>  DNA
<213>  HIV

<400>  104
gaggagaagc ccggtggatc cccccgggtc ctcctttc                               38


<210>  105
<211>  17
<212>  DNA
<213>  HIV

<400>  105
ttgatctcga tcccgcg                                                      17


<210>  106
<211>  21
<212>  DNA
<213>  HIV

<400>  106
gctagttatt gctcagcggt g                                                 21


<210>  107
<211>  20
<212>  DNA
<213>  HIV

<400>  107
gctctccctt atgcgactcc                                                   20


<210>  108
<211>  19
<212>  DNA
<213>  HIV

<400>  108
cgggatcgag atcaacgcg                                                    19


<210>  109
<211>  65
<212>  DNA
<213>  HIV

<400>  109
ccttttgcag cacaaaatcc agacatagtt atctgtcaat acatggatga tttgtatgta       60

ggatc                                                                   65


<210>  110
<211>  34
<212>  DNA
<213>  HIV

<400>  110
agataactat gtctggattt tgtgctgcaa aagg                                   34


<210>  111
<211>  54
<212>  DNA
<213>  HIV

<400>  111
cggctcgagt tatagtattt tcctgattcc agcactgact aatttatcta cttg             54


<210>  112
<211>  59
<212>  DNA
<213>  HIV

<400>  112
cgccatggca catcaccacc accatcacgc tcttcccatt agccctattg agactgtac        59


<210>  113
<211>  79
<212>  DNA
<213>  HIV

<400>  113
cgccatggca catcaccacc accatcacgc tcttgaagtc ctctttcagg gaattgagac       60

tgtaccagta aaattaaag                                                    79


<210>  114
<211>  42
<212>  DNA
<213>  HIV

<400>  114
cggctcgagt tagactaatt tatctacttg ttcatttcct cc                          42


<210>  115
<211>  40
<212>  DNA
<213>  HIV

<400>  115
cttttagaat ctctgcgttt tctgccagtt ctagctctgc                             40


<210>  116
<211>  40
<212>  DNA
<213>  HIV

<400>  116
gcagaaaacg cagagattct aaaagaacca gtacatggag                             40


<210>  117
<211>  37
<212>  DNA
<213>  HIV

<400>  117
cagctgtctt ttgctggcag cactataggc tgtactg                                37


<210>  118
<211>  37
<212>  DNA
<213>  HIV

<400>  118
ctgccagcaa aagacagctg gactgtcaat gacatac                                37


<210>  119
<211>  49
<212>  DNA
<213>  HIV

<400>  119
ccctggtgtc gcattggctg cactaggtat ggtaaatgca gtatacttc                   49


<210>  120
<211>  47
<212>  DNA
<213>  HIV

<400>  120
gcagccaatg cgacaccagg gattagatat cagtacaatg tgcttcc                     47


<210>  121
<211>  6
<212>  PRT
<213>  HIV

<400>  121

Met Val Pro Ile Ser Pro 
1               5       


<210>  122
<211>  38
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (15)..(15)
<223>  gm

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is a, c, g, or t

<400>  122
gcccgaagag gagcnccggt ttctttacca gactcgag                               38


<210>  123
<211>  32
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (14)..(14)
<223>  cm

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  123
ctcctcttcg ggcncgccag cacatggact cg                                     32


<210>  124
<211>  31
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (12)..(12)
<223>  gm

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is a, c, g, or t

<400>  124
ggagaaagcc cnggtatggc atgatagcgc c                                      31


<210>  125
<211>  31
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (14)..(14)
<223>  um

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  125
acgcgggcgg ccgnggatcc ttacgccccg c                                      31


<210>  126
<211>  33
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (14)..(14)
<223>  cm

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  126
cgggctttct cctnctctcc cttatgcgac tcc                                    33


<210>  127
<211>  32
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (15)..(15)
<223>  gm

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is a, c, g, or t

<400>  127
cggccgcccg cgtgnttgat ctcgatcccg cg                                     32


<210>  128
<211>  31
<212>  DNA
<213>  HIV


<220>
<221>  modified_base
<222>  (15)..(15)
<223>  tm

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is a, c, g, or t

<400>  128
cacgcgggcg gccgnggatc cccccgggtc c                                      31


