                               SEQUENCE LISTING

<110> SORGE, JOSEPH A.
      FIRMIN, ANDREW
      HAPPE, SCOTT
 
<120> COMPOSITIONS AND METHODS FOR THE DETECTION OF A NUCLEIC ACID 
      USING A CLEAVAGE REACTION

<130> STG-174-05

<140> 11/699,736
<141> 2007-01-29

<150> 11/607,341
<151> 2006-11-30

<150> 11/106,237
<151> 2005-04-14

<150> 09/728,574
<151> 2000-11-30

<150> 09/650,888
<151> 2000-08-30

<150> 09/430,692
<151> 1999-10-29

<160> 70    

<170> PatentIn version 3.3

<210> 1
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 1
aaaataaata aaaaaaatac tgttgggaag ggcgatcggt gcg                       43


<210> 2
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 2
aaaataaata aaaaaaat                                                   18


<210> 3
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 3
ccattcgcca ttcaggctgc gca                                             23


<210> 4
<211> 21
<212> DNA
<213> Unknown Organism

<220>
<223> Description of Unknown Organism: Unknown
      bacteria sequence

<400> 4
aattgtgagc ggataacaat t                                               21


<210> 5
<211> 21
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown
      bacteria sequence 

<400> 5
ttaacactcg cctattgtta a                                               21


<210> 6
<211> 16
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown
      bacteria sequence 

<400> 6
tgtgagttag ctcact                                                     16


<210> 7
<211> 16
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Artificial Organism: Unknown
      bacteria sequence 

<400> 7
acactcaatc gagtga                                                     16


<210> 8
<211> 17
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Artificial Organism: Unknown
      bacteria sequence 

<400> 8
tatcaccgcc agaggta                                                    17


<210> 9
<211> 17
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Artificial Organism: Unknown
      bacteria sequence 

<400> 9
atagtggcgg tctccat                                                    17


<210> 10
<211> 17
<212> DNA
<213> Saccharomyces cerevisiae

<400> 10
cggaggactg tcctccg                                                    17


<210> 11
<211> 17
<212> DNA
<213> Saccharomyces cerevisiae

<400> 11
gcctcctgac aggaggc                                                    17


<210> 12
<211> 9
<212> DNA
<213> Saccharomyces cerevisiae

<400> 12
catgtaatt                                                              9


<210> 13
<211> 9
<212> DNA
<213> Saccharomyces cerevisiae

<400> 13
gtacattaa                                                              9


<210> 14
<211> 9
<212> DNA
<213> Saccharomyces cerevisiae

<400> 14
atgactcat                                                              9


<210> 15
<211> 9
<212> DNA
<213> Saccharomyces cerevisiae

<400> 15
tactgagta                                                              9


<210> 16
<211> 10
<212> DNA
<213> Drosophila sp.

<400> 16
aacgggttaa                                                            10


<210> 17
<211> 10
<212> DNA
<213> Drosophila sp.

<400> 17
ttgcccaatt                                                            10


<210> 18
<211> 9
<212> DNA
<213> Drosophila sp.

<400> 18
gggattaga                                                              9


<210> 19
<211> 9
<212> DNA
<213> Drosophila sp.

<400> 19
ccctaatct                                                              9


<210> 20
<211> 6
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence 

<400> 20
gggcgg                                                                 6


<210> 21
<211> 6
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence 

<400> 21
cccgcc                                                                 6


<210> 22
<211> 8
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence 

<400> 22
atgcaaat                                                               8


<210> 23
<211> 8
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence 

<400> 23
tacgttta                                                               8


<210> 24
<211> 6
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence 

<400> 24
tgatag                                                                 6


<210> 25
<211> 6
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown 
      mammalian sequence

<400> 25
actatc                                                                 6


<210> 26
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<400> 26
agctactgat gcagtcacgt                                                 20


<210> 27
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 27
tcgatgacta cgtcagtgca                                                 20


<210> 28
<211> 21
<212> DNA
<213> Unknown Organism 

<220>
<223> Description of Unknown Organism: Unknown
      bacteria sequence 
      
<400> 28
aattgttatc cgctcacaat t                                               21


<210> 29
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 29
gacgacgaca agatgggtgt cccaattggt gagattatac caagaaaag                 49


<210> 30
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 30
ggaacaagac ccgtttatct cttgaaccaa ctttcaaggg ttgattgttt tccact         56


<210> 31
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe

<400> 31
tcgcagtgtc gacctgcga                                                  19


<210> 32
<211> 44
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<220>
<221> modified_base
<222> (29)..(32)
<223> a, c, t, g, unknown or other

<400> 32
cagccgtcga tccgcaggtc gacactgcnn nncgtcgacg gctg                      44



<210> 33
<211> 12
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<400> 33
cagccgtcga cg                                                         12


<210> 34
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<220>
<221> modified_base
<222> (19)..(22)
<223> a, c, t, g, unknown or other

<400> 34
tccgcaggtc gacactgcnn nncgtcgacg gctg                                 34


<210> 35
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer

<400> 35
cgatcgagca agcca                                                      15


<210> 36
<211> 14
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 36
cgagccgctc gctg                                                       14


<210> 37
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 37
accgcatcga atgcatgtct cgggtaaggc gtactcgacc                           40


<210> 38
<211> 80
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 38
cgattccgct ccagacttct cgggtgtact gagatcccct accgcatcga atgcatgtct     60

cgggtaaggc gtactcgacc                                                 80


<210> 39
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 39
aaggcgtact cgacctgaaa                                                 20


<210> 40
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe

<400> 40
accatacgga taggggatct c                                               21


<210> 41
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe

<400> 41
gcaaagtatc atccctccag                                                 20


<210> 42
<211> 120
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 42
cctctgcaga ctactattac ataatacgac tcactatagg gatctgcacg tattagccta     60

tagtgagtcg tattaatagg aaacaccaaa gatgatattt cgtcacagca agaattcagg    120


<210> 43
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 43
cctctgcaga ctactattac                                                 20


<210> 44
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 44
cctgaattct tgctgtgacg                                                 20


<210> 45
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe

<400> 45
taggaaacac caaagatgat attt                                            24


<210> 46
<211> 95
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe

<400> 46
gaggagaata aaagtttctc ataagactcg tcatgtctca gcagcttcta acggtcacta     60

atacgactca ctataggttc tgcctctggg aacac                                95


<210> 47
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer

<400> 47
gctgagacat gacgagtc                                                   18


<210> 48
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 48
aagtttctca taagactcgt cat                                             23


<210> 49
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer 

<400> 49
aggcagaacc tatagtgagt cgt                                             23


<210> 50
<211> 53
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 50
cccaaccgac agaagcccgt ggtaggccat tctgtgcgga tcaattctgt cgg            53


<210> 51
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<400> 51
gccaagcgag agatgcgcgt cgtagttttt tctaccacgg gcttctgtcg gttggg         56


<210> 52
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 52
ccgacagaat tgatccgcac agaatgg                                         27


<210> 53
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 53
ccgacagaat tgatccgcac agaatggc                                        28


<210> 54
<211> 29
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 54
ccgacagaat tgatccgcac agaatggcc                                       29


<210> 55
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<400> 55
accggtgaca tttacctgct caacctggcc                                      30


<210> 56
<211> 54
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 56
tgcagggcca ggttgagcag gtaaatgtca ggataccact tcagcttttt gcag           54


<210> 57
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 57
ctgcaaaaag ctgaagtggt atcctgac                                        28


<210> 58
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 58
ctgcaaaaag ctgaagtggt atcctga                                         27


<210> 59
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 59
ctgcaaaaag ctgaagtggt atcctg                                          26


<210> 60
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 60
ctgcaaaaag ctgaagtggt atcct                                           25


<210> 61
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 61
ctgcaaaaag ctgaagtggt atcc                                            24


<210> 62
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 62
ctgcaaaaag ctgaagtggt atc                                             23


<210> 63
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 63
ctgcaaaaag ctgaagtggt ata                                             23


<210> 64
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 64
ctgcaaaaag ctgaagtggt at                                              22


<210> 65
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer

<400> 65
cccaaccgac agaagcccgt ggtagac                                         27


<210> 66
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      probe 

<400> 66
ttttaccacg ggcttctgtc ggttggg                                         27


<210> 67
<211> 55
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 67
cccaaccgac agaagcccgt ggtagaccat tctgtgcgga tcaattctgt cggca          55


<210> 68
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 68
ccgacagaat tgatccgcac agaatggt                                        28


<210> 69
<211> 29
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      oligonucleotide

<400> 69
ccgacagaat tgatccgcac agaatggtc                                       29


<210> 70
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic 
      primer

<400> 70
gcagaggctg ggaggaggaa                                                 20


