                         SEQUENCE LISTING

<110>  REGENTS OF THE UNIVERSITY OF COLORADO
       Rowlen, Kathy L.
       Dankbar, Daniela M.
       Kuchta, Robert
       Mehlmann, Martin
       Smagala, James
       Moore, Chad L.
       Dawson, Erica
       Cox, Nancy
       Shaw, Michael W.
 
<120>  MICROARRAY-BASED LINEAGE ANALYSIS AS A DIAGNOSTIC FOR CURRENT AND
        EMERGING STRAINS OF INFLUENZA B

<130>  66888-361323

<160>  113   

<170>  PatentIn version 3.4

<210>  1
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  HA gene forward primer

<400>  1
atccacaaaa tgaaggca                                                   18


<210>  2
<211>  24
<212>  DNA
<213>  Artificial

<220>
<223>  NA gene forward primer

<400>  2
agcagaagca gagcatcttc tcaa                                            24


<210>  3
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  HA/NA gene reverse primer

<400>  3
actagtaaca agagcatttt tc                                              22


<210>  4
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  M gene forward primer

<400>  4
agcagaagca cgcactttc                                                  19


<210>  5
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  M gene reverse primer

<400>  5
aaacaacgca ctttttcc                                                   18


<210>  6
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-1 capture sequence

<400>  6
accagacctg cttagacagg atagc                                           25


<210>  7
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-1 label sequence

<400>  7
gctggcacct ttaatgcagg agaat                                           25


<210>  8
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-2 capture sequence

<400>  8
aacgaaatac tcgagctgga tgaga                                           25


<210>  9
<211>  24
<212>  DNA
<213>  Artificial

<220>
<223>  HA-2 label sequence

<400>  9
agtggatgat ctcagagctg acac                                            24


<210>  10
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-3 capture sequence

<400>  10
gttcacctca tctgct                                                     16


<210>  11
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-3 label sequence

<400>  11
atggagtaac cacaca                                                     16


<210>  12
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-4 capture sequence

<400>  12
tgatgatgga ttggataacc atact                                           25


<210>  13
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-4 label sequence

<400>  13
tactgctcta ctactcaact gctgc                                           25


<210>  14
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-5 capture sequence

<400>  14
cccaaatgaa aaacct                                                     16


<210>  15
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-5 label sequence

<400>  15
tatggagact caaatc                                                     16


<210>  16
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-6 capture sequence

<400>  16
aggaacaatt acctatcaaa gaggt                                           25


<210>  17
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-6 label sequence

<400>  17
ttttattgcc tcaaaaagtg tggtg                                           25


<210>  18
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-7 capture sequence

<400>  18
tcccaaaaaa cgacaa                                                     16


<210>  19
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-7 label sequence

<400>  19
aacaaaacag caacaa                                                     16


<210>  20
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  HA-8 capture sequence

<400>  20
ggtggattaa acaaaagcaa gcc                                             23


<210>  21
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  HA-8 label sequence

<400>  21
tactacacag gggaacatgc aaa                                             23


<210>  22
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  HA-9 capture sequence

<400>  22
tcttctcaga ggatacga                                                   18


<210>  23
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  HA-9 label sequence

<400>  23
cgtatcaggt tatcaaa                                                    17


<210>  24
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-10 capture sequence

<400>  24
gcaaaagttt caatac                                                     16


<210>  25
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-10 label sequence

<400>  25
ccatgaagta agacct                                                     16


<210>  26
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  HA-11 capture sequence

<400>  26
gccataggaa attgccc                                                    17


<210>  27
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  HA-11 label sequence

<400>  27
atatgggtga aaacacc                                                    17


<210>  28
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  HA-12 capture sequence

<400>  28
taattggtga agcagat                                                    17


<210>  29
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  HA-12 label sequence

<400>  29
gccttcatga aaaata                                                     16


<210>  30
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-13 capture sequence

<400>  30
taaagaaaat gctgggtccc tctgc                                           25


<210>  31
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  HA-13 label sequence

<400>  31
gtagacatag ggaatggatg cttcg                                           25


<210>  32
<211>  91
<212>  DNA
<213>  Influenza B virus

<400>  32
cgaaaccaaa cacaagtgca accagacctg cttagacagg atagctgctg gcacctttaa     60

tgcaggagaa ttttctcttc ccacttttga t                                    91


<210>  33
<211>  79
<212>  DNA
<213>  Influenza B virus

<400>  33
gtgccatgga tgaactccat aacgaaatac tcgagctgga tgagaaagtg gatgatctca     60

gagctgacac aataagctc                                                  79


<210>  34
<211>  72
<212>  DNA
<213>  Influenza B virus

<400>  34
ggagactcaa atcctcaaaa gttcacctca tctgctaatg gagtaaccac acattatgtt     60

tctcagattg gc                                                         72


<210>  35
<211>  91
<212>  DNA
<213>  Influenza B virus

<400>  35
attactgctg catctttaaa tgatgatgga ttggataacc atactatact gctctactac     60

tcaactgctg cttctagttt ggctgtaaca t                                    91


<210>  36
<211>  69
<212>  DNA
<213>  Influenza B virus

<400>  36
gttccattct gataacaaaa cccaaatgaa aaacctctat ggagactcaa atcctcaaaa     60

gttcacctc                                                             69


<210>  37
<211>  91
<212>  DNA
<213>  Influenza B virus

<400>  37
gtgcaaaaat ctgggaaaac aggaacaatt acctatcaaa gaggtatttt attgcctcaa     60

aaagtgtggt gcgcaagtgg caggagcaag g                                    91


<210>  38
<211>  73
<212>  DNA
<213>  Influenza B virus

<400>  38
cgcaacaatg gcttgggccg tcccaaaaaa cgacaacaac aaaacagcaa caaattcatt     60

aacaatagaa gta                                                        73


<210>  39
<211>  87
<212>  DNA
<213>  Influenza B virus

<400>  39
attgcctcca cgaaaaatac ggtggattaa acaaaagcaa gccttactac acaggggaac     60

atgcaaaggc cataggaaat tgcccaa                                         87


<210>  40
<211>  76
<212>  DNA
<213>  Influenza B virus

<400>  40
aaaattagac agctgcccaa tcttctcaga ggatacgaac gtatcaggtt atcaaaccat     60

aacgttatca atgcag                                                     76


<210>  41
<211>  68
<212>  DNA
<213>  Influenza B virus

<400>  41
gggaacatac cttcggcaaa agtttcaata ctccatgaag taagacctgt tacatctggg     60

tgctttcc                                                              68


<210>  42
<211>  67
<212>  DNA
<213>  Influenza B virus

<400>  42
gaacatgcaa aagccatagg aaattgccca atatgggtga aaacaccttt gaagcttgcc     60

aatggaa                                                               67


<210>  43
<211>  74
<212>  DNA
<213>  Influenza B virus

<400>  43
aataaaaggg tccttgcctt taattggtga agcagattgc cttcatgaaa aatacggtgg     60

attaaacaaa agca                                                       74


<210>  44
<211>  91
<212>  DNA
<213>  Influenza B virus

<400>  44
attggcactt gagagaaaac taaagaaaat gctgggtccc tctgctgtag acatagggaa     60

tggatgcttc gaaaccaaac acaagtgcaa c                                    91


<210>  45
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-1 capture sequence

<400>  45
aatatggaga agcata                                                     16


<210>  46
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-1 label sequence

<400>  46
actgacacat accatt                                                     16


<210>  47
<211>  24
<212>  DNA
<213>  Artificial

<220>
<223>  NA-2 capture sequence

<400>  47
gattgatgtg cacagagact tatt                                            24


<210>  48
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  NA-2 label sequence

<400>  48
ggacaccccc agaccaaatg atg                                             23


<210>  49
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-3 capture sequence

<400>  49
actgtcatac ttacta                                                     16


<210>  50
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-3 label sequence

<400>  50
attcggatat attgct                                                     16


<210>  51
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-4 capture sequence

<400>  51
gagacagaaa caagct                                                     16


<210>  52
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-4 capture sequence

<400>  52
aggcatctaa tttcag                                                     16


<210>  53
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  NA-5 capture sequence

<400>  53
gaatggacat atatcgga                                                   18


<210>  54
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  NA-5 label sequence

<400>  54
ttgatggccc tgacaat                                                    17


<210>  55
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-6 capture sequence

<400>  55
attcggatat attgct                                                     16


<210>  56
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-6 label sequence

<400>  56
aaattttcac caacag                                                     16


<210>  57
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  NA-7 capture sequence

<400>  57
cctggttggt attcttt                                                    17


<210>  58
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-7 label sequence

<400>  58
ggtttcgaaa taaaag                                                     16


<210>  59
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  NA-8 capture sequence

<400>  59
aggcaaaatc ccaactgtag                                                 20


<210>  60
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  NA-8 label sequence

<400>  60
aaactccatt ttccacatg                                                  19


<210>  61
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-9 capture sequence

<400>  61
tggaagatgg tactcc                                                     16


<210>  62
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  NA-9 label sequence

<400>  62
gaacgatgtc taaaac                                                     16


<210>  63
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  NA-10 capture sequence

<400>  63
caggctgtga accgttctgc a                                               21


<210>  64
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  NA-10 label sequence

<400>  64
caaaaggggt gacacttctt                                                 20


<210>  65
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  NA-11 capture sequence

<400>  65
acttggcact cagcagc                                                    17


<210>  66
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  NA-11 label sequence

<400>  66
acagccattt actgttt                                                    17


<210>  67
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  NA-12 capture sequence

<400>  67
tgatggctca gcttcaggg                                                  19


<210>  68
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  NA-12 label sequence

<400>  68
ttagtgaatg cagatttct                                                  19


<210>  69
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  NA-13 capture sequence

<400>  69
ataattgcac caacaacg                                                   18


<210>  70
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  NA-13 label sequence

<400>  70
cgttggactc cgcgaac                                                    17


<210>  71
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  NA-14 capture sequence

<400>  71
cataacaggg ccttgcgaat cta                                             23


<210>  72
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  NA-14 label sequence

<400>  72
tggggacaaa gggcgtggag gc                                              22


<210>  73
<211>  65
<212>  DNA
<213>  Influenza B virus

<400>  73
tgctcaaaat aaaatatgga gaagcatata ctgacacata ccattcctat gcaaacaaca     60

tccta                                                                 65


<210>  74
<211>  88
<212>  DNA
<213>  Influenza B virus

<400>  74
gactgataca gcggaaataa gattgatgtg cacagagact tatttggaca cccccagacc     60

aaatgatgga agcataacag ggccttgc                                        88


<210>  75
<211>  64
<212>  DNA
<213>  Influenza B virus

<400>  75
tcactatatg tgtcagcttc actgtcatac ttactatatt cggatatatt gctaaaattt     60

tcac                                                                  64


<210>  76
<211>  73
<212>  DNA
<213>  Influenza B virus

<400>  76
atactacaat ggaacaagag gagacagaaa caagctgagg catctaattt cagtcaaatt     60

gggcaaaatc cca                                                        73


<210>  77
<211>  76
<212>  DNA
<213>  Influenza B virus

<400>  77
ccgcatgcca tgatggtaag gaatggacat atatcggagt tgatggccct gacaataatg     60

cattgctcaa aataaa                                                     76


<210>  78
<211>  70
<212>  DNA
<213>  Influenza B virus

<400>  78
actgtcatac ttactatatt cggatatatt gctaaaattt tcaccaacag aaataactgc     60

accaacaatg                                                            70


<210>  79
<211>  57
<212>  DNA
<213>  Influenza B virus

<400>  79
gaacctggtt ggtattcttt cggtttcgaa ataaaagata agaaatgcga tgtcccc        57


<210>  80
<211>  66
<212>  DNA
<213>  Influenza B virus

<400>  80
caacttaggc aaaatcccaa ctgtagaaaa ctccattttc cacatggcag cttggagtgg     60

atccgc                                                                66


<210>  81
<211>  73
<212>  DNA
<213>  Influenza B virus

<400>  81
caaagaatgg catccaagat tggaagatgg tactcccgaa cgatgtctaa aactgaaaga     60

atggggatgg aac                                                        73


<210>  82
<211>  82
<212>  DNA
<213>  Influenza B virus

<400>  82
gtgcaaacgc atcaaatgtt caggctgtga accgttctgc aacaaaaggg gtgacacttc     60

ttctcccaga accggagtgg ac                                              82


<210>  83
<211>  51
<212>  DNA
<213>  Influenza B virus

<400>  83
acttggcact cagcagcaac agccatttac tgtttaatgg gctcaggaca a              51


<210>  84
<211>  79
<212>  DNA
<213>  Influenza B virus

<400>  84
gattgttatc ttatgataac tgatggctca gcttcaggga ttagtgaatg cagatttctt     60

aagattcgag agggccgaa                                                  79


<210>  85
<211>  76
<212>  DNA
<213>  Influenza B virus

<400>  85
taaaattttc accaacaaaa ataattgcac caacaacgtc gttggactcc gcgaacgcat     60

caaattttca ggccgt                                                     76


<210>  86
<211>  86
<212>  DNA
<213>  Influenza B virus

<400>  86
cccagaccag atgatggaag cataacaggg ccttgcgaat ctaatgggga caaagggcgt     60

ggaggcatca agggaggatt tgttca                                          86


<210>  87
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  M-1 capture sequence

<400>  87
catgaagcat ttgaaatag                                                  19


<210>  88
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  M-1 label sequence

<400>  88
agaaggccat gaaagctc                                                   18


<210>  89
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  M-2 capture sequence

<400>  89
atggagatat tgagtgacc                                                  19


<210>  90
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  M-2 label sequence

<400>  90
catagtgatt gaggggct                                                   18


<210>  91
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  M-3 capture sequence

<400>  91
aatacgaata aaaggtccaa                                                 20


<210>  92
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  M-3 label sequence

<400>  92
taaagagaca ataaacagag                                                 20


<210>  93
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  M-4 capture sequence

<400>  93
gtgaaacagt tttgga                                                     16


<210>  94
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  M-4 label sequence

<400>  94
gtagaagaat tgcatt                                                     16


<210>  95
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  M-5 capture sequence

<400>  95
tttttaaaac ccaaagacc                                                  19


<210>  96
<211>  19
<212>  DNA
<213>  Artificial

<220>
<223>  M-5 label sequence

<400>  96
ggaaaggaaa agaagattc                                                  19


<210>  97
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  M-6 capture sequence

<400>  97
gagacacagt taccaaaaag aaatc                                           25


<210>  98
<211>  25
<212>  DNA
<213>  Artificial

<220>
<223>  M-6 label sequence

<400>  98
aggccaaaga aacaatgaag gaggt                                           25


<210>  99
<211>  24
<212>  DNA
<213>  Artificial

<220>
<223>  M-7 capture sequence

<400>  99
tgaacacagc aaaaacaatg aatg                                            24


<210>  100
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  M-7 label sequence

<400>  100
aatggggaag ggagaagacg tcc                                             23


<210>  101
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  M-8 capture sequence

<400>  101
caacattgga gtgctgagat ctc                                             23


<210>  102
<211>  23
<212>  DNA
<213>  Artificial

<220>
<223>  M-8 label sequence

<400>  102
tggggcaagt caaaagaatg ggg                                             23


<210>  103
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  M-9 capture sequence

<400>  103
actgttggtt cggtgggaaa g                                               21


<210>  104
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  M-9 label sequence

<400>  104
atttgaccta gactctgcct t                                               21


<210>  105
<211>  51
<212>  DNA
<213>  Influenza B virus

<400>  105
agctttcatg aagcatttga aatagcagaa ggccatgaaa gctcagcgct a              51


<210>  106
<211>  71
<212>  DNA
<213>  Influenza B virus

<400>  106
actatctaac aacatggaga tattgagtga ccacatagtg attgaggggc tttctgctga     60

agagataata a                                                          71


<210>  107
<211>  81
<212>  DNA
<213>  Influenza B virus

<400>  107
aaaagaggag taaacatgaa aatacgaata aaaggtccaa ataaagagac aataaacaga     60

gaggtatcaa ttttgagaca c                                               81


<210>  108
<211>  53
<212>  DNA
<213>  Influenza B virus

<400>  108
tgaagagata ataaaaatgg gtgaaacagt tttggaggta gaagaattgc att            53


<210>  109
<211>  79
<212>  DNA
<213>  Influenza B virus

<400>  109
taattggtgc ctctatatgc tttttaaaac ccaaagacca ggaaaggaaa agaagattca     60

tcacagagcc tctatcagg                                                  79


<210>  110
<211>  91
<212>  DNA
<213>  Influenza B virus

<400>  110
aacagagagg tatcaatttt gagacacagt taccaaaaag aaatccaggc caaagaaaca     60

atgaaggagg tactctctga caacatggag g                                    91


<210>  111
<211>  88
<212>  DNA
<213>  Influenza B virus

<400>  111
aatgcagatg gtttcagcta tgaacacagc aaaaacaatg aatggaatgg ggaagggaga     60

agacgtccaa aaactggcag aagagctg                                        88


<210>  112
<211>  87
<212>  DNA
<213>  Influenza B virus

<400>  112
ctggcagaag agctgcaaag caacattgga gtgctgagat ctcttggggc aagtcaaaag     60

aatggggaag gaattgcaaa ggatgta                                         87


<210>  113
<211>  83
<212>  DNA
<213>  Influenza B virus

<400>  113
agaactagca gaaaaattac actgttggtt cggtgggaaa gaatttgacc tagactctgc     60

cttggaatgg ataaaaaaca aaa                                             83


