Table 6.2. Crohn's Disease genome wide association study results in the German Population. SNP
markers found to be associated with Crohn's Disease from the analysis of genome wide scan (GWS)
data. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#, dbSNP data
base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent application;
21 bp location sequence, 10 base pair unique sequences flanking either side of central polymorphic
SNP; -log10 P values for GWS (the genetic analysis sources are described in the Examples section
(see LDSTATS V2 and Singletype), - log10 of the P value for statistical significance from the GWS
for single SNP markers and for the most highly associated multi-marker haplotypes centered at the
reference marker and defined by a sliding window of specified size (W03, W05, W07 and W09).

                                                                             ldstatv2                                        singletype                         
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03     W05     W07     W09     Single Genotype Likelihood Ratio   Single Allele Likelihood Ratio   
372         1     171044239      1102737    10813    GTGAACATACRCACACATGTG   0.028           -       -       -       -       0.617                              0.067                            
372         1     171056388      11810332   10814    GTCATGAGTCRTGTGTAGTAA   0.416           0.061   -       -       -       0.234                              0.416                            
372         1     171062618      10912477   10815    AACTACAATAMCCCAGGTTTC   0.499           0.836   2.755   -       -       0.469                              0.499                            
372         1     171067428      10489277   10816    GGTGATCATAYGCAAATAACT   0.143           1.916   4.713   3.000   -       0.028                              0.143                            
372         1     171077429      11580042   10817    AGTCAGGTGAYGCAGGGTTTT   3.303           4.184   2.748   3.143   2.445   3.956                              3.307                            
372         1     171081478      12066143   10818    CATTTCCTGCYCTTAACAGGC   5.327           3.184   4.280   2.845   3.376   4.462                              5.349                            
372         1     171119026      12037853   10821    GCTAAGCTTTRCGGGACAGTG   4.113           3.500   2.842   3.179   1.936   3.475                              4.129                            
372         1     171128857      9286879    10823    AGAAGCATATRTTGAGGGACT   4.098           2.856   4.105   1.776   1.748   3.492                              4.115                            
372         1     171129607      11801183   10824    GAGAGTAAAGYTGACTAACAT   0.074           3.288   3.156   2.088   1.363   0.076                              0.074                            
372         1     171130571      2157453    10825    AAGCTTCAGCRCAAAACATTT   4.098           2.547   2.274   1.708   1.824   3.492                              4.115                            
372         1     171145646      2227203    10828    TTCCATACAGYACTGAGAGGG   1.622           2.604   2.379   2.433   1.994   1.229                              1.622                            
372         1     171148450      2213746    10829    GAAGGCAGCARCAGAGAGCAT   2.337           1.584   3.046   2.240   1.705   1.849                              2.339                            
372         1     171153123      1883475    10831    TGGCTTGTTGMAACATTACAA   2.608           1.925   1.586   1.819   1.241   1.962                              2.611                            
372         1     171162470      2422260    10833    AAGGGCAGCARAGTGAAGTGC   2.195           1.608   1.236   0.557   2.208   1.768                              2.197                            
372         1     171188350      10912501   10838    ATTGGGAAAGRGCAGGAGAAA   2.395           1.273   0.786   1.029   0.587   1.754                              2.397                            
372         1     171203259      972100     10841    GGGATGCTGGYGGGTTAGCAC   0.150           1.035   1.063   0.963   0.527   1.084                              0.150                            
372         1     171203325      972099     10842    TTTTTTGTTTMTCCTCCTTGA   1.212           0.502   0.448   0.544   0.424   0.740                              1.213                            
372         1     171207230      10489273   10843    AACTGATGGGYCGAGCCTGCT   0.634           0.455   0.293   0.234   0.270   0.318                              0.634                            
372         1     171208336      10489272   10844    TGCCAGTCTARCCTACTTTGG   0.104           0.262   0.267   0.115   0.074   0.142                              0.104                            
372         1     171211432      4916292    10845    ATAAGCACTCRTTTCTGCTGG   0.327           0.215   0.142   0.145   0.439   0.149                              0.327                            
372         1     171216470      12130311   10846    ACTAAGGACGRCTAGACTGAT   0.059           0.572   0.197   0.257   -       0.006                              0.059                            
372         1     171251854      1883478    10848    ACTTTGCTTCYAATTACAGCT   0.466           0.647   0.724   -       -       0.461                              0.492                            
372         1     171284109      2236876    10851    CTAGATTTACRTAGTTCGGCT   0.480           0.540   -       -       -       0.251                              0.480                            
372         1     171293474      7546619    10852    TATTAATTAARAGAGAAATCT   0.698           -       -       -       -       0.338                              0.698                            
373         3     32194730       11922715   11210    TTACAGACACRGTATATCTCC   0.512           -       -       -       -       0.502                              0.512                            
373         3     32197177       17028998   11211    TTTCCTTGAAYGCATGTGTTT   2.137           1.712   -       -       -       1.640                              2.153                            
373         3     32198485       9842565    11212    AAGAATCTGTRTTCCTGTTGA   1.660           1.597   3.083   -       -       1.235                              1.663                            
373         3     32200207       11922502   11213    TTTACTGGGTYGTACCTTTTG   0.401           2.240   2.618   1.575   -       0.213                              0.401                            
373         3     32200330       7644491    11214    TAACTAACACYTTTATCTTTA   3.658           2.551   1.525   1.331   -       3.107                              3.691                            
373         3     32203421       11129505   11215    CCCAGGCAAAYCGAAAAGGCT   2.278           2.246   2.150   -       -       1.776                              2.296                            
373         3     32210485       11720070   11216    CAGGATGATCYGGAGAAAACA   0.310           1.461   -       -       -       0.106                              0.310                            
373         3     32211062       4440157    11217    CCTGGGAGACRTAAAGGAGTT   0.429           -       -       -       -       0.187                              0.430                            
374         6     99099090       183316     11925    ACGTAATTTCYAGCTTAACAG   0.255           0.289   0.508   0.331   0.635   0.321                              0.255                            
374         6     99104437       211225     11926    CTATACGAACRTCACTTCTGA   0.198           0.422   0.535   0.567   1.824   0.453                              0.198                            
374         6     99118222       2086512    11929    GTGACCTCCTRACTATCCTCT   1.024           0.713   0.547   2.978   2.154   0.659                              1.025                            
374         6     99120461       2046174    11930    GGATCTGCTTRAAGATCTTTA   0.325           0.766   3.250   3.250   3.403   0.155                              0.325                            
374         6     99121465       6931766    11931    TACAACTAAAYAGATCTTCAA   1.170           1.648   1.996   4.016   5.055   0.799                              1.173                            
374         6     99124453       17829357   11932    TTATTAGCTAKGTAAAAGCTC   2.079           1.970   2.577   3.998   3.859   2.479                              2.088                            
374         6     99124496       1481447    11933    AAGCAGGATGYTGCTGCTACA   2.079           2.042   3.654   3.137   3.182   2.479                              2.088                            
374         6     99133795       9401968    11934    TTTAGTCACAYTGAATTTTTG   2.530           1.946   2.032   3.293   2.870   2.336                              2.544                            
374         6     99140210       11752460   11935    CTAGTACAGAYGGACACAGTT   1.120           1.807   2.032   1.613   2.853   1.158                              1.121                            
374         6     99141034       1481438    11936    TTTTGATGGCYGCCTTTCAAT   0.408           0.703   1.567   1.694   2.823   0.322                              0.373                            
374         6     99145072       12663008   11937    CATGGCAGCCYGAACACTGTC   1.120           0.437   0.409   2.693   2.823   1.158                              1.121                            
374         6     99157888       1038267    11938    AAGCCTAAAAYACTCTGAGTA   0.111           0.576   1.422   1.422   2.693   0.128                              0.111                            
374         6     99180746       1481462    11939    CATATGCTCARTAACCACATG   0.111           0.852   1.824   1.422   0.974   0.128                              0.111                            
374         6     99182800       10499020   11940    CTAAATAGTCRTTTTTTACCT   1.518           0.852   0.955   1.178   1.226   1.371                              1.520                            
374         6     99185971       1038266    11941    GAGGCTCCTAYGGAGTCTGGA   1.518           1.518   0.660   1.117   -       1.371                              1.520                            
374         6     99190242       17058746   11942    AAATATTTGCYATCCATACAT   1.518           1.143   1.898   -       -       1.371                              1.520                            
374         6     99245596       12204275   11943    CTTACGCATCKGGATAATTCC   1.034           1.423   -       -       -       0.607                              1.034                            
375         7     38720100       1859493    12098    TCTGGGACCAYTGGAAAAGGG   0.099           -       -       -       -       0.027                              0.099                            
375         7     38724851       7797871    12099    TGGCGTAGGTRGGTGGTTCTA   1.246           2.761   -       -       -       0.816                              1.246                            
375         7     38728035       12701660   12100    TCTGGGTAAAYGTAAAGAAAG   1.614           2.342   1.752   -       -       1.243                              1.615                            
375         7     38730416       1061303    12101    TGCTCAAATCRTAAGTGAGGA   0.509           1.457   1.960   1.194   -       0.330                              0.510                            
375         7     38732001       12701661   12103    CCACAGTTGGYGACGCTTTCA   0.747           1.653   1.748   1.671   1.269   0.482                              0.748                            
375         7     38733289       7803132    12104    CAAAACAGGTMTTATAATCAT   3.062           2.038   1.859   1.514   1.865   2.526                              3.066                            
375         7     38759768       3779127    12108    ACTGATTACAYTGTCGCACAG   2.338           2.010   1.876   1.383   0.978   1.703                              2.340                            
375         7     38760074       3779126    12109    AGATACAAGTKCACTTATTGT   1.094           2.521   1.954   1.421   -       1.254                              1.094                            
375         7     38761292       10279367   12110    CTAAAATGGTRCTTTGCTATA   3.587           2.428   2.166   -       -       2.965                              3.594                            
375         7     38762010       3801143    12111    AAGCAGAGCCKCTCTACCTGA   0.783           2.524   -       -       -       0.684                              0.762                            
375         7     38764069       13228699   12112    CTCTATTATGMCATCTCTTTT   0.034           -       -       -       -       0.109                              0.034                            
376         10    82196328       1870145    12668    TTCCTGCTTGMCCCTGCTCAG   0.120           0.121   0.003   0.471   0.577   0.027                              0.120                            
376         10    82208652       -          12669    TGGTGAGGCARGCTTTCAAGT   0.029           0.280   1.856   1.337   0.918   0.163                              0.029                            
376         10    82224567       878652     12670    TTCCCTTGGGKTTTCTCTCCC   0.085           1.242   2.365   1.523   0.950   0.263                              0.079                            
376         10    82224597       878651     12671    CCTCATGACCMCTTATTAGTA   2.495           2.467   1.551   1.570   1.209   1.957                              2.501                            
376         10    82227106       -          12672    AAATGTTCCTRGAGGTCTTCT   0.897           2.367   1.789   1.279   2.413   0.575                              0.897                            
376         10    82231910       -          12673    TTTCTCAACAYGGTTTTTACA   1.491           2.034   2.398   2.060   2.382   0.996                              1.492                            
376         10    82237119       2343308    12674    CCTTCTTACCRGAACCTTGTG   0.057           1.795   2.702   2.602   2.127   0.008                              0.057                            
376         10    82239088       -          12675    CTTGTTTAGTYCTTCATTCAG   1.953           2.729   2.808   2.656   1.881   1.592                              1.956                            
376         10    82253934       -          12676    GGCCTGGGCCRCTGGATAGCT   1.320           1.409   3.596   2.760   1.715   0.842                              1.322                            
376         10    82254403       2343550    12677    GCTCTGTGAARCATGTTCACA   2.016           3.479   4.665   2.750   1.934   1.486                              2.020                            
376         10    82263059       -          12678    TGAGTAGAACYGGGCCAGTTG   3.268           2.549   4.268   2.921   1.718   2.696                              3.280                            
376         10    82272731       2138285    12679    GCTCAGTGACRTCAACAGGAT   0.059           2.538   2.049   2.429   2.005   0.089                              0.059                            
376         10    82274286       -          12680    CTGGAAGGTCRGGAAATCCAG   0.774           0.162   1.541   1.167   1.851   0.395                              0.775                            
376         10    82275513       -          12681    TATCTCATGGKGAAAAGTGAA   0.181           0.379   0.113   2.083   1.234   0.040                              0.181                            
376         10    82278157       -          12682    TAGGGAACTTRGGGCCCAGTC   0.578           0.258   0.381   1.065   2.029   0.410                              0.579                            
376         10    82287513       -          12683    TGAAATTGGCYGAAAAGACAT   0.269           0.759   1.652   1.830   1.113   0.155                              0.264                            
376         10    82288781       -          12684    ACTGGGCATCYGGAGAGAGGG   1.559           1.946   1.869   1.887   1.538   1.168                              1.562                            
376         10    82295607       -          12686    AGTATAGAAAYCAGAATATAT   1.807           2.001   1.743   1.806   2.052   1.553                              1.812                            
376         10    82297097       1870136    12687    TGATTTTCCTYAACCTCCTTC   0.581           0.778   2.497   2.065   2.197   0.441                              0.581                            
376         10    82299407       -          12688    CCTGCCACCTYGCTCTTGTTT   0.279           0.168   0.581   1.918   0.834   0.088                              0.279                            
376         10    82301805       -          12689    TTTTGTTGACYTAATTACCTC   0.042           0.053   0.588   0.165   0.842   0.415                              0.042                            
377         13    84496987       2485235    13072    ATACAGTGTTRTCAGAAAGAA   0.150           -       -       -       -       0.323                              0.150                            
377         13    84502069       2454957    13073    CATCTTCCTCKCTGTTCGTGT   0.666           0.600   -       -       -       0.606                              0.679                            
377         13    84503947       2485241    13074    CAGTTTTGTAYAACATTTTGC   1.345           0.865   0.503   -       -       0.948                              1.401                            
377         13    84507278       2485247    13075    TTTCATGGACYAGGCCCAGGG   1.283           0.809   0.336   0.246   -       0.852                              1.284                            
377         13    84509744       9319107    13076    TCCTTTAAGTYTTACTGATTA   0.687           0.358   0.339   1.093   1.519   0.707                              0.743                            
377         13    84512475       4566049    13078    TGGATAGATAMCAGAGTTAAT   0.869           0.231   0.143   0.819   1.978   0.870                              0.846                            
377         13    84513855       10467663   13079    GTAAACTAACRTGCCATTACC   0.284           0.342   0.875   1.931   2.105   1.722                              0.285                            
377         13    84514516       12716725   13080    GAAATGAAGARTACCTTCTCA   0.486           1.200   1.627   2.285   2.866   1.446                              0.486                            
377         13    84516283       12430962   13081    TTGTTAATAGMAAGTGATTGT   2.602           1.706   1.900   2.658   2.970   2.263                              2.612                            
377         13    84521684       2341435    13082    TATGTCAATGMTCATTTATAA   1.885           1.890   2.928   2.327   1.737   1.333                              1.886                            
377         13    84526778       10507947   13084    TTATATATGAYGATTTCCCTC   3.083           1.911   2.854   2.281   1.946   2.758                              3.095                            
377         13    84531579       1500682    13085    CTATCCGTAAMATGCTAGTTT   4.078           2.479   2.564   2.659   2.483   3.491                              4.093                            
377         13    84540363       7336296    13088    ATTTTATTAGYTTCAAATGCC   2.455           2.866   3.036   2.743   2.502   1.902                              2.463                            
377         13    84542446       9575745    13089    CTTCTGCAAGYCCTTGGGCAT   4.270           3.126   2.918   2.151   2.383   3.693                              4.286                            
377         13    84544069       9575747    13090    TCTATCTATTYGGTCTTTCTA   2.521           2.718   2.541   2.573   2.148   2.017                              2.575                            
377         13    84585984       7987820    13095    TGTTTGGTTGMCCCCATTTTT   0.990           2.511   3.347   2.862   -       0.667                              0.990                            
377         13    84624020       9593991    13098    CTAATCTCTARTAAGAAGCTG   0.350           0.780   3.323   -       -       0.131                              0.350                            
377         13    84627554       1316712    13099    TCCAGCTAGCYATCCACAAAC   1.051           0.892   -       -       -       0.729                              1.051                            
377         13    84642176       6563436    13100    TGGAACTGTTYGCTGTGCAAG   0.350           -       -       -       -       0.131                              0.350                            
378         15    40120195       1712427    13239    ACAAAAGATAYAAACAGGCAA   1.318           -       -       -       -       1.431                              1.322                            
378         15    40120317       4924609    13240    CTCTGATGTARTTGGTATGGT   0.413           2.071   -       -       -       0.165                              0.413                            
378         15    40120773       1712430    13241    TTTGGTTTAAYGAGGGATAGG   2.494           1.916   3.198   -       -       1.885                              2.501                            
378         15    40121440       1712431    13242    GTCTCATGGAYGGGGACAATG   1.363           2.593   3.564   3.097   -       1.321                              1.367                            
378         15    40121632       1712432    13243    TGATATGATGYTATGTTATGT   0.244           1.532   3.932   2.722   2.759   0.155                              0.245                            
378         15    40124009       7176475    13244    TGCCACCGAAKGGTATTAAGC   1.198           1.389   1.248   3.520   2.796   2.100                              1.204                            
378         15    40130319       1668547    13245    AGCAGTGCCAYCAGACTCCTC   0.064           0.654   3.187   3.483   3.767   0.066                              0.064                            
378         15    40130866       776686     13246    GGCAGCTTAAMGGGGATGTGT   0.533           2.288   3.420   3.454   3.628   0.330                              0.571                            
378         15    40131086       12902878   13247    GGTGTCTCTGRCCCAAATAGC   1.991           2.927   3.420   3.561   4.155   1.322                              1.921                            
378         15    40134486       776691     13248    GTATACATAAKTTTAAAGAAA   3.093           3.576   3.561   4.079   4.117   2.391                              3.099                            
378         15    40136093       776694     13249    AATGCCAGGAMTGATTCATAG   1.718           2.953   5.019   4.117   3.351   1.527                              1.725                            
378         15    40137042       776698     13250    GTAAAACACCYGCGTCAGGGT   0.619           1.126   4.213   3.754   2.981   0.503                              0.619                            
378         15    40138630       4924613    13251    CCCTTTTGAAYACACCCATGT   0.270           1.038   1.839   2.510   3.114   0.108                              0.270                            
378         15    40140213       776701     13252    TCTCAGGAACYCCCTTGGCTC   1.626           1.824   2.457   2.165   2.197   1.432                              1.632                            
378         15    40145534       800719     13253    CTTTACTGAGKCTTGATCAGA   1.476           1.133   2.237   2.140   2.140   1.072                              1.477                            
378         15    40145872       11070359   13254    GTTAACTGGTRCCCATTGCAC   0.616           0.792   1.182   2.377   2.400   0.385                              0.616                            
378         15    40146488       7181906    13255    AAAATAAAACRCAACAGCTAG   0.818           0.424   1.292   2.333   2.645   1.034                              0.819                            
378         15    40148314       750052     13256    GTCACTGAGCYGCAGCAGGCG   0.272           0.516   2.106   2.098   2.346   0.097                              0.272                            
378         15    40148891       755599     13257    GAACTGGAAARCTGGGAATAT   0.230           1.828   2.260   1.885   2.463   0.083                              0.231                            
378         15    40151061       1668589    13258    ACCAAAAGAGRTCAGCCTCAG   2.372           2.554   3.341   2.246   2.157   1.724                              2.378                            
378         15    40152168       16972615   13259    GCCCATCTTCRTGGATTTAAG   0.923           2.160   2.829   2.336   3.341   0.533                              0.925                            
378         15    40153081       1668575    13260    ATGGAAGAGTRTCTAGTTCTA   0.020           0.517   1.837   3.243   3.217   0.036                              0.020                            
378         15    40160724       600415     13261    GGGAAGGGACYGCATAGTTGG   0.235           0.122   3.150   2.921   4.024   0.187                              0.245                            
378         15    40167451       776727     13262    TCCCCTTCGGRAACAGAGCAA   0.091           1.692   1.318   2.904   1.844   0.059                              0.091                            
378         15    40167687       776726     13263    AGTCCACAGGYGCTACCCTGG   1.834           1.126   2.711   1.760   1.408   1.592                              1.839                            
378         15    40177515       11638728   13265    AGTAAACGATYTTATCCACAA   1.954           1.198   1.035   1.297   1.506   1.465                              1.966                            
378         15    40179456       8028204    13266    ATAGAGAACAYCGTTGTTTTA   0.222           0.832   0.669   1.238   1.864   0.102                              0.222                            
